2ACFA

Nmr structure of sars-cov non-structural protein nsp3a (sars1) from sars coronavirus
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
172
structure length
172
Chain Sequence
HHHMPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords Replicase polyprotein 1ab
publication title Structural basis of severe acute respiratory syndrome coronavirus ADP-ribose-1''-phosphate dephosphorylation by a conserved domain of nsP3.
pubmed doi rcsb
source organism Sars coronavirus tor2
total genus 62
structure length 172
sequence length 172
chains with identical sequence B, C, D
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2005-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 2acfA00
3H8GA 2J9AA 3KZWA 4K0CA 3KR4A 2XD7A 4ZYQA 4ZI6A 3V2BA 2AFCA 5HOLA 3H8FA 1LCPA 5DUSA 4D86A 3EWPA 3KR5A 2BFQA 4JGKA 5CB3A 5FSYA 1TXZA 3IIDA 4GVWA 3PEIA 3IIFA 3EWRA 3IJ3A 4ZY0A 2LGRA 2FAVA 2FXKA 3KQZA 3GQOA 5E3BA 4KSIA 3GQEA 4ETJA 5AILA 4GVVA 3EWQA 4ETKA 3Q71A 1BPMA 3EW5A 1GYTA 3JZTA 1LAMA 3EWOA 3GPGA 3H8EA 1NJRA 1TY8A 2ACFA 3V45A 3EJFA 5HIHA 3T8WA 3KQXA 4R76A 4ZX8A 4ABLA 5FSZA 1BLLE 1LANA 2L8RA 1BPNA 3GPQA 1YD9A 3EJGA 2X47A 2VRIA 2FG1A 4R6TA 3SIHA 3ETIA 4ZX9A 4ZY1A 5FSUA 5FSXA 4JLLA 1ZR5A 5D8NA 5CBMA 4GUAA 4JCAA 5CB5A 1LAPA 4J5QA 3EKEA 4X2TA 2EWBA 4IQYA 3SIIA 3SIJA 3Q6ZA 4J4ZA 3VFQA 4TU0A 4J5RA 5FSVA 4JVVA 3SIGA 2EEEA 1ZR3A 5CMSA 1HJZA 1SPVA 3GPOA 4ESSA 1VHUA 4R7MA 3JRUA 4UMLA 2DX6A 4ABKA 4ZY2A 2BFRA 4J5SA 4K3NA 4KYBA
chains in the Genus database with same CATH superfamily
3H8GA 2J9AA 3KZWA 4K0CA 3KR4A 2XD7A 4ZYQA 4ZI6A 3V2BA 2AFCA 2WCTA 5HOLA 3H8FA 1LCPA 5DUSA 2KQVA 4D86A 2W2GA 3EWPA 3KR5A 2BFQA 4JGKA 5CB3A 5FSYA 1TXZA 3IIDA 4GVWA 3PEIA 3IIFA 3EWRA 3IJ3A 4ZY0A 2LGRA 2FAVA 2FXKA 3KQZA 3GQOA 5E3BA 4KSIA 3GQEA 4ETJA 5AILA 4GVVA 3EWQA 4ETKA 3Q71A 1BPMA 3EW5A 1GYTA 3JZTA 1LAMA 3EWOA 3GPGA 3H8EA 1NJRA 1TY8A 2ACFA 3V45A 3EJFA 5HIHA 3T8WA 3KQXA 4R76A 4ZX8A 4ABLA 5FSZA 1BLLE 1LANA 2L8RA 2RNKA 1BPNA 3GPQA 1YD9A 3EJGA 2X47A 2VRIA 2FG1A 4R6TA 3SIHA 3ETIA 4ZX9A 4ZY1A 5FSUA 5FSXA 4JLLA 1ZR5A 5D8NA 5CBMA 4GUAA 4JCAA 5CB5A 1LAPA 4J5QA 3EKEA 4X2TA 2EWBA 4IQYA 3SIIA 3SIJA 3Q6ZA 4J4ZA 3VFQA 4TU0A 4J5RA 5FSVA 4JVVA 3SIGA 2EEEA 2JZFA 1ZR3A 5CMSA 1HJZA 1SPVA 3GPOA 4ESSA 1VHUA 2JZDA 4R7MA 3JRUA 4UMLA 2DX6A 4ABKA 2JZEA 4ZY2A 2BFRA 4J5SA 4K3NA 4KYBA
