2A20A

Solution structure of rim2 zinc finger domain
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
60
structure length
60
Chain Sequence
QEQKGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRKQQE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Metal binding protein
molecule keywords Regulating synaptic membrane exocytosis protein 2
publication title A Munc13/RIM/Rab3 tripartite complex: from priming to plasticity?
pubmed doi rcsb
source organism Rattus norvegicus
total genus 6
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2005-06-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.120 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2a20A01
2A20A 2CJSC
chains in the Genus database with same CATH superfamily
3MEKA 3TO6A 3UOEA 2V53A 5EX3A 2SGEI 2QQEA 1CT2I 1KBEA 1K7UA 1Y1CA 2ODDA 1SGEI 2XRCA 3OVOA 3E59A 2JYYA 3OXFA 3VDUA 1SGPI 2RIJA 4AMLA 3UGIA 1V1IA 1WGTA 4E1PA 1NXUA 2CWFA 2RC4A 1TBQR 5FUVA 1BMOA 2OZUA 2KMRA 1UHAA 1X4SA 2ENZA 2NU2I 4OVOA 5DAEA 3UGLA 1WTJA 2YUUA 5E3RA 2GKVA 1HDLA 2B0UC 4UXHA 1CHOI 1TBNA 1CSOI 2J9RA 2L8EA 1PPFI 1KBFA 1KMAA 1CT0I 2N52A 1TBRR 2YQPA 3E2IA 1PJUA 3QWPA 1ULNA 2L7XA 2J87A 1R0RI 2KMQA 2QQCA 4UXJA 2ROWA 2V1CA 2KMPA 1Y1BA 3OXGA 1WKXA 3D00A 3R5AA 1UVGA 1OMTA 1MJAA 2LB7A 2QPOA 5J8CA 2WGCA 1OMUA 1WGCA 1RFHA 4JCVE 5EX0A 3OXLA 3UEJA 1Y8FA 1FAQA 1AN1I 4HGUA 1PTRA 2ERWA 2FNFX 5J8FA 1LR8A 2GIVA 1K7VA 1SGNI 3FSXA 4SGBI 1MJBA 5JHWC 2DB6A 3VDPA 2DIPA 1HEVA 5CCLA 4E1RA 2B8TA 2ARPF 1TUSA 1TOTA 5CCMA 2A20A 2JXDA 1M8BA 2F3CI 1OVOA 2GVIA 3R5DA 4A24A 1SGQI 4B6DA 3TO9A 3OL0A 1P9ZA 1S20A 1CE3A 2X3TA 2LUYA 4L9MA 1PCEA 2ENNA 2JZMA 1UUCA 3HH2C 4UXIA 1LR9A 3SGBI 1DS3I 4MPIA 3SGQI 5FUWA 3FC3A 3TJQA 2N17A 4DNCA 1TGSI 3VE5A 1IW4A 1HJAI 1MT1A 1TURA 2ORWA 2OVOA 2NU3I 5FUYA 2ORVA 2UZ3A 1SGDI 7WGAA 1YTPA 4GI3C 1M8CA 2SGFI 1SGYI 1N13A 2GKRI 2N1AB 4FKDA 4WP4A 5HI7A 3SEKC 2Y0MA 1ULKA 3FSYA 2P6AC 2WVJA 3CXLA 1DS2I 2KMOA 1PTQA 2E5RA 1IY6A 1XA6A 2NU4I 3QTLD 1FARA 1MJ9A 1U5KA 1W4RA 1OYVI 2QQDA 1CT4I 2KCXA 2CJSC 2ELIA 3R5BA 2CWGA 2GKTI 3RU0A 1Q9BA 3UFFA 1Z7KB 3TOAA 2QQ0A 2NU0I 1ULMA 2JW6A 2PQ8A 5E3QA 3TOBA 1CGII 1Z2IA 2M5XA 2OU2A 2UVOA 2E73A 2BUSA 3QAHA 5E3PA 1HPTA 1FYBA 1LR7A 1H0ZA 2NU1I 3UGDA 2K9HA 2X52A 2VRWB 1P9GA 2OD1A 2V1CC 3TO7A 1TIHA 2CWHA 1SGRI 1TBOA 2W0TA 2WCYA 3PDNA 5FUXA 1IY5A 1FY7A 1R79A 1UVFA 2SGQI 9WGAA 2JA1A 1X74A 3B4VC 1K7TA 1W3SA 2DKVA 1VDDA 1CGJI 1XX6A 1NUBA 1YU6C 3KY9A 3R5CA 3BJIA 2SGDI 2LEOA 2SGPI 1V1HA 3UEYA 3GOXA 2N71A 5HQ8A 1BUSA 1XBTA
