2AE8A

Crystal structure of imidazoleglycerol-phosphate dehydratase from staphylococcus aureus subsp. aureus n315
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
179
structure length
171
Chain Sequence
MIYQKQRTQLNISISDDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTAT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase
publication title Crystal Structure of Imidazoleglycerol-phosphate Dehydratase from Staphylococcus aureus subsp. aureus N315
rcsb
source organism Staphylococcus aureus subsp. aureus
total genus 49
structure length 171
sequence length 179
chains with identical sequence B, C, D, E, F
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2005-07-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2ae8A02
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2ae8A01
4MU0A 4QNJA 4MU1A 4QNKA 5DNXA 5ELWA 5EL9A 2F1DA 5DNLA 2AE8A 1RHYA 4GQUA 4MU3A 4LOMA 4LPFA 4MU4A 5EKWA
chains in the Genus database with same CATH superfamily
2UUCI 1OYSA 2NN6E 2OI2A 3PRYA 1B62A 1FJGE 4JI0E 5K36D 2ZBKB 3ZKBA 3T1HI 2PO0B 2VF3A 4MQYA 1HNWI 1Y4UA 2UU9E 1FWKA 2VQEE 4DUYI 4IZJB 4GKKE 1Y5YA 1H7SA 3GMEA 4KQVA 2LJPA 3CWVA 4KHPI 1N0UA 2O1TA 1N34I 1UDSA 1RHYA 4IZKA 4JI1I 2HFSA 4J3DA 3ZZUA 2ZITA 1NHIA 5JEAF 3HKMA 2A2CA 4DV6I 4USMA 2UUBI 2UUCE 4DU7A 4LCFA 2V2ZA 1HK7A 5DRQA 4URLA 2E5LI 4IFDC 4RPFA 5C0XC 4NBQA 3T1HE 3H4LA 2C37A 4IZKB 4X62I 1HNWE 1FNMA 1ZXMA 2C39A 2HFUA 5FLXQ 2JEBB 3J7AG 4DUYE 4MYUA 2HKJA 5GMEA 3NZKA 5LMUI 2IOQA 4DR5I 1VI7A 2NPFA 3QT7A 3V5RA 4KHPE 2PO2A 4JI4I 1N34E 4OO1E 1UDOA 1N0VC 4LFCI 2C37B 4JI1E 2V8PA 1N33I 2O1VA 3Q1QA 2C39B 2BA0G 2NN6D 4HXZA 5JEAE 4DV6E 2UUBE 2UXCI 5C0XA 5LMNI 4WUCA 4PRXA 2BA0D 2E5LE 1Z0BA 1NZ0A 1PVGA 4DR3I 4X62E 4NXNI 4HYMA 1WUUA 4LFBI 3OTOI 4IFDB 2VESA 4YY3E 5LMUE 4DPTA 5C0XB 4FWDA 2BA1D 1QZRA 1FKAE 3P76A 1Z0VA 4LCHA 4BA2B 5DRPA 4JI4E 1XNRI 4LFCE 4PRVA 1N33E 2PNMA 3PS1A 4GQUA 4MU3A 2UXCE 5LMNE 4DPXA 1S4EA 4JI5I 1ZM4A 3ZZ0A 2CVEA 3J80Q 4MU1A 2Z5CA 4DR3E 4R1FA 4NXNE 4LFBE 5L3JA 4FW6A 3OTOE 2GS8A 3K17A 1Z0EA 2GO4A 1MX0A 5K36A 4P52A 3CDJA 2WP8A 1KVKA 3U1YA 4DU8A 4IS9A 5JEAD 4JI7I 2Z5CB 1XNRE 1Y4SA 2A2DA 4YHHI 2UXDI 3H1CA 1PIEA 4MYTA 