chains in the Genus database with same CATH topology
3H8GA 2J9AA 3KZWA 4K0CA 3KR4A 2XD7A 4ZYQA 4ZI6A 3V2BA 2AFCA 5HOLA 3H8FA 1LCPA 5DUSA 4D86A 3EWPA 3KR5A 2BFQA 4JGKA 5CB3A 5FSYA 1TXZA 3IIDA 4GVWA 3PEIA 3IIFA 3EWRA 3IJ3A 4ZY0A 2LGRA 2FAVA 2FXKA 3KQZA 3GQOA 5E3BA 4KSIA 3GQEA 4ETJA 5AILA 4GVVA 3EWQA 4ETKA 3Q71A 1BPMA 3EW5A 1GYTA 3JZTA 1LAMA 3EWOA 3GPGA 3H8EA 1NJRA 1TY8A 2ACFA 3V45A 3EJFA 5HIHA 3T8WA 3KQXA 4R76A 4ZX8A 4ABLA 5FSZA 1BLLE 1LANA 2L8RA 1BPNA 3GPQA 1YD9A 3EJGA 2X47A 2VRIA 2FG1A 4R6TA 3SIHA 3ETIA 4ZX9A 4ZY1A 5FSUA 5FSXA 4JLLA 1ZR5A 5D8NA 5CBMA 4GUAA 4JCAA 5CB5A 1LAPA 4J5QA 3EKEA 4X2TA 2EWBA 4IQYA 3SIIA 3SIJA 3Q6ZA 4J4ZA 3VFQA 4TU0A 4J5RA 5FSVA 4JVVA 3SIGA 2EEEA 1ZR3A 5CMSA 1HJZA 1SPVA 3GPOA 4ESSA 1VHUA 4R7MA 3JRUA 4UMLA 2DX6A 4ABKA 4ZY2A 2BFRA 4J5SA 4K3NA 4KYBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H8G A;  2J9A A;  3KZW A;  4K0C A;  3KR4 A;  2XD7 A;  4ZYQ A;  4ZI6 A;  3V2B A;  2AFC A;  5HOL A;  3H8F A;  1LCP A;  5DUS A;  4D86 A;  3EWP A;  3KR5 A;  2BFQ A;  4JGK A;  5CB3 A;  5FSY A;  1TXZ A;  3IID A;  4GVW A;  3PEI A;  3IIF A;  3EWR A;  3IJ3 A;  4ZY0 A;  2LGR A;  2FAV A;  2FXK A;  3KQZ A;  3GQO A;  5E3B A;  4KSI A;  3GQE A;  4ETJ A;  5AIL A;  4GVV A;  3EWQ A;  4ETK A;  3Q71 A;  1BPM A;  3EW5 A;  1GYT A;  3JZT A;  1LAM A;  3EWO A;  3GPG A;  3H8E A;  1NJR A;  1TY8 A;  2ACF A;  3V45 A;  3EJF A;  5HIH A;  3T8W A;  3KQX A;  4R76 A;  4ZX8 A;  4ABL A;  5FSZ A;  1BLL E;  1LAN A;  2L8R A;  1BPN A;  3GPQ A;  1YD9 A;  3EJG A;  2X47 A;  2VRI A;  2FG1 A;  4R6T A;  3SIH A;  3ETI A;  4ZX9 A;  4ZY1 A;  5FSU A;  5FSX A;  4JLL A;  1ZR5 A;  5D8N A;  5CBM A;  4GUA A;  4JCA A;  5CB5 A;  1LAP A;  4J5Q A;  3EKE A;  4X2T A;  2EWB A;  4IQY A;  3SII A;  3SIJ A;  3Q6Z A;  4J4Z A;  3VFQ A;  4TU0 A;  4J5R A;  5FSV A;  4JVV A;  3SIG A;  2EEE A;  1ZR3 A;  5CMS A;  1HJZ A;  1SPV A;  3GPO A;  4ESS A;  1VHU A;  4R7M A;  3JRU A;  4UML A;  2DX6 A;  4ABK A;  4ZY2 A;  2BFR A;  4J5S A;  4K3N A;  4KYB A; 
#chains in the Genus database with same CATH topology
