2ARQA

Human plasminogen activator inhibitor-2.[loop (66-98) deletion mutant] complexed with peptide n-acetyl-teaaagdggvmtgr-oh
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
380
structure length
360
Chain Sequence
DLCVANTLFALNLFKHLAKASPTQNLFLSPWSISSTMAMVYMGSRGSTEDQMASVLQFNEDKIHSSFRSLSSAINASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDFLECAEEARKKINSWVKTQTKGKIPNLLPEGSVDGDTRMVLVNAVYFKGKWKTPFEKKLLFPFRVNSAQRTPVQMMYLREKLNIGYIEDLKAQILELPYAGDVSMFLLLPDADVSTGLELLESEITYDKLNKWTSKDKMAEDEVEVYIPQFKLEEHYELRSILRSMGMEDAFNKGRANFSGMSERNDLFLSEVFHQAMVDVNEEGTGRTGHGGPQFVADHPFLFLIMHKITNCILFFGRFSSP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor/peptide
molecule keywords Plasminogen activator inhibitor-2
publication title Plasminogen activator inhibitor-2 is highly tolerant to P8 residue substitution--implications for serpin mechanistic model and prediction of nsSNP activities
pubmed doi rcsb
source organism Homo sapiens
total genus 103
structure length 360
sequence length 380
ec nomenclature
pdb deposition date 2005-08-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 2arqA02
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 2arqA01
1QMNA 3LE2A 2H4PA 1HLEA 3CWMA 2PEFA 4AU3A 1E05I 1JMOA 1XQGA 1QLPA 1C8OA 4ZK3A 1C5GA 5CE0A 4RSQA 1A7CA 3DLWA 4YIAA 1OPHA 1DZGI 1NQ9I 2ANTI 9APIA 5INWA 4Y3KA 4DY0A 4AQHA 2WXXA 1OO8A 3NDFA 2VDYA 1DZGL 1OC0A 3NDDA 4X30A 1HP7A 1DZHI 4IC0A 1JVQI 1AZXI 2VDXA 3PB1I 3ZHAA 1K9OI 4EB1I 4ZK0A 1OYHI 3T1PA 1DZHL 1TB6I 1D5SA 2ARQA 1ATHA 4Y40A 2WY1A 3B9FI 1JJOC 1OVAB 2R9YA 1XU8A 4EB1L 4C41A 7APIA 1OYHL 1JTIA 1SEKA 2CEOA 2HIJI 4AU3B 2DUTA 2HI9A 2WXWA 3PZFA 3UT3A 4PYWA 1BR8I 5CDZA 4G8OA 1BY7A 1IZ2A 1WZ9A 2XN3A 1PSIA 2HIJL 1DVMA 2ZNHA 4DY7C 3DRUA 4AU2A 1ANTI 5HGCA 3DRMA 2WXZC 5BRRI 8APIA 2OAYA 4AFXA 1EZXA 2WXZA 2QUGA 2ARRA 2WY0C 3F5NA 1R1LI 1UHGA 1QMBA 1T1FA 3H5CA 2B5TI 1LJ5A 2BEHI 2XN7A 2VH4A 1IMVA 3DY0A 3EVJI 3NDAA 3VVJA 1LK6I 2V95A 1JRRA 3CAAA 3R4LA 4P0FA 1XQJA 3Q02A 5IO1A 2BEHL 2D26A 2B4XI 2GD4C 1DB2A 3Q03A 4G8RA 4IF8A 4RO9A 4C49A 3STOA 1E04I 3F02A 4AJTA 4ROAA 3OZQA 3NE4A 2XN5A 5CDXA 1KCTA 3KCGI 1SNGA 1YXAA 4GA7A 2B4XL 9PAIA 4AU4A 2RIVA 1ATTA 1E03I 1M93B 2PEEA 3EOXA 3FGQA 2RIWA 1JMJA 2ACHA 5EI0A 2H4RA 1DVNA 1B3KA 2H4QA 1F0CA 2XN6A 1AS4A 1LQ8A 4ROBA 4AJUA 2WXYC 4BB2A 2ZV6A 4P0OA 4DTEA 2OL2A 1OVAC 1SR5A 3F1SA 5C98A 4CAAA 1OVAA 4KDSA 3CWLA 4R9IA 3LW2A 3CVMA 1ATUA 1MTPA