3B4TA 4QNJA 2BM1A 3P3EA 4FW4A 4DV7I 2WP8B 4XTJA 4JI5E 4ISAA 3WU4A 4DV0I 3J7AM 4FW5A 4IFDF 1Y60A 4LOMA 1ELOA 4DPYA 4N3OA 4JYAI 4OKGA 2NN6C 1B63A 2IOPA 1ZM2A 1FWLA 3WU5A 4DR4I 4JI6I 2V2VA 4OO1F 1H7UA 4JI7E 3P06A 4AIMA 1R6MA 5FLXC 2HK3A 4YHHE 2UXDE 2CGEA 1Y6ZA 1XMQI 3WU3A 4AQYI 2UUAI 4WUBA 1HNXI 4IZJD 5FWKA 2BM0A 1OYPA 2O1UA 2NN6A 3B82A 4IFDE 4DV3I 1VISA 5C0XE 3UHMA 4LF5I 1UDNA 4JYAE 1RR9A 3ZM7A 4DR2I 2BV3A 3LNUA 4DR1I 4DXLA 4DR4E 4JI6E 2X36A 1IBKI 4GKJI 2C38A 2NN6B 1PKPA 4I3HA 4DR7I 1H72C 1KTVA 3QT6A 3JAMC 4AQYE 2UUAE 1HNXE 2IESA 2PO2B 2O1WA 2AE8A 2WW4A 4JI3I 3PS3A 4K0KI 2BA1G 2R42A 1UEKA 4JI8I 5JEAC 2BR2A 2JEAA 3ZKDA 1I94I 4DV1I 4FWHA 4B3TI 4DV3E 4LF5E 4AM3A 3K85A 3P3GA 4DR2E 4DR5E 2J65A 3J80C 4DR1E 4P7AA 3GONA 3JAMQ 4B3MI 1IBKE 5K36C 4GKJE 4FW7A 1E3HA 5DRRA 2F1DA 2GQ0A 1OYRA 4LFAI 4WUDA 2JEAB 2BR2B 4MDTA 1N36I 1ZXNA 1IBMI 2VQFI 5JEAA 3HULA 3B78A 1EA6A 1XHKA 3M6AA 4IFDD 3L7ZA 5DNLA 3D4JA 5C0XD 1Z5AA 1HR0I 4JI3E 4LF6I 4K0KE 4JI8E 4DPUA 3B8HA 1I94E 4DV1E 4B3TE 4OO1D 4DPWA 1J5EI 3Q6NA 5JEAB 3PYEA 4USKA 5EL9A 1IBLI 3QT8A 4B3ME 3L7ZB 4Z7CA 3T1YI 4OZEA 4DUZI 4JI2I 2F4VI 4JG4A 1Z5BA 5A2QC 2WNRA 1MU5A 1N36E 1IBME 3P3CA 2JE6A 4BA1A 1FI4A 5K36B 1E3PA 3V2UC 2VQFE 2O3ZA 2J7KA 1R6LA 1Z5CA 4B3SI 4Z7YA 2Z5BA 1XMOI 1HR0E 3M85G 4LF6E 1Z0CA 5C0XF 3PS2A 5A2QQ 2E1RA 4FW3A 3DD6A 3WU6A 2HK2A 5IT9C 4BA1B 3M85D 1J5EE 2V34A 1IBLE 1UDQA 4ED4A 1N32I 4X64I 2Z5BB 3T1YE 4DUZE 4JI2E 2CZ9A 2F4VE 4NXMI 4DV5I 2DEJA 4OX9I 4LCGA 4DV7E 4U3DA 2PNZA 2UXBI 5IT9Q 4LF4I 4DV0E 1P42A 2GO3A 1HNZI 1Z0TA 4B3SE 4UT4A 1XMOE 1XNQI 1MG7A 3M7NG 4HY1A 1NHHA 3PYDA 3QT5A 2JEBA 5ELWA 1KKHA 4B3RI 5DROA 2X7IA 2PNZB 2DEIA 2ZM6I 3M7ND 1N32E 4X64E 4NXME 4DV5E 3HJCA 5K36F 5GMDA 4EMDA 4OX9E 4HACA 1OJ4A 1XMQE 1XXEA 2UXBE 2AJ4A 2V2QA 4YY3I 4LF7I 4OO1C 1NHJA 3ZZTA 4U3BA 4LF4E 3GLLA 4FW9A 1HNZE 2C38B 1ZM9A 1XNQE 4M1KA 1U2RA 5EKWA 1EI1A 4HACB 4AIDA 4IFDA 4B3RE 2EFGA 1Z0WA 4MU4A 4UTGA 2ZM6E 4X65I 5IWAI 2CG9A 3CDIA 4BA2A 2XEXA 4OO1A 5K36E 1USUA 1YH8A 4DR7E 4DV2I 2HHHI 1D6TA 4DR6I 2JT2A 1KIJA 4FN5A 4LF7E 4JV5I 4X66I 1Z0GA 4QNKA 4LF8I 1H73A 3KRNA 3LPSA 1Z59A 2PO1A 3PYGA 4OO1B 4LF9I 3F0NA 4MU0A 2IERA 4PU9A 5BR8I 4DV4I 2R3VA 1A6FA 4LPFA 3Q6MA 2NN6F 1K47A 1FJGI 2Q2EB 4ZVIA 4JI0I 4X65E 5IWAE 1ZM3A 4LFAE 5DNXA 3J81C 3LTOA 2PO1B 1YHCA 2UU9I 2VQEI 3K1JA 4DV2E 2HHHE 4GKKI 1H74A 4DR6E 4FWGA 1BKNA 4JV5E 4X66E 3GCMA 2Z5EA 3U1KA 1USVA 2HKEA 2PNLA 2PO0A 4LF8E 2WNRB 1DARA 4LF9E 3PYFA 3J81Q 1S16A 2JE6B 4IZJA 5BR8E 1RREA 4DV4E 5LL6R