 3H8G A;  2J9A A;  3KZW A;  4K0C A;  3KR4 A;  2XD7 A;  4ZYQ A;  4ZI6 A;  3V2B A;  2AFC A;  2WCT A;  5HOL A;  3H8F A;  1LCP A;  5DUS A;  2KQV A;  4D86 A;  2W2G A;  3EWP A;  3KR5 A;  2BFQ A;  4JGK A;  5CB3 A;  5FSY A;  1TXZ A;  3IID A;  4GVW A;  3PEI A;  3IIF A;  3EWR A;  3IJ3 A;  4ZY0 A;  2LGR A;  2FAV A;  2FXK A;  3KQZ A;  3GQO A;  5E3B A;  4KSI A;  3GQE A;  4ETJ A;  5AIL A;  4GVV A;  3EWQ A;  4ETK A;  3Q71 A;  1BPM A;  3EW5 A;  1GYT A;  3JZT A;  1LAM A;  3EWO A;  3GPG A;  3H8E A;  1NJR A;  1TY8 A;  2ACF A;  3V45 A;  3EJF A;  5HIH A;  3T8W A;  3KQX A;  4R76 A;  4ZX8 A;  4ABL A;  5FSZ A;  1BLL E;  1LAN A;  2L8R A;  2RNK A;  1BPN A;  3GPQ A;  1YD9 A;  3EJG A;  2X47 A;  2VRI A;  2FG1 A;  4R6T A;  3SIH A;  3ETI A;  4ZX9 A;  4ZY1 A;  5FSU A;  5FSX A;  4JLL A;  1ZR5 A;  5D8N A;  5CBM A;  4GUA A;  4JCA A;  5CB5 A;  1LAP A;  4J5Q A;  3EKE A;  4X2T A;  2EWB A;  4IQY A;  3SII A;  3SIJ A;  3Q6Z A;  4J4Z A;  3VFQ A;  4TU0 A;  4J5R A;  5FSV A;  4JVV A;  3SIG A;  2EEE A;  2JZF A;  1ZR3 A;  5CMS A;  1HJZ A;  1SPV A;  3GPO A;  4ESS A;  1VHU A;  2JZD A;  4R7M A;  3JRU A;  4UML A;  2DX6 A;  4ABK A;  2JZE A;  4ZY2 A;  2BFR A;  4J5S A;  4K3N A;  4KYB A; 
#chains in the Genus database with same CATH homology
 3H8G A;  2J9A A;  3KZW A;  4K0C A;  3KR4 A;  2XD7 A;  4ZYQ A;  4ZI6 A;  3V2B A;  2AFC A;  5HOL A;  3H8F A;  1LCP A;  5DUS A;  4D86 A;  3EWP A;  3KR5 A;  2BFQ A;  4JGK A;  5CB3 A;  5FSY A;  1TXZ A;  3IID A;  4GVW A;  3PEI A;  3IIF A;  3EWR A;  3IJ3 A;  4ZY0 A;  2LGR A;  2FAV A;  2FXK A;  3KQZ A;  3GQO A;  5E3B A;  4KSI A;  3GQE A;  4ETJ A;  5AIL A;  4GVV A;  3EWQ A;  4ETK A;  3Q71 A;  1BPM A;  3EW5 A;  1GYT A;  3JZT A;  1LAM A;  3EWO A;  3GPG A;  3H8E A;  1NJR A;  1TY8 A;  2ACF A;  3V45 A;  3EJF A;  5HIH A;  3T8W A;  3KQX A;  4R76 A;  4ZX8 A;  4ABL A;  5FSZ A;  1BLL E;  1LAN A;  2L8R A;  1BPN A;  3GPQ A;  1YD9 A;  3EJG A;  2X47 A;  2VRI A;  2FG1 A;  4R6T A;  3SIH A;  3ETI A;  4ZX9 A;  4ZY1 A;  5FSU A;  5FSX A;  4JLL A;  1ZR5 A;  5D8N A;  5CBM A;  4GUA A;  4JCA A;  5CB5 A;  1LAP A;  4J5Q A;  3EKE A;  4X2T A;  2EWB A;  4IQY A;  3SII A;  3SIJ A;  3Q6Z A;  4J4Z A;  3VFQ A;  4TU0 A;  4J5R A;  5FSV A;  4JVV A;  3SIG A;  2EEE A;  1ZR3 A;  5CMS A;  1HJZ A;  1SPV A;  3GPO A;  4ESS A;  1VHU A;  4R7M A;  3JRU A;  4UML A;  2DX6 A;  4ABK A;  4ZY2 A;  2BFR A;  4J5S A;  4K3N A;  4KYB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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