chains in the Genus database with same CATH topology
3MEKA 2V53A 5EX3A 2SGEI 2QQEA 1CT2I 1KBEA 2ODDA 1Y1CA 2XRCA 1SGEI 3OVOA 3E59A 2JYYA 3OXFA 3VDUA 1SGPI 3UGIA 1V1IA 4E1PA 1TBQR 5FUVA 1BMOA 2KMRA 1X4SA 2ENZA 2NU2I 4OVOA 5DAEA 3UGLA 2YUUA 2GKVA 1HDLA 2B0UC 4UXHA 1CHOI 1TBNA 1CSOI 2J9RA 2L8EA 1PPFI 1KBFA 1KMAA 1CT0I 2N52A 1TBRR 2YQPA 3E2IA 1PJUA 3QWPA 2L7XA 2QQCA 2J87A 1R0RI 2KMQA 4UXJA 2ROWA 2V1CA 2KMPA 1Y1BA 3OXGA 3D00A 1UVGA 1OMTA 2QPOA 1OMUA 1RFHA 4JCVE 5EX0A 3OXLA 3UEJA 1Y8FA 1FAQA 1AN1I 4HGUA 1PTRA 2ERWA 2FNFX 1LR8A 1SGNI 4SGBI 5JHWC 2DB6A 3VDPA 2DIPA 5CCLA 4E1RA 2B8TA 2ARPF 1TUSA 1TOTA 5CCMA 2A20A 2JXDA 1M8BA 2F3CI 1OVOA 2GVIA 4A24A 1SGQI 4B6DA 3OL0A 1CE3A 2LUYA 4L9MA 1PCEA 2ENNA 2JZMA 1UUCA 3HH2C 4UXIA 1LR9A 3SGBI 1DS3I 3SGQI 5FUWA 3FC3A 3TJQA 2N17A 1TGSI 3VE5A 1IW4A 1HJAI 1MT1A 1TURA 2ORWA 2OVOA 2NU3I 5FUYA 2ORVA 2UZ3A 1SGDI 1YTPA 4GI3C 1M8CA 2SGFI 1SGYI 1N13A 2GKRI 2N1AB 4FKDA 5HI7A 3SEKC 2P6AC 2WVJA 3CXLA 1DS2I 2KMOA 1PTQA 2E5RA 1IY6A 1XA6A 2NU4I 3QTLD 1FARA 1U5KA 1W4RA 1OYVI 2QQDA 1CT4I 2KCXA 2CJSC 2ELIA 2GKTI 3RU0A 3UFFA 1Z7KB 2QQ0A 2NU0I 2JW6A 1CGII 2M5XA 1FYBA 2E73A 2BUSA 1H0ZA 1HPTA 1LR7A 2NU1I 3UGDA 2K9HA 2VRWB 2OD1A 2V1CC 1TIHA 1SGRI 1TBOA 2W0TA 2WCYA 3PDNA 5FUXA 1IY5A 1R79A 1UVFA 2SGQI 2JA1A 1X74A 3B4VC 1W3SA 1VDDA 1CGJI 1XX6A 1NUBA 1YU6C 3KY9A 3BJIA 2SGDI 2LEOA 2SGPI 1V1HA 3UEYA 3GOXA 2N71A 5HQ8A 1BUSA 1XBTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2A20 A;  2CJS C; 
#chains in the Genus database with same CATH topology
 3MEK A;  3TO6 A;  3UOE A;  2V53 A;  5EX3 A;  2SGE I;  2QQE A;  1CT2 I;  1KBE A;  1K7U A;  1Y1C A;  2ODD A;  1SGE I;  2XRC A;  3OVO A;  3E59 A;  2JYY A;  3OXF A;  3VDU A;  1SGP I;  2RIJ A;  4AML A;  3UGI A;  1V1I A;  1WGT A;  4E1P A;  1NXU A;  2CWF A;  2RC4 A;  1TBQ R;  5FUV A;  1BMO A;  2OZU A;  2KMR A;  1UHA A;  1X4S A;  2ENZ A;  2NU2 I;  4OVO A;  5DAE