2AH0D

Crystal structure of the carbinolamine intermediate in the reductive half-reaction of aromatic amine dehydrogenase (aadh) with tryptamine. monoclinic form
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
Knots found
sequence length
109
structure length
108
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Aromatic amine dehydrogenase
publication title Atomic description of an enzyme reaction dominated by proton tunneling
pubmed doi rcsb
total genus 26
structure length 108
sequence length 109
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2005-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2ah0D00
3ORVC 2IAAB 2OJYD 2GC4B 4FA5C 3SWSC 2J56L 3SLEC 4O1QC 3RN1C 4FB1C 2AGXD 2HJ4D 2I0SD 3PXSC 2BBKL 3PXTC 4Y5RC 4L3GC 2MTAL 4FA1C 4FA4C 2MADL 2OK4D 2AH0D 1MAEL 2IUPD 2AH1D 1MAFL 3RN0C 2HXCD 3C75L 2OK6D 4FANC 2AGLD 4K3IC 3SJLC 1MG2B 2IURD 3L4MC 3RMZC 2J55L 1MG3B 2I0TD 2OIZD 3L4OC 3PXWC 1MDAL 2H47B 4L3HC 4FAVC 2H3XB 2AGYD 2J57K 2AGWD 4FA9C 2HJBD 2HKMD 2HKRD 2IUVD 3RLMC 3SVWC 2IUQD 2AGZD 3SXTC 2GC7B 4L1QC 2Q7QD 2I0RD
chains in the Genus database with same CATH superfamily
3ORVC 2IAAB 2OJYD 2GC4B 4FA5C 3SWSC 2J56L 3SLEC 4O1QC 3RN1C 4FB1C 2AGXD 2HJ4D 2I0SD 3PXSC 2BBKL 3PXTC 4Y5RC 4L3GC 2MTAL 4FA1C 4FA4C 2MADL 2OK4D 2AH0D 1MAEL 2IUPD 2AH1D 1MAFL 3RN0C 2HXCD 3C75L 2OK6D 4FANC 2AGLD 4K3IC 3SJLC 1MG2B 2IURD 3L4MC 3RMZC 2J55L 1MG3B 2I0TD 2OIZD 3L4OC 3PXWC 1MDAL 2H47B 4L3HC 4FAVC 2H3XB 2AGYD 2J57K 2AGWD 4FA9C 2HJBD 2HKMD 2HKRD 2IUVD 3RLMC 3SVWC 2IUQD 2AGZD 3SXTC 2GC7B 4L1QC 2Q7QD 2I0RD
chains in the Genus database with same CATH topology
3ORVC 2IAAB 2OJYD 2GC4B 4FA5C 3SWSC 2J56L 3SLEC 4O1QC 3RN1C 4FB1C 2AGXD 2HJ4D 2I0SD 3PXSC 2BBKL 3PXTC 4Y5RC 4L3GC 2MTAL 4FA1C 4FA4C 2MADL 2OK4D 2AH0D 1MAEL 2IUPD 2AH1D 1MAFL 3RN0C 2HXCD 3C75L 2OK6D 4FANC 2AGLD 4K3IC 3SJLC 1MG2B 2IURD 3L4MC 3RMZC 2J55L 1MG3B 2I0TD 2OIZD 3L4OC 3PXWC 1MDAL 2H47B 4L3HC 4FAVC 2H3XB 2AGYD 2J57K 2AGWD 4FA9C 2HJBD 2HKMD 2HKRD 2IUVD 3RLMC 3SVWC 2IUQD 2AGZD 3SXTC 2GC7B 4L1QC 2Q7QD 2I0RD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ORV C;  2IAA B;  2OJY D;  2GC4 B;  4FA5 C;  3SWS C;  2J56 L;  3SLE C;  4O1Q C;  3RN1 C;  4FB1 C;  2AGX D;  2HJ4 D;  2I0S D;  3PXS C;  2BBK L;  3PXT C;  4Y5R C;  4L3G C;  2MTA L;  4FA1 C;  4FA4 C;  2MAD L;  2OK4 D;  2AH0 D;  1MAE L;  2IUP D;  2AH1 D;  1MAF L;  3RN0 C;  2HXC D;  3C75 L;  2OK6 D;  4FAN C;  2AGL D;  4K3I C;  3SJL C;  1MG2 B;  2IUR D;  3L4M C;  3RMZ C;  2J55 L;  1MG3 B;  2I0T D;  2OIZ D;  3L4O C;  3PXW C;  1MDA L;  2H47 B;  4L3H C;  4FAV C;  2H3X B;  2AGY D;  2J57 K;  2AGW D;  4FA9 C;  2HJB D;  2HKM D;  2HKR D;  2IUV D;  3RLM C;  3SVW C;  2IUQ D;  2AGZ D;  3SXT C;  2GC7 B;  4L1Q C;  2Q7Q D;  2I0R D; 
#chains in the Genus database with same CATH topology
 3ORV C;  2IAA B;  2OJY D;  2GC4 B;  4FA5 C;  3SWS C;  2J56 L;  3SLE C;  4O1Q C;  3RN1 C;  4FB1 C;  2AGX D;  2HJ4 D;  2I0S D;  3PXS C;  2BBK L;  3PXT C;  4Y5R C;  4L3G C;  2MTA L;  4FA1 C;  4FA4 C;  2MAD L;  2OK4 D;  2AH0 D;  1MAE L;  2IUP D;  2AH1 D;  1MAF L;  3RN0 C;  2HXC D;  3C75 L;  2OK6 D;  4FAN C;  2AGL D;  4K3I C;  3SJL C;  1MG2 B;  2IUR D;  3L4M C;  3RMZ C;  2J55 L;  1MG3 B;  2I0T D;  2OIZ D;  3L4O C;  3PXW C;  1MDA L;  2H47 B;  4L3H C;  4FAV C;  2H3X B;  2AGY D;  2J57 K;  2AGW D;  4FA9 C;  2HJB D;  2HKM D;  2HKR D;  2IUV D;  3RLM C;  3SVW C;  2IUQ D;  2AGZ D;  3SXT C;  2GC7 B;  4L1Q C;  2Q7Q D;  2I0R D; 
#chains in the Genus database with same CATH homology
 3ORV C;  2IAA B;  2OJY D;  2GC4 B;  4FA5 C;  3SWS C;  2J56 L;  3SLE C;  4O1Q C;  3RN1 C;  4FB1 C;  2AGX D;  2HJ4 D;  2I0S D;  3PXS C;  2BBK L;  3PXT C;  4Y5R C;  4L3G C;  2MTA L;  4FA1 C;  4FA4 C;  2MAD L;  2OK4 D;  2AH0 D;  1MAE L;  2IUP D;  2AH1 D;  1MAF L;  3RN0 C;  2HXC D;  3C75 L;  2OK6 D;  4FAN C;  2AGL D;  4K3I C;  3SJL C;  1MG2 B;  2IUR D;  3L4M C;  3RMZ C;  2J55 L;  1MG3 B;  2I0T D;  2OIZ D;  3L4O C;  3PXW C;  1MDA L;  2H47 B;  4L3H C;  4FAV C;  2H3X B;  2AGY D;  2J57 K;  2AGW D;  4FA9 C;  2HJB D;  2HKM D;  2HKR D;  2IUV D;  3RLM C;  3SVW C;  2IUQ D;  2AGZ D;  3SXT C;  2GC7 B;  4L1Q C;  2Q7Q D;  2I0R D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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