2AJHA

Crystal structure of the editing domain of e. coli leucyl-trna synthetase complexes with methionine
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
186
structure length
186
Chain Sequence
EGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGERKV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
molecule keywords Leucyl-tRNA synthetase
publication title Crystal structures of the editing domain of Escherichia coli leucyl-tRNA synthetase and its complexes with Met and Ile reveal a lock-and-key mechanism for amino acid discrimination
pubmed doi rcsb
source organism Escherichia coli
total genus 47
structure length 186
sequence length 186
chains with identical sequence B
ec nomenclature ec 6.1.1.4: Leucine--tRNA ligase.
pdb deposition date 2005-08-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.740.10 Alpha Beta Alpha-Beta Complex Isoleucyl-tRNA Synthetase; domain 2 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 2ajhA00
4K48A 1WZ2A 2AJHA 1JZQA 3PZ5A 4AS1A 4CQNA 3ZGZA 1WK9A 1WNYA 1UE0A 1GAXA 1QU2A 2V0CA 5AGHA 4ARCA 5AGRA 1UDZA 1ILEA 5AGTA 1OBHA 1H3NA 5AGIA 4AQ7A 1OBCA 4ARIA 3PZ0A 3ZJVA 2BTEA 1JZSA 2WFEA 1WKBA 1QU3A 2AJGA 2WFGA 2AJIA 1WK8A 5AGJA 3ZJUA 1WNZA 3PZ6A 2V0GA 2WFDA 5AGSA 4K47A 1FFYA 1IVSA 2BYTA 1WKAA 3ZJTA 3O0AA
chains in the Genus database with same CATH superfamily
4K48A 1WZ2A 2AJHA 1JZQA 3PZ5A 4AS1A 4CQNA 3ZGZA 1WK9A 1WNYA 1UE0A 1GAXA 1QU2A 2V0CA 5AGHA 4ARCA 5AGRA 1UDZA 1ILEA 5AGTA 1OBHA 1H3NA 5AGIA 4AQ7A 1OBCA 4ARIA 3PZ0A 3ZJVA 2BTEA 1JZSA 2WFEA 1WKBA 1QU3A 2AJGA 2WFGA 2AJIA 1WK8A 5AGJA 3ZJUA 1WNZA 3PZ6A 2V0GA 2WFDA 5AGSA 4K47A 1FFYA 1IVSA 2BYTA 1WKAA 3ZJTA 3O0AA
chains in the Genus database with same CATH topology
4K48A 1WZ2A 2AJHA 1JZQA 3PZ5A 4AS1A 4CQNA 3ZGZA 1WK9A 1WNYA 1UE0A 1GAXA 1QU2A 2V0CA 5AGHA 4ARCA 5AGRA 1UDZA 1ILEA 5AGTA 1OBHA 1H3NA 5AGIA 4AQ7A 1OBCA 4ARIA 3PZ0A 3ZJVA 2BTEA 1JZSA 2WFEA 1WKBA 1QU3A 2AJGA 2WFGA 2AJIA 1WK8A 5AGJA 3ZJUA 1WNZA 3PZ6A 2V0GA 2WFDA 5AGSA 4K47A 1FFYA 1IVSA 2BYTA 1WKAA 3ZJTA 3O0AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4K48 A;  1WZ2 A;  2AJH A;  1JZQ A;  3PZ5 A;  4AS1 A;  4CQN A;  3ZGZ A;  1WK9 A;  1WNY A;  1UE0 A;  1GAX A;  1QU2 A;  2V0C A;  5AGH A;  4ARC A;  5AGR A;  1UDZ A;  1ILE A;  5AGT A;  1OBH A;  1H3N A;  5AGI A;  4AQ7 A;  1OBC A;  4ARI A;  3PZ0 A;  3ZJV A;  2BTE A;  1JZS A;  2WFE A;  1WKB A;  1QU3 A;  2AJG A;  2WFG A;  2AJI A;  1WK8 A;  5AGJ A;  3ZJU A;  1WNZ A;  3PZ6 A;  2V0G A;  2WFD A;  5AGS A;  4K47 A;  1FFY A;  1IVS A;  2BYT A;  1WKA A;  3ZJT A;  3O0A A; 
#chains in the Genus database with same CATH topology
 4K48 A;  1WZ2 A;  2AJH A;  1JZQ A;  3PZ5 A;  4AS1 A;  4CQN A;  3ZGZ A;  1WK9 A;  1WNY A;  1UE0 A;  1GAX A;  1QU2 A;  2V0C A;  5AGH A;  4ARC A;  5AGR A;  1UDZ A;  1ILE A;  5AGT A;  1OBH A;  1H3N A;  5AGI A;  4AQ7 A;  1OBC A;  4ARI A;  3PZ0 A;  3ZJV A;  2BTE A;  1JZS A;  2WFE A;  1WKB A;  1QU3 A;  2AJG A;  2WFG A;  2AJI A;  1WK8 A;  5AGJ A;  3ZJU A;  1WNZ A;  3PZ6 A;  2V0G A;  2WFD A;  5AGS A;  4K47 A;  1FFY A;  1IVS A;  2BYT A;  1WKA A;  3ZJT A;  3O0A A; 
#chains in the Genus database with same CATH homology
 4K48 A;  1WZ2 A;  2AJH A;  1JZQ A;  3PZ5 A;  4AS1 A;  4CQN A;  3ZGZ A;  1WK9 A;  1WNY A;  1UE0 A;  1GAX A;  1QU2 A;  2V0C A;  5AGH A;  4ARC A;  5AGR A;  1UDZ A;  1ILE A;  5AGT A;  1OBH A;  1H3N A;  5AGI A;  4AQ7 A;  1OBC A;  4ARI A;  3PZ0 A;  3ZJV A;  2BTE A;  1JZS A;  2WFE A;  1WKB A;  1QU3 A;  2AJG A;  2WFG A;  2AJI A;  1WK8 A;  5AGJ A;  3ZJU A;  1WNZ A;  3PZ6 A;  2V0G A;  2WFD A;  5AGS A;  4K47 A;  1FFY A;  1IVS A;  2BYT A;  1WKA A;  3ZJT A;  3O0A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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