A;  3UGL A;  1WTJ A;  2YUU A;  5E3R A;  2GKV A;  1HDL A;  2B0U C;  4UXH A;  1CHO I;  1TBN A;  1CSO I;  2J9R A;  2L8E A;  1PPF I;  1KBF A;  1KMA A;  1CT0 I;  2N52 A;  1TBR R;  2YQP A;  3E2I A;  1PJU A;  3QWP A;  1ULN A;  2L7X A;  2J87 A;  1R0R I;  2KMQ A;  2QQC A;  4UXJ A;  2ROW A;  2V1C A;  2KMP A;  1Y1B A;  3OXG A;  1WKX A;  3D00 A;  3R5A A;  1UVG A;  1OMT A;  1MJA A;  2LB7 A;  2QPO A;  5J8C A;  2WGC A;  1OMU A;  1WGC A;  1RFH A;  4JCV E;  5EX0 A;  3OXL A;  3UEJ A;  1Y8F A;  1FAQ A;  1AN1 I;  4HGU A;  1PTR A;  2ERW A;  2FNF X;  5J8F A;  1LR8 A;  2GIV A;  1K7V A;  1SGN I;  3FSX A;  4SGB I;  1MJB A;  5JHW C;  2DB6 A;  3VDP A;  2DIP A;  1HEV A;  5CCL A;  4E1R A;  2B8T A;  2ARP F;  1TUS A;  1TOT A;  5CCM A;  2A20 A;  2JXD A;  1M8B A;  2F3C I;  1OVO A;  2GVI A;  3R5D A;  4A24 A;  1SGQ I;  4B6D A;  3TO9 A;  3OL0 A;  1P9Z A;  1S20 A;  1CE3 A;  2X3T A;  2LUY A;  4L9M A;  1PCE A;  2ENN A;  2JZM A;  1UUC A;  3HH2 C;  4UXI A;  1LR9 A;  3SGB I;  1DS3 I;  4MPI A;  3SGQ I;  5FUW A;  3FC3 A;  3TJQ A;  2N17 A;  4DNC A;  1TGS I;  3VE5 A;  1IW4 A;  1HJA I;  1MT1 A;  1TUR A;  2ORW A;  2OVO A;  2NU3 I;  5FUY A;  2ORV A;  2UZ3 A;  1SGD I;  7WGA A;  1YTP A;  4GI3 C;  1M8C A;  2SGF I;  1SGY I;  1N13 A;  2GKR I;  2N1A B;  4FKD A;  4WP4 A;  5HI7 A;  3SEK C;  2Y0M A;  1ULK A;  3FSY A;  2P6A C;  2WVJ A;  3CXL A;  1DS2 I;  2KMO A;  1PTQ A;  2E5R A;  1IY6 A;  1XA6 A;  2NU4 I;  3QTL D;  1FAR A;  1MJ9 A;  1U5K A;  1W4R A;  1OYV I;  2QQD A;  1CT4 I;  2KCX A;  2CJS C;  2ELI A;  3R5B A;  2CWG A;  2GKT I;  3RU0 A;  1Q9B A;  3UFF A;  1Z7K B;  3TOA A;  2QQ0 A;  2NU0 I;  1ULM A;  2JW6 A;  2PQ8 A;  5E3Q A;  3TOB A;  1CGI I;  1Z2I A;  2M5X A;  2OU2 A;  2UVO A;  2E73 A;  2BUS A;  3QAH A;  5E3P A;  1HPT A;  1FYB A;  1LR7 A;  1H0Z A;  2NU1 I;  3UGD A;  2K9H A;  2X52 A;  2VRW B;  1P9G A;  2OD1 A;  2V1C C;  3TO7 A;  1TIH A;  2CWH A;  1SGR I;  1TBO A;  2W0T A;  2WCY A;  3PDN A;  5FUX A;  1IY5 A;  1FY7 A;  1R79 A;  1UVF A;  2SGQ I;  9WGA A;  2JA1 A;  1X74 A;  3B4V C;  1K7T A;  1W3S A;  2DKV A;  1VDD A;  1CGJ I;  1XX6 A;  1NUB A;  1YU6 C;  3KY9 A;  3R5C A;  3BJI A;  2SGD I;  2LEO A;  2SGP I;  1V1H A;  3UEY A;  3GOX A;  2N71 A;  5HQ8 A;  1BUS A;  1XBT A; 
#chains in the Genus database with same CATH homology
 3MEK A;  2V53 A;  5EX3 A;  2SGE I;  2QQE A;  1CT2 I;  1KBE A;  2ODD A;  1Y1C A;  2XRC A;  1SGE I;  3OVO A;  3E59 A;  2JYY A;  3OXF A;  3VDU A;  1SGP I;  3UGI A;  1V1I A;  4E1P A;  1TBQ R;  5FUV A;  1BMO A;  2KMR A;  1X4S A;  2ENZ A;  2NU2 I;  4OVO A;  5DAE A;  3UGL A;  2YUU A;  2GKV A;  1HDL A;  2B0U C;  4UXH A;  1CHO I;  1TBN A;  1CSO I;  2J9R A;  2L8E A;  1PPF I;  1KBF A;  1KMA A;  1CT0 I;  2N52 A;  1TBR R;  2YQP A;  3E2I A;  1PJU A;  3QWP A;  2L7X A;  2QQC A;  2J87 A;  1R0R I;  2KMQ A;  4UXJ A;  2ROW A;  2V1C A;  2KMP A;  1Y1B A;  3OXG A;  3D00 A;  1UVG A;  1OMT A;  2QPO A;  1OMU A;  1RFH A;  4JCV E;  5EX0 A;  3OXL A;  3UEJ A;  1Y8F A;  1FAQ A;  1AN1 I;  4HGU A;  1PTR A;  2ERW A;  2FNF X;  1LR8 A;  1SGN I;  4SGB I;  5JHW C;  2DB6 A;  3VDP A;  2DIP A;  5CCL A;  4E1R A;  2B8T A;  2ARP F;  1TUS A;  1TOT A;  5CCM A;  2A20 A;  2JXD A;  1M8B A;  2F3C I;  1OVO A;  2GVI A;  4A24 A;  1SGQ I;  4B6D A;  3OL0 A;  1CE3 A;  2LUY A;  4L9M A;  1PCE A;  2ENN A;  2JZM A;  1UUC A;  3HH2 C;  4UXI A;  1LR9 A;  3SGB I;  1DS3 I;  3SGQ I;  5FUW A;  3FC3 A;  3TJQ A;  2N17 A;  1TGS I;  3VE5 A;  1IW4 A;  1HJA I;  1MT1 A;  1TUR A;  2ORW A;  2OVO A;  2NU3 I;  5FUY A;  2ORV A;  2UZ3 A;  1SGD I;  1YTP A;  4GI3 C;  1M8C A;  2SGF I;  1SGY I;  1N13 A;  2GKR I;  2N1A B;  4FKD A;  5HI7 A;  3SEK C;  2P6A C;  2WVJ A;  3CXL A;  1DS2 I;  2KMO A;  1PTQ A;  2E5R A;  1IY6 A;  1XA6 A;  2NU4 I;  3QTL D;  1FAR A;  1U5K A;  1W4R A;  1OYV I;  2QQD A;  1CT4 I;  2KCX A;  2CJS C;  2ELI A;  2GKT I;  3RU0 A;  3UFF A;  1Z7K B;  2QQ0 A;  2NU0 I;  2JW6 A;  1CGI I;  2M5X A;  1FYB A;  2E73 A;  2BUS A;  1H0Z A;  1HPT A;  1LR7 A;  2NU1 I;  3UGD A;  2K9H A;  2VRW B;  2OD1 A;  2V1C C;  1TIH A;  1SGR I;  1TBO A;  2W0T A;  2WCY A;  3PDN A;  5FUX A;  1IY5 A;  1R79 A;  1UVF A;  2SGQ I;  2JA1 A;  1X74 A;  3B4V C;  1W3S A;  1VDD A;  1CGJ I;  1XX6 A;  1NUB A;  1YU6 C;  3KY9 A;  3BJI A;  2SGD I;  2LEO A;  2SGP I;  1V1H A;  3UEY A;  3GOX A;  2N71 A;  5HQ8 A;  1BUS A;  1XBT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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