2C08A

Rat endophilin a1 bar domain
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
204
structure length
204
Chain Sequence
EGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords SH3-CONTAINING GRB2-LIKE PROTEIN 2
publication title Mechanism of Endophilin N-Bar Domain-Mediated Membrane Curvature.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 73
structure length 204
sequence length 204
ec nomenclature ec 2.3.1.-:
pdb deposition date 2005-08-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 2c08A00
1ZWWA 2D4CA 2Z0VA 3HAIA 5C5BB 1I4DA 2RAIA 3G9GA 2X3VA 5C5BA 1WDZA 3Q0KA 1URUA 2RAKA 3OK8A 4I1QA 2EFKA 2YKTA 3ACOA 4AKVA 3QNIA 3SYVA 2C08A 4H8SA 3HAJA 3Q84A 2Z0OA 4NSWA 3ABHA 2Q13A 1I4LA 4WPCA 4AVMA 2X3XA 4ATMA 4DCNC 3SOGA 2Z0NA 2Q12A 1I49A 3PLTA 4FZSA 4NQIA 1Y2OA 2EFLA 4BNEA 2RAJA 1X03A 1X04A 2X3WA 2ELBA 4WPEA 3M3WA 2D1LA 3CAZA 3QWEA 3QE6A 4DYLA 3HAHA 3LLLA 3DYTA 2FICA 1I4TA 2V0OA 3I2WA
chains in the Genus database with same CATH superfamily
4NPHA 3BUDA 2ALWA 2WYIA 3BUBA 4AZGA 2YKTA 4AKVA 2QKWA 2ZXQA 2YIAA 3OHXM 5KBPA 4G6QA 2OZNB 4KIKB 4JN4A 2RAJA 3KDRA 2F1AA 3QWEA 3HAHA 3GI7A 2JNKA 1I4DA 4HYBA 2RAKA 3I39X 1HTYA 3BVXA 1ZYLA 2YIVX 3CZNA 3B53X 1E2UA 2QXLA 4EZYA 2YI9A 4E3CA 4EZTA 2F7RA 2YL8A 4EZOA 2FYVA 3ZEDA 1OA1A 1LQ7A 3T47A 1TQUA 2F1BA 4IWOA 2Q13A 4IM2A 3I2WA 2KHOA 3KAWA 2RAIA 3DDFA 4M0MA 3B51X 3KAVA 3SYVA 3DX1A 5FLEX 2YL5A 3B52X 4AVMA 4JWDA 4HR1B 4D8JA 3EJPA 2X3WA 1X04A 2ELBA 4IW0A 1SU7A 4IM0A 2D4CA 1DKXA 5E84A 1O7DC 3DDGA 3EJQA 3EJTA 1DKZA 2LM0A 4JL9A 2Z8YA 2Z0VA 3T46A 3DPQA 3CV5A 4R5GA 2F7QA 4AZBA 3BVVA 3EJRA 2EFKA 4EZWA 3D52A 4IWPA 2ND0A 4AZIA 1GN9A 1R5EA 3VEBA 1PS3A 4E81A 3CAZA 3RV0A 4UDYX 4FZPA 1E9VA 3HAIA 4AZCA 1HWWA 1WDZA 3Q0KA 1URUA 2GA9D 2F7OA 4PO2A 1R34A 3EJSA 4EZUA 4JWIA 4EZPA 3QNIA 1O7DB 2C08A 2JNSA 3D51A 2YL6A 2F7PA 1UPXA 1QX1A 2Z0NA 2Q12A 2LXYA 1Y2OA 2EFLA 1E1DA 2YLLA 1R33A 4DYLA 3LLLA 4R5LA 3D4YA 1TQVA 3T49A 4I1QA 1GNTA 3F7WA 1TQTA 4DCNC 1I49A 3L3PA 4FZSA 4NQIA 4BNEA 2WINM 1TQSA 2D1LA 4EZSA 1I4TA 1QWUA 5FIGA 2OW6A 5C5BB 3QA8A 3LVTA 4F00A 3RPMA 4ATMA 3UITA 3QE6A 1ZWWA 3DPOA 3BVUA 4EZNA 4R5IA 1TQWA 3O3OB 3OWGA 4HY9A 4JNFA 2PMRA 4AZ7A 3C7NA 4WPEA 2QFFA 3EJUA 2YIBA 3CKDA 2X3VA 4AZCB 3OK8A 3D2EA 3D2FA 2OW7A 2YI8A 3ABHA 4HR1A 1I4LA 4FZOA 4JLCA 4EZXA 1SUFA 1SU6A 1QWNA 4UDXX 4EZZA 4JNEA 4F01A 2YLAA 1OAOA 2WYHA 4H6IA 4AZ5A 3G9GA 3T4AG 2NCZA 1MJGA 3Q84A 4IM3A 2RT6A 3RV1A 3DPPA 3DX3A 2X3XA 4AZ6A 2YL9A 3BVTA 3PLTA 3O3MB 3BