2AUSB

Crystal structure of the archaeal box h/aca srnp nop10-cbf5 complex
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
53
structure length
53
Chain Sequence
RIRKCPKCGRYTLKETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLKRELLGIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase/structural protein
molecule keywords pseudouridine synthase
publication title Crystal structure determination and site-directed mutagenesis of the Pyrococcus abyssi aCBF5-aNOP10 complex reveal crucial roles of the C-terminal domains of both proteins in H/ACA sRNP activity
pubmed doi rcsb
source organism Pyrococcus abyssi
total genus 7
structure length 53
sequence length 53
chains with identical sequence D
ec nomenclature
pdb deposition date 2005-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF04135 Nop10p Nucleolar RNA-binding protein, Nop10p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.40 Mainly Beta Single Sheet Rubrerythrin, domain 2 H/ACA ribonucleoprotein complex, subunit Nop10 2ausB00
3HAXC 3HJWB 3LWOB 3LWQB 2AUSB 3HJYB 2APOB 2EY4E 2HVYC 3MQKB 3LWVB 3LWPB 3LWRB 2AQCA 2RFKB
chains in the Genus database with same CATH superfamily
4C2M1 1ODHA 1B2JA 2M6OA 4A3BL 1IW7D 3VPBE 5DM71 3RZDL 2CR8A 3HAXC 1QCVA 2JA8L 1S2ZA 3QQCE 1TWAL 3GTOL 1PFVA 2K2DA 2XJRA 1B2OA 4A3ML 2XJQA 1QYBA 1IRNA 3KYXA 2NVXL 4C3IL 4POGA 1K83L 3S2HL 3HOZL 5M5WL 4V196 4AR6A 1RDGA 1YUXA 2AYJA 2M4YA 4WFN1 3A44A 2RFKB 2E2IL 2LCQA 1R9TL 4AI0A 3LWVB 1FHHA 4G6BA 1OWCA 1DVBA 2R93L 3KYVA 1LTLA 3MQKB 3CQZL 2AQCA 5AN9H 2RDVA 4A3FL 3H9BA 3SS2A 2ZIXA 1YK5A 3KYYA 2M4VA 3S16L 2L0ZA 4AYBP 2E2HL 3B0AB 1Y1WL 2JA6L 1QQTA 1R0IA 1B71A 1S30A 5EIOC 3S15L 4GS7D 1E8JA 4AI3A 2V0FA 1IU5A 1R0FA 3WWLA 2WB1P 4AI1A 1PFYA 3KYWA 4E6YA 5MFZA 7RXNA 3M4OL 1CADA 5IYCL 2V3BB 3P8BA 1R0HA 4AR3A 3S1ML 2YU9L 5RXNA 3HOWL 1RWDA 5M3FL 2R7ZL 1Y1VL 1F4LA 2VUML 5M3ML 1IU6A 1IROA 3S2DL 3HKZP 1YV1A 4QIWP 4A3DL 2PPTA 1B13A 1TWFL 3FDJA 2BE5D 1VCXA 1BQ8A 2CKCA 2KN9A 3HJYB 2Z3RB 6RXNA 2QL0A 1TWGL 1BQ9A 3ZG6A 1RDVA 5GAGc 5C44L 4AHZA 3PO2L 1RYQA 1WJVA 1TWHL 5GAEc 3RZ6A 2R92L 5IYBL 2HVYC 3LNLA 1FHMA 2JI3A 2PMZP 1Z92B 2ERJA 3RZOL 3HOXL 2KKDA 4YWMA 2A68D 5IY0A 4AR4A 4B8CD 3LWOB 2GMGA 1RB9A 1LKOA 3S1NL 3JR7A 3GTLL 5M5YL 3P2AA 5C3EL 2WAQP 2A69D 3FKIL 5C4XL 2EY4E 3M3YL 4AI2A 4ZN3B 4BY7L 1VZHA 2V0EA 4A93L 1ZRPA 1NXGA 1NXEA 4A3EL 1LKMA 3PWFA 4JAEA 1H7VA 4JAGA 2HR5A 3HJWB 4POFA 1VZGA 1R0GA 4A3IL 2Y0SP 4TVMA 3GTGL 1S24A 3S1QL 4A3KL 3MPSA 4X6AL 4JAFA 4A3GL 2H12A 3QVDA 4K9FA 3H99A 1BE7A 2DSXA 