chains in the Genus database with same CATH topology
4MU0A 4QNJA 4MU1A 4QNKA 5DNXA 5ELWA 5EL9A 2F1DA 5DNLA 2AE8A 1RHYA 4GQUA 4MU3A 4LOMA 4LPFA 4MU4A 5EKWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MU0 A;  4QNJ A;  4MU1 A;  4QNK A;  5DNX A;  5ELW A;  5EL9 A;  2F1D A;  5DNL A;  2AE8 A;  1RHY A;  4GQU A;  4MU3 A;  4LOM A;  4LPF A;  4MU4 A;  5EKW A; 
#chains in the Genus database with same CATH topology
 2UUC I;  1OYS A;  2NN6 E;  2OI2 A;  3PRY A;  1B62 A;  1FJG E;  4JI0 E;  5K36 D;  2ZBK B;  3ZKB A;  3T1H I;  2PO0 B;  2VF3 A;  4MQY A;  1HNW I;  1Y4U A;  2UU9 E;  1FWK A;  2VQE E;  4DUY I;  4IZJ B;  4GKK E;  1Y5Y A;  1H7S A;  3GME A;  4KQV A;  2LJP A;  3CWV A;  4KHP I;  1N0U A;  2O1T A;  1N34 I;  1UDS A;  1RHY A;  4IZK A;  4JI1 I;  2HFS A;  4J3D A;  3ZZU A;  2ZIT A;  1NHI A;  5JEA F;  3HKM A;  2A2C A;  4DV6 I;  4USM A;  2UUB I;  2UUC E;  4DU7 A;  4LCF A;  2V2Z A;  1HK7 A;  5DRQ A;  4URL A;  2E5L I;  4IFD C;  4RPF A;  5C0X C;  4NBQ A;  3T1H E;  3H4L A;  2C37 A;  4IZK B;  4X62 I;  1HNW E;  1FNM A;  1ZXM A;  2C39 A;  2HFU A;  5FLX Q;  2JEB B;  3J7A G;  4DUY E;  4MYU A;  2HKJ A;  5GME A;  3NZK A;  5LMU I;  2IOQ A;  4DR5 I;  1VI7 A;  2NPF A;  3QT7 A;  3V5R A;  4KHP E;  2PO2 A;  4JI4 I;  1N34 E;  4OO1 E;  1UDO A;  1N0V C;  4LFC I;  2C37 B;  4JI1 E;  2V8P A;  1N33 I;  2O1V A;  3Q1Q A;  2C39 B;  2BA0 G;  2NN6 D;  4HXZ A;  5JEA E;  4DV6 E;  2UUB E;  2UXC I;  5C0X A;  5LMN I;  4WUC A;  4PRX A;  2BA0 D;  2E5L E;  1Z0B A;  1NZ0 A;  1PVG A;  4DR3 I;  4X62 E;  4NXN I;  4HYM A;  1WUU A;  4LFB I;  3OTO I;  4IFD B;  2VES A;  4YY3 E;  5LMU E;  4DPT A;  5C0X B;  4FWD A;  2BA1 D;  1QZR A;  1FKA E;  3P76 A;  1Z0V A;  4LCH A;  4BA2 B;  5DRP A;  4JI4 E;  1XNR I;  4LFC E;  4PRV A;  1N33 E;  2PNM A;  3PS1 A;  4GQU A;  4MU3 A;  2UXC E;  5LMN E;  4DPX A;  1S4E A;  4JI5 I;  1ZM4 A;  3ZZ0 A;  2CVE A;  3J80 Q;  4MU1 A;  2Z5C A;  4DR3 E;  4R1F A;  4NXN E;  4LFB E;  5L3J A;  4FW6 A;  3OTO E;  2GS8 A;  3K17 A;  1Z0E A;  2GO4 A;  1MX0 A;  5K36 A;  4P52 A;  3CDJ A;  2WP8 A;  1KVK A;  3U1Y A;  4DU8 A;  4IS9 A;  5JEA D;  4JI7 I;  2Z5C B;  1XNR E;  1Y4S A;  2A2D A;  4YHH I;  2UXD I;  3H1C A;  1PIE A;  4MYT A;  3B4T A;  4QNJ A;  2BM1 A;  3P3E A;  4FW4 A;  4DV7 I;  2WP8 B;  4XTJ A;  4JI5 E;  4ISA A;  3WU4 A;  4DV0 I;  3J7A M;  4FW5 A;  4IFD F;  1Y60 A;  4LOM A;  1ELO A;  4DPY A;  4N3O A;  4JYA I;  4OKG A;  2NN6 C;  1B63 A;  2IOP A;  1ZM2 A;  1FWL A;  3WU5 A;  4DR4 I;  4JI6 I;  2V2V A;  4OO1 F;  1H7U A;  4JI7 E;  3P06 A;  4AIM A;  1R6M A;  5FLX C;  2HK3 A;  4YHH E;  2UXD E;  2CGE A;  1Y6Z A;  1XMQ I;  3WU3 A;  4AQY I;  2UUA I;  4WUB A;  1HNX I;  4IZJ D;  5FWK A;  2BM0 A;  1OYP A;  2O1U A;  2NN6 A;  3B82 A;  4IFD E;  4DV3 I;  1VIS A;  5C0X E;  3UHM A;  4LF5 I;  1UDN A;  4JYA E;  1RR9 A;  3ZM7 A;  4DR2 I;  2BV3 A;  3LNU A;  4DR1 I;  4DXL A;  4DR4 E;  4JI6 E;  2X36 A;  1IBK I;  4GKJ I;  2C38 A;  2NN6 B;  1PKP A;  4I3H A;  4DR7 I;  1H72 C;  1KTV A;  3QT6 A;  3JAM C;  4AQY E;  2UUA E;  1HNX E;  2IES A;  2PO2 B;  2O1W A;  2AE8 A;  2WW4 A;  4JI3 I;  3PS3 A;  4K0K I;  2BA1 G;  2R42 A;  1UEK A;  4JI8 I;  5JEA C;  2BR2 A;  2JEA A;  3ZKD A;  1I94 I;  4DV1 I;  4FWH A;  4B3T I;  4DV3 E;  4LF5 E;  4AM3 A;  3K85 A;  3P3G A;  4DR2 E;  4DR5 E;  2J65 A;  3J80 C;  4DR1 E;  4P7A A;  3GON A;  3JAM Q;  4B3M I;  1IBK E;  5K36 C;  4GKJ E;  4FW7 A;  1E3H A;  5DRR A;  2F1D A;  2GQ0 A;  1OYR A;  4LFA I;  4WUD A;  2JEA B;  2BR2 B;  4MDT A;  1N36 I;  1ZXN A;  1IBM I;  2VQF I;  5JEA A;  3HUL A;  3B78 A;  1EA6 A;  1XHK A;  3M6A A;  4IFD D;  3L7Z A;  5DNL A;  3D4J A;  5C0X D;  1Z5A A;  1HR0 I;  4JI3 E;  4LF6 I;  4K0K E;  4JI8 E;  4DPU A;  3B8H A;  1I94 E;  4DV1 E;  4B3T E;  4OO1 D;  4DPW A;  1J5E I;  3Q6N A;  5JEA B;  3PYE A;  4USK A;  5EL9 A;  1IBL I;  3QT8 A;  4B3M E;  3L7Z B;  4Z7C A;  3T1Y I;  4OZE A;  4DUZ I;  4JI2 I;  2F4V I;  4JG4 A;  1Z5B A;  5A2Q C;  2WNR A;  1MU5 A;  1N36 E;  1IBM E;  3P3C A;  2JE6 A;  4BA1 A;  1FI4 A;  5K36 B;  1E3P A;  3V2U C;  2VQF E;  2O3Z A;  2J7K A;  1R6L A;  1Z5C A;  