chains in the Genus database with same CATH superfamily
1QMNA 3LE2A 2H4PA 1HLEA 3CWMA 2PEFA 4AU3A 1E05I 1JMOA 1XQGA 1QLPA 1C8OA 4ZK3A 1C5GA 5CE0A 4RSQA 1A7CA 3DLWA 4YIAA 1OPHA 1DZGI 1NQ9I 2ANTI 9APIA 5INWA 4Y3KA 4DY0A 4AQHA 2WXXA 1OO8A 3NDFA 2VDYA 1DZGL 1OC0A 3NDDA 4X30A 1HP7A 1DZHI 4IC0A 1JVQI 1AZXI 2VDXA 3PB1I 3ZHAA 1K9OI 4EB1I 4ZK0A 1OYHI 3T1PA 1DZHL 1TB6I 1D5SA 2ARQA 1ATHA 4Y40A 2WY1A 3B9FI 1JJOC 1OVAB 2R9YA 1XU8A 4EB1L 4C41A 7APIA 1OYHL 1JTIA 1SEKA 2CEOA 2HIJI 4AU3B 2DUTA 2HI9A 2WXWA 3PZFA 3UT3A 4PYWA 1BR8I 5CDZA 4G8OA 1BY7A 1IZ2A 1WZ9A 2XN3A 1PSIA 2HIJL 1DVMA 2ZNHA 4DY7C 3DRUA 4AU2A 1ANTI 5HGCA 3DRMA 2WXZC 5BRRI 8APIA 2OAYA 4AFXA 1EZXA 2WXZA 2QUGA 2ARRA 2WY0C 3F5NA 1R1LI 1UHGA 1QMBA 1T1FA 3H5CA 2B5TI 1LJ5A 2BEHI 2XN7A 2VH4A 1IMVA 3DY0A 3EVJI 3NDAA 3VVJA 1LK6I 2V95A 1JRRA 3CAAA 3R4LA 4P0FA 1XQJA 3Q02A 5IO1A 2BEHL 2D26A 2B4XI 2GD4C 1DB2A 3Q03A 4G8RA 4IF8A 4RO9A 4C49A 3STOA 1E04I 3F02A 4AJTA 4ROAA 3OZQA 3NE4A 2XN5A 5CDXA 1KCTA 3KCGI 1SNGA 1YXAA 4GA7A 2B4XL 9PAIA 4AU4A 2RIVA 1ATTA 1E03I 1M93B 2PEEA 3EOXA 3FGQA 2RIWA 1JMJA 2ACHA 5EI0A 2H4RA 1DVNA 1B3KA 2H4QA 1F0CA 2XN6A 1AS4A 1LQ8A 4ROBA 4AJUA 2WXYC 4BB2A 2ZV6A 4P0OA 4DTEA 2OL2A 1OVAC 1SR5A 3F1SA 5C98A 4CAAA 1OVAA 4KDSA 3CWLA 4R9IA 3LW2A 3CVMA 1ATUA 1MTPA
chains in the Genus database with same CATH topology
1QMNA 3LE2A 2H4PA 1HLEA 3CWMA 2PEFA 4AU3A 1E05I 1JMOA 1XQGA 1QLPA 1C8OA 4ZK3A 1C5GA 5CE0A 4RSQA 1A7CA 3DLWA 4YIAA 1OPHA 1DZGI 1NQ9I 2ANTI 9APIA 5INWA 4Y3KA 4DY0A 4AQHA 2WXXA 1OO8A 3NDFA 2VDYA 1DZGL 1OC0A 3NDDA 4X30A 1HP7A 1DZHI 4IC0A 1JVQI 1AZXI 2VDXA 3PB1I 3ZHAA 1K9OI 4EB1I 4ZK0A 1OYHI 3T1PA 1DZHL 1TB6I 1D5SA 2ARQA 1ATHA 4Y40A 2WY1A 3B9FI 1JJOC 1OVAB 2R9YA 1XU8A 4EB1L 4C41A 7APIA 1OYHL 1JTIA 1SEKA 2CEOA 2HIJI 4AU3B 2DUTA 2HI9A 2WXWA 3PZFA 3UT3A 4PYWA 1BR8I 5CDZA 4G8OA 1BY7A 1IZ2A 1WZ9A 2XN3A 1PSIA 2HIJL 1DVMA 