2AJIA

Crystal structure of the editing domain of e. coli leucyl-trna synthetase complexes with isoleucine
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
186
structure length
186
Chain Sequence
EGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGERKV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
molecule keywords Leucyl-tRNA synthetase
publication title Crystal structures of the editing domain of Escherichia coli leucyl-tRNA synthetase and its complexes with Met and Ile reveal a lock-and-key mechanism for amino acid discrimination
pubmed doi rcsb
source organism Escherichia coli
total genus 47
structure length 186
sequence length 186
chains with identical sequence B
ec nomenclature ec 6.1.1.4: Leucine--tRNA ligase.
pdb deposition date 2005-08-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.740.10 Alpha Beta Alpha-Beta Complex Isoleucyl-tRNA Synthetase; domain 2 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 2ajiA00
1JZSA 3O0AA 1OBHA 1WKAA 5AGHA 1WNYA 4ARCA 5AGIA 1JZQA 3ZJVA 1WNZA 4ARIA 1IVSA 2V0GA 1FFYA 2AJGA 1WK8A 1QU3A 2AJHA 3PZ5A 5AGRA 4AQ7A 4CQNA 1OBCA 2V0CA 1UE0A 4AS1A 2WFEA 4K48A 5AGSA 5AGTA 2BTEA 1QU2A 2AJIA 1WZ2A 3ZGZA 1GAXA 3ZJTA 3PZ6A 3ZJUA 1UDZA 4K47A 2WFDA 2WFGA 3PZ0A 1H3NA 2BYTA 1WK9A 5AGJA 1ILEA 1WKBA
chains in the Genus database with same CATH superfamily
1JZSA 3O0AA 1OBHA 1WKAA 5AGHA 1WNYA 4ARCA 5AGIA 1JZQA 3ZJVA 1WNZA 4ARIA 1IVSA 2V0GA 1FFYA 2AJGA 1WK8A 1QU3A 2AJHA 3PZ5A 5AGRA 4AQ7A 4CQNA 1OBCA 2V0CA 1UE0A 4AS1A 2WFEA 4K48A 5AGSA 5AGTA 2BTEA 1QU2A 2AJIA 1WZ2A 3ZGZA 1GAXA 3ZJTA 3PZ6A 3ZJUA 1UDZA 4K47A 2WFDA 2WFGA 3PZ0A 1H3NA 2BYTA 1WK9A 5AGJA 1ILEA 1WKBA
chains in the Genus database with same CATH topology
1JZSA 3O0AA 1OBHA 1WKAA 5AGHA 1WNYA 4ARCA 5AGIA 1JZQA 3ZJVA 1WNZA 4ARIA 1IVSA 2V0GA 1FFYA 2AJGA 1WK8A 1QU3A 2AJHA 3PZ5A 5AGRA 4AQ7A 4CQNA 1OBCA 2V0CA 1UE0A 4AS1A 2WFEA 4K48A 5AGSA 5AGTA 2BTEA 1QU2A 2AJIA 1WZ2A 3ZGZA 1GAXA 3ZJTA 3PZ6A 3ZJUA 1UDZA 4K47A 2WFDA 2WFGA 3PZ0A 1H3NA 2BYTA 1WK9A 5AGJA 1ILEA 1WKBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JZS A;  3O0A A;  1OBH A;  1WKA A;  5AGH A;  1WNY A;  4ARC A;  5AGI A;  1JZQ A;  3ZJV A;  1WNZ A;  4ARI A;  1IVS A;  2V0G A;  1FFY A;  2AJG A;  1WK8 A;  1QU3 A;  2AJH A;  3PZ5 A;  5AGR A;  4AQ7 A;  4CQN A;  1OBC A;  2V0C A;  1UE0 A;  4AS1 A;  2WFE A;  4K48 A;  5AGS A;  5AGT A;  2BTE A;  1QU2 A;  2AJI A;  1WZ2 A;  3ZGZ A;  1GAX A;  3ZJT A;  3PZ6 A;  3ZJU A;  1UDZ A;  4K47 A;  2WFD A;  2WFG A;  3PZ0 A;  1H3N A;  2BYT A;  1WK9 A;  5AGJ A;  1ILE A;  1WKB A; 
#chains in the Genus database with same CATH topology
 1JZS A;  3O0A A;  1OBH A;  1WKA A;  5AGH A;  1WNY A;  4ARC A;  5AGI A;  1JZQ A;  3ZJV A;  1WNZ A;  4ARI A;  1IVS A;  2V0G A;  1FFY A;  2AJG A;  1WK8 A;  1QU3 A;  2AJH A;  3PZ5 A;  5AGR A;  4AQ7 A;  4CQN A;  1OBC A;  2V0C A;  1UE0 A;  4AS1 A;  2WFE A;  4K48 A;  5AGS A;  5AGT A;  2BTE A;  1QU2 A;  2AJI A;  1WZ2 A;  3ZGZ A;  1GAX A;  3ZJT A;  3PZ6 A;  3ZJU A;  1UDZ A;  4K47 A;  2WFD A;  2WFG A;  3PZ0 A;  1H3N A;  2BYT A;  1WK9 A;  5AGJ A;  1ILE A;  1WKB A; 
#chains in the Genus database with same CATH homology
 1JZS A;  3O0A A;  1OBH A;  1WKA A;  5AGH A;  1WNY A;  4ARC A;  5AGI A;  1JZQ A;  3ZJV A;  1WNZ A;  4ARI A;  1IVS A;  2V0G A;  1FFY A;  2AJG A;  1WK8 A;  1QU3 A;  2AJH A;  3PZ5 A;  5AGR A;  4AQ7 A;  4CQN A;  1OBC A;  2V0C A;  1UE0 A;  4AS1 A;  2WFE A;  4K48 A;  5AGS A;  5AGT A;  2BTE A;  1QU2 A;  2AJI A;  1WZ2 A;  3ZGZ A;  1GAX A;  3ZJT A;  3PZ6 A;  3ZJU A;  1UDZ A;  4K47 A;  2WFD A;  2WFG A;  3PZ0 A;  1H3N A;  2BYT A;  1WK9 A;  5AGJ A;  1ILE A;  1WKB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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