4B3S I;  4Z7Y A;  2Z5B A;  1XMO I;  1HR0 E;  3M85 G;  4LF6 E;  1Z0C A;  5C0X F;  3PS2 A;  5A2Q Q;  2E1R A;  4FW3 A;  3DD6 A;  3WU6 A;  2HK2 A;  5IT9 C;  4BA1 B;  3M85 D;  1J5E E;  2V34 A;  1IBL E;  1UDQ A;  4ED4 A;  1N32 I;  4X64 I;  2Z5B B;  3T1Y E;  4DUZ E;  4JI2 E;  2CZ9 A;  2F4V E;  4NXM I;  4DV5 I;  2DEJ A;  4OX9 I;  4LCG A;  4DV7 E;  4U3D A;  2PNZ A;  2UXB I;  5IT9 Q;  4LF4 I;  4DV0 E;  1P42 A;  2GO3 A;  1HNZ I;  1Z0T A;  4B3S E;  4UT4 A;  1XMO E;  1XNQ I;  1MG7 A;  3M7N G;  4HY1 A;  1NHH A;  3PYD A;  3QT5 A;  2JEB A;  5ELW A;  1KKH A;  4B3R I;  5DRO A;  2X7I A;  2PNZ B;  2DEI A;  2ZM6 I;  3M7N D;  1N32 E;  4X64 E;  4NXM E;  4DV5 E;  3HJC A;  5K36 F;  5GMD A;  4EMD A;  4OX9 E;  4HAC A;  1OJ4 A;  1XMQ E;  1XXE A;  2UXB E;  2AJ4 A;  2V2Q A;  4YY3 I;  4LF7 I;  4OO1 C;  1NHJ A;  3ZZT A;  4U3B A;  4LF4 E;  3GLL A;  4FW9 A;  1HNZ E;  2C38 B;  1ZM9 A;  1XNQ E;  4M1K A;  1U2R A;  5EKW A;  1EI1 A;  4HAC B;  4AID A;  4IFD A;  4B3R E;  2EFG A;  1Z0W A;  4MU4 A;  4UTG A;  2ZM6 E;  4X65 I;  5IWA I;  2CG9 A;  3CDI A;  4BA2 A;  2XEX A;  4OO1 A;  5K36 E;  1USU A;  1YH8 A;  4DR7 E;  4DV2 I;  2HHH I;  1D6T A;  4DR6 I;  2JT2 A;  1KIJ A;  4FN5 A;  4LF7 E;  4JV5 I;  4X66 I;  1Z0G A;  4QNK A;  4LF8 I;  1H73 A;  3KRN A;  3LPS A;  1Z59 A;  2PO1 A;  3PYG A;  4OO1 B;  4LF9 I;  3F0N A;  4MU0 A;  2IER A;  4PU9 A;  5BR8 I;  4DV4 I;  2R3V A;  1A6F A;  4LPF A;  3Q6M A;  2NN6 F;  1K47 A;  1FJG I;  2Q2E B;  4ZVI A;  4JI0 I;  4X65 E;  5IWA E;  1ZM3 A;  4LFA E;  5DNX A;  3J81 C;  3LTO A;  2PO1 B;  1YHC A;  2UU9 I;  2VQE I;  3K1J A;  4DV2 E;  2HHH E;  4GKK I;  1H74 A;  4DR6 E;  4FWG A;  1BKN A;  4JV5 E;  4X66 E;  3GCM A;  2Z5E A;  3U1K A;  1USV A;  2HKE A;  2PNL A;  2PO0 A;  4LF8 E;  2WNR B;  1DAR A;  4LF9 E;  3PYF A;  3J81 Q;  1S16 A;  2JE6 B;  4IZJ A;  5BR8 E;  1RRE A;  4DV4 E;  5LL6 R; 
#chains in the Genus database with same CATH homology
 4MU0 A;  4QNJ A;  4MU1 A;  4QNK A;  5DNX A;  5ELW A;  5EL9 A;  2F1D A;  5DNL A;  2AE8 A;  1RHY A;  4GQU A;  4MU3 A;  4LOM A;  4LPF A;  4MU4 A;  5EKW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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