1BFYA 3PZAA 4U671 4AR5A 2A6HD 3PIP1 5IYDL 5AI3A 1SMMA 1C09A 3K35A 3LPEB 5M5XL 2CKAA 3B08B 5GAHc 3H0GL 3HOUL 5IP9L 4A3CL 3LWQB 5DM61 5MLC3 3WWNB 2J9UB 2PVEA 2MS3A 5MFPA 3S14L 4C3HL 1DX8A 5JVH1 1NNQA 1SMUA 2PSMC 2C6AA 2B5ID 5AI2A 3S17L 1WCML 2B63L 3LWPB 1PFUA 5FJ8L 3I4NL 4AHWA 2XJPA 4XXBB 5MF6A 4BBRL 3GTQL 3GTKL 1I6HL 3J7Z1 3PKJA 2JA7L 4AHYA 3GTML 2APOB 4TPUA 5EINC 2A6ED 4YWLA 4RXNA 2JA5L 1T9PA 1TWCL 2XJSA 4BXXL 1CAAA 2C6BA 1LKPA 4LHNA 2XJTA 4UY81 1BRFA 1I3QL 3PL5A 2PVXA 1I50L 3J7Y1 1YUZA 2PYAA 2Z3QB 2O5JD 3IU3I 1VZIA 1PFWA 5H1Sc 2NVQL 3GTPL 4BBSL 2NVTL 5C4JL 4LHLA 3H97A 1T9OA 3RYGA 1OWBA 4BY1L 3PO3L 4ME3A 4Y52L 3PIO1 5K2ME 5IP7L 3LWRB 3K7AL 4Y7NL 3H3VM 1YK4A 3MSUA 4JADA 3HOVL 3S1RL 2ERSA 3PKIA 2M6PA 1JYBA 5GADc 3HOYL 5FLML 1RYTA 3GTJL 3RZTA 8RXNA 4C3JL 4A3LL 3KYUA 4XGHA 5JVG1 2AUSB 2VL6A 3I4ML 1SMWA 2NVYL 2JI1A 3NFPI 4AHXA 2NYDA 3H9CA 2XJVA 2E2JL 4A3JL 2XJUA 5MGNA 1SFOL 1PZXA 1P7PA 2JI2A 4ZN1B 1R0JA 1T9QA
chains in the Genus database with same CATH topology
3HAXC 3HJWB 3LWOB 3LWQB 2AUSB 3HJYB 2APOB 2EY4E 2HVYC 3MQKB 3LWVB 3LWPB 3LWRB 2AQCA 2RFKB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HAX C;  3HJW B;  3LWO B;  3LWQ B;  2AUS B;  3HJY B;  2APO B;  2EY4 E;  2HVY C;  3MQK B;  3LWV B;  3LWP B;  3LWR B;  2AQC A;  2RFK B; 
#chains in the Genus database with same CATH topology
 4C2M 1;  1ODH A;  1B2J A;  2M6O A;  4A3B L;  1IW7 D;  3VPB E;  5DM7 1;  3RZD L;  2CR8 A;  3HAX C;  1QCV A;  2JA8 L;  1S2Z A;  3QQC E;  1TWA L;  3GTO L;  1PFV A;  2K2D A;  2XJR A;  1B2O A;  4A3M L;  2XJQ A;  1QYB A;  1IRN A;  3KYX A;  2NVX L;  4C3I L;  4POG A;  1K83 L;  3S2H L;  3HOZ L;  5M5W L;  4V19 6;  4AR6 A;  1RDG A;  1YUX A;  2AYJ A;  2M4Y A;  4WFN 1;  3A44 A;  2RFK B;  2E2I L;  2LCQ A;  1R9T L;  4AI0 A;  3LWV B;  1FHH A;  4G6B A;  1OWC A;  1DVB A;  2R93 L;  3KYV A;  1LTL A;  3MQK B;  3CQZ L;  2AQC A;  5AN9 H;  2RDV A;  4A3F L;  3H9B A;  3SS2 A;  2ZIX A;  1YK5 A;  3KYY A;  2M4V A;  3S16 L;  2L0Z A;  4AYB P;  2E2H L;  3B0A B;  1Y1W L;  2JA6 L;  1QQT A;  1R0I A;  1B71 A;  1S30 A;  5EIO C;  3S15 L;  4GS7 D;  1E8J A;  4AI3 A;  2V0F A;  1IU5 A;  1R0F A;  3WWL A;  2WB1 P;  4AI1 A;  1PFY A;  3KYW A;  4E6Y A;  5MFZ A;  7RXN A;  3M4O L;  1CAD A;  5IYC L;  2V3B B;  3P8B A;  1R0H A;  4AR3 A;  3S1M L;  2YU9 L;  5RXN A;  3HOW L;  1RWD A;  5M3F L;  2R7Z L;  1Y1V L;  1F4L A;  2VUM L;  5M3M L;  1IU6 A;  1IRO A;  3S2D L;  3HKZ P;  1YV1 A;  4QIW P;  4A3D L;  2PPT A;  1B13 A;  1TWF L;  3FDJ A;  2BE5 D;  1VCX A;  1BQ8 A;  2CKC A;  2KN9 A;  3HJY B;  2Z3R B;  6RXN A;  2QL0 A;  1TWG L;  1BQ9 A;  3ZG6 A;  1RDV A;  5GAG c;  5C44 L;  4AHZ A;  3PO2 L;  1RYQ A;  1WJV A;  1TWH L;  5GAE c;  3RZ6 A;  2R92 L;  5IYB L;  2HVY C;  3LNL A;  1FHM A;  2JI3 A;  2PMZ P;  1Z92 B;  2ERJ A;  3RZO L;  3HOX L;  2KKD A;  4YWM A;  2A68 D;  5IY0 A;  4AR4 A;  4B8C D;  3LWO B;  2GMG A;  1RB9 A;  1LKO A;  3S1N L;  3JR7 A;  3GTL L;  5M5Y L;  3P2A A;  5C3E L;  2WAQ P;  2A69 D;  3FKI L;  5C4X L;  2EY4 E;  3M3Y L;  4AI2 A;  4ZN3 B;  4BY7 L;  1VZH A;  2V0E A;  4A93 L;  1ZRP A;  1NXG A;  1NXE A;  4A3E L;  1LKM A;  3PWF A;  4JAE A;  1H7V A;  4JAG A;  2HR5 A;  3HJW B;  4POF A;  1VZG A;  1R0G A;  4A3I L;  2Y0S P;  4TVM A;  3GTG L;  1S24 A;  3S1Q L;  4A3K L;  3MPS A;  4X6A L;  4JAF A;  4A3G L;  2H12 A;  3QVD A;  4K9F A;  3H99 A;  1BE7 A;  2DSX A;  1BFY A;  3PZA A;  4U67 1;  4AR5 A;  2A6H D;  3PIP 1;  5IYD L;  5AI3 A;  1SMM A;  1C09 A;  3K35 A;  3LPE B;  5M5X L;  2CKA A;  3B08 B;  5GAH c;  3H0G L;  3HOU L;  5IP9 L;  4A3C L;  3LWQ B;  5DM6 1;  5MLC 3;  3WWN B;  2J9U B;  2PVE A;  2MS3 A;  5MFP A;  3S14 L;  4C3H L;  1DX8 A;  5JVH 1;  1NNQ A;  1SMU A;  2PSM C;  2C6A A;  2B5I D;  5AI2 A;  3S17 L;  1WCM L;  2B63 L;  3LWP B;  1PFU A;  5FJ8 L;  3I4N L;  4AHW A;  2XJP A;  4XXB B;  5MF6 A;  4BBR L;  3GTQ L;  3GTK L;  1I6H L;  3J7Z 1;  3PKJ A;  2JA7 L;  4AHY A;  3GTM L;  2APO B;  4TPU A;  5EIN C;  2A6E D;  4YWL A;  4RXN A;  2JA5 L;  1T9P A;  1TWC L;  2XJS A;  4BXX L;  1CAA A;  2C6B A;  1LKP A;  4LHN A;  2XJT A;  4UY8 1;  1BRF A;  1I3Q L;  3PL5 A;  2PVX A;  1I50 L;  3J7Y 1;  1YUZ A;  2PYA A;  2Z3Q B;  2O5J D;  3IU3 I;  1VZI A;  1PFW A;  5H1S c;  2NVQ L;  3GTP L;  4BBS L;  2NVT L;  5C4J L;  4LHL A;  3H97 A;  1T9O A;  3RYG A;  1OWB A;  4BY1 L;  3PO3 L;  4ME3 A;  4Y52 L;  3PIO 1;  5K2M E;  5IP7 L;  3LWR B;  3K7A L;  4Y7N L;  3H3V M;  1YK4 A;  3MSU A;  4JAD A;  3HOV L;  3S1R L;  2ERS A;  3PKI A;  2M6P A;  1JYB A;  5GAD c;  3HOY L;  5FLM L;  1RYT A;  3GTJ L;  3RZT A;  8RXN A;  4C3J L;  4A3L L;  3KYU A;  4XGH A;  5JVG 1;  2AUS B;  2VL6 A;  3I4M L;  1SMW A;  2NVY L;  2JI1 A;  3NFP I;  4AHX A;  2NYD A;  3H9C A;  2XJV A;  2E2J L;  4A3J L;  2XJU A;  5MGN A;  1SFO L;  1PZX A;  1P7P A;  2JI2 A;  4ZN1 B;  1R0J A;  1T9Q A; 
#chains in the Genus database with same CATH homology
 3HAX C;  3HJW B;  3LWO B;  3LWQ B;  2AUS B;  3HJY B;  2APO B;  2EY4 E;  2HVY C;  3MQK B;  3LWV B;  3LWP B;  3LWR B;  2AQC A;  2RFK B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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