2ZNHA 4DY7C 3DRUA 4AU2A 1ANTI 5HGCA 3DRMA 2WXZC 5BRRI 8APIA 2OAYA 4AFXA 1EZXA 2WXZA 2QUGA 2ARRA 2WY0C 3F5NA 1R1LI 1UHGA 1QMBA 1T1FA 3H5CA 2B5TI 1LJ5A 2BEHI 2XN7A 2VH4A 1IMVA 3DY0A 3EVJI 3NDAA 3VVJA 1LK6I 2V95A 1JRRA 3CAAA 3R4LA 4P0FA 1XQJA 3Q02A 5IO1A 2BEHL 2D26A 2B4XI 2GD4C 1DB2A 3Q03A 4G8RA 4IF8A 4RO9A 4C49A 3STOA 1E04I 3F02A 4AJTA 4ROAA 3OZQA 3NE4A 2XN5A 5CDXA 1KCTA 3KCGI 1SNGA 1YXAA 4GA7A 2B4XL 9PAIA 4AU4A 2RIVA 1ATTA 1E03I 1M93B 2PEEA 3EOXA 3FGQA 2RIWA 1JMJA 2ACHA 5EI0A 2H4RA 1DVNA 1B3KA 2H4QA 1F0CA 2XN6A 1AS4A 1LQ8A 4ROBA 4AJUA 2WXYC 4BB2A 2ZV6A 4P0OA 4DTEA 2OL2A 1OVAC 1SR5A 3F1SA 5C98A 4CAAA 1OVAA 4KDSA 3CWLA 4R9IA 3LW2A 3CVMA 1ATUA 1MTPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QMN A;  3LE2 A;  2H4P A;  1HLE A;  3CWM A;  2PEF A;  4AU3 A;  1E05 I;  1JMO A;  1XQG A;  1QLP A;  1C8O A;  4ZK3 A;  1C5G A;  5CE0 A;  4RSQ A;  1A7C A;  3DLW A;  4YIA A;  1OPH A;  1DZG I;  1NQ9 I;  2ANT I;  9API A;  5INW A;  4Y3K A;  4DY0 A;  4AQH A;  2WXX A;  1OO8 A;  3NDF A;  2VDY A;  1DZG L;  1OC0 A;  3NDD A;  4X30 A;  1HP7 A;  1DZH I;  4IC0 A;  1JVQ I;  1AZX I;  2VDX A;  3PB1 I;  3ZHA A;  1K9O I;  4EB1 I;  4ZK0 A;  1OYH I;  3T1P A;  1DZH L;  1TB6 I;  1D5S A;  2ARQ A;  1ATH A;  4Y40 A;  2WY1 A;  3B9F I;  1JJO C;  1OVA B;  2R9Y A;  1XU8 A;  4EB1 L;  4C41 A;  7API A;  1OYH L;  1JTI A;  1SEK A;  2CEO A;  2HIJ I;  4AU3 B;  2DUT A;  2HI9 A;  2WXW A;  3PZF A;  3UT3 A;  4PYW A;  1BR8 I;  5CDZ A;  4G8O A;  1BY7 A;  1IZ2 A;  1WZ9 A;  2XN3 A;  1PSI A;  2HIJ L;  1DVM A;  2ZNH A;  4DY7 C;  3DRU A;  4AU2 A;  1ANT I;  5HGC A;  3DRM A;  2WXZ C;  5BRR I;  8API A;  2OAY A;  4AFX A;  1EZX A;  2WXZ A;  2QUG A;  2ARR A;  2WY0 C;  3F5N A;  1R1L I;  1UHG A;  1QMB A;  1T1F A;  3H5C A;  2B5T I;  1LJ5 A;  2BEH I;  2XN7 A;  2VH4 A;  1IMV A;  3DY0 A;  3EVJ I;  3NDA A;  3VVJ A;  1LK6 I;  2V95 A;  1JRR A;  3CAA A;  3R4L A;  4P0F A;  1XQJ A;  3Q02 A;  5IO1 A;  2BEH L;  2D26 A;  2B4X I;  2GD4 C;  1DB2 A;  3Q03 A;  4G8R A;  4IF8 A;  4RO9 A;  4C49 A;  3STO A;  1E04 I;  3F02 A;  4AJT A;  4ROA A;  3OZQ A;  3NE4 A;  2XN5 A;  5CDX A;  1KCT A;  3KCG I;  1SNG A;  1YXA A;  4GA7 A;  2B4X L;  9PAI A;  4AU4 A;  2RIV A;  1ATT A;  1E03 I;  1M93 B;  2PEE A;  3EOX A;  3FGQ A;  2RIW A;  1JMJ A;  2ACH A;  5EI0 A;  2H4R A;  1DVN A;  1B3K A;  2H4Q A;  1F0C A;  2XN6 A;  1AS4 A;  1LQ8 A;  4ROB A;  4AJU A;  2WXY C;  4BB2 A;  2ZV6 A;  4P0O A;  4DTE A;  2OL2 A;  1OVA C;  1SR5 A;  3F1S A;  5C98 A;  4CAA A;  1OVA A;  4KDS A;  3CWL A;  4R9I A;  3LW2 A;  3CVM A;  1ATU A;  1MTP A; 
#chains in the Genus database with same CATH topology
 1QMN A;  3LE2 A;  2H4P A;  1HLE A;  3CWM A;  2PEF A;  4AU3 A;  1E05 I;  1JMO A;  1XQG A;  1QLP A;  1C8O A;  4ZK3 A;  1C5G A;  5CE0 A;  4RSQ A;  1A7C A;  3DLW A;  4YIA A;  1OPH A;  1DZG I;  1NQ9 I;  2ANT I;  9API A;  5INW A;  4Y3K A;  4DY0 A;  4AQH A;  2WXX A;  1OO8 A;  3NDF A;  2VDY A;  1DZG L;  1OC0 A;  3NDD A;  4X30 A;  1HP7 A;  1DZH I;  4IC0 A;  1JVQ I;  1AZX I;  2VDX A;  3PB1 I;  3ZHA A;  1K9O I;  4EB1 I;  4ZK0 A;  1OYH I;  3T1P A;  1DZH L;  1TB6 I;  1D5S A;  2ARQ A;  1ATH A;  4Y40 A;  2WY1 A;  3B9F I;  1JJO C;  1OVA B;  2R9Y A;  1XU8 A;  4EB1 L;  4C41 A;  7API A;  1OYH L;  1JTI A;  1SEK A;  2CEO A;  2HIJ I;  4AU3 B;  2DUT A;  2HI9 A;  2WXW A;  3PZF A;  3UT3 A;  4PYW A;  1BR8 I;  5CDZ A;  4G8O A;  1BY7 A;  1IZ2 A;  1WZ9 A;  2XN3 A;  1PSI A;  2HIJ L;  1DVM A;  2ZNH A;  4DY7 C;  3DRU A;  4AU2 A;  1ANT I;  5HGC A;  3DRM A;  2WXZ C;  5BRR I;  8API A;  2OAY A;  4AFX A;  1EZX A;  2WXZ A;  2QUG A;  2ARR A;  2WY0 C;  3F5N A;  1R1L I;  1UHG A;  1QMB A;  1T1F A;  3H5C A;  2B5T I;  1LJ5 A;  2BEH I;  2XN7 A;  2VH4 A;  1IMV A;  3DY0 A;  3EVJ I;  3NDA A;  3VVJ A;  1LK6 I;  2V95 A;  1JRR A;  3CAA A;  3R4L A;  4P0F A;  1XQJ A;  3Q02 A;  5IO1 A;  2BEH L;  2D26 A;  2B4X I;  2GD4 C;  1DB2 A;  3Q03 A;  4G8R A;  4IF8 A;  4RO9 A;  4C49 A;  3STO A;  1E04 I;  3F02 A;  4AJT A;  4ROA A;  3OZQ A;  3NE4 A;  2XN5 A;  5CDX A;  1KCT A;  3KCG I;  1SNG A;  1YXA A;  4GA7 A;  2B4X L;  9PAI A;  4AU4 A;  2RIV A;  1ATT A;  1E03 I;  1M93 B;  2PEE A;  3EOX A;  3FGQ A;  2RIW A;  1JMJ A;  2ACH A;  5EI0 A;  2H4R A;  1DVN A;  1B3K A;  2H4Q A;  1F0C A;  2XN6 A;  1AS4 A;  1LQ8 A;  4ROB A;  4AJU A;  2WXY C;  4BB2 A;  2ZV6 A;  4P0O A;  4DTE A;  2OL2 A;  1OVA C;  1SR5 A;  3F1S A;  5C98 A;  4CAA A;  1OVA A;  4KDS A;  3CWL A;  4R9I A;  3LW2 A;  3CVM A;  1ATU A;  1MTP A; 
#chains in the Genus database with same CATH homology
 1QMN A;  3LE2 A;  2H4P A;  1HLE A;  3CWM A;  2PEF A;  4AU3 A;  1E05 I;  1JMO A;  1XQG A;  1QLP A;  1C8O A;  4ZK3 A;  1C5G A;  5CE0 A;  4RSQ A;  1A7C A;  3DLW A;  4YIA A;  1OPH A;  1DZG I;  1NQ9 I;  2ANT I;  9API A;  5INW A;  4Y3K A;  4DY0 A;  4AQH A;  2WXX A;  1OO8 A;  3NDF A;  2VDY A;  1DZG L;  1OC0 A;  3NDD A;  4X30 A;  1HP7 A;  1DZH I;  4IC0 A;  1JVQ I;  1AZX I;  2VDX A;  3PB1 I;  3ZHA A;  1K9O I;  4EB1 I;  4ZK0 A;  1OYH I;  3T1P A;  1DZH L;  1TB6 I;  1D5S A;  2ARQ A;  1ATH A;  4Y40 A;  2WY1 A;  3B9F I;  1JJO C;  1OVA B;  2R9Y A;  1XU8 A;  4EB1 L;  4C41 A;  7API A;  1OYH L;  1JTI A;  1SEK A;  2CEO A;  2HIJ I;  4AU3 B;  2DUT A;  2HI9 A;  2WXW A;  3PZF A;  3UT3 A;  4PYW A;  1BR8 I;  5CDZ A;  4G8O A;  1BY7 A;  1IZ2 A;  1WZ9 A;  2XN3 A;  1PSI A;  2HIJ L;  1DVM A;  2ZNH A;  4DY7 C;  3DRU A;  4AU2 A;  1ANT I;  5HGC A;  3DRM A;  2WXZ C;  5BRR I;  8API A;  2OAY A;  4AFX A;  1EZX A;  2WXZ A;  2QUG A;  2ARR A;  2WY0 C;  3F5N A;  1R1L I;  1UHG A;  1QMB A;  1T1F A;  3H5C A;  2B5T I;  1LJ5 A;  2BEH I;  2XN7 A;  2VH4 A;  1IMV A;  3DY0 A;  3EVJ I;  3NDA A;  3VVJ A;  1LK6 I;  2V95 A;  1JRR A;  3CAA A;  3R4L A;  4P0F A;  1XQJ A;  3Q02 A;  5IO1 A;  2BEH L;  2D26 A;  2B4X I;  2GD4 C;  1DB2 A;  3Q03 A;  4G8R A;  4IF8 A;  4RO9 A;  4C49 A;  3STO A;  1E04 I;  3F02 A;  4AJT A;  4ROA A;  3OZQ A;  3NE4 A;  2XN5 A;  5CDX A;  1KCT A;  3KCG I;  1SNG A;  1YXA A;  4GA7 A;  2B4X L;  9PAI A;  4AU4 A;  2RIV A;  1ATT A;  1E03 I;  1M93 B;  2PEE A;  3EOX A;  3FGQ A;  2RIW A;  1JMJ A;  2ACH A;  5EI0 A;  2H4R A;  1DVN A;  1B3K A;  2H4Q A;  1F0C A;  2XN6 A;  1AS4 A;  1LQ8 A;  4ROB A;  4AJU A;  2WXY C;  4BB2 A;  2ZV6 A;  4P0O A;  4DTE A;  2OL2 A;  1OVA C;  1SR5 A;  3F1S A;  5C98 A;  4CAA A;  1OVA A;  4KDS A;  3CWL A;  4R9I A;  3LW2 A;  3CVM A;  1ATU A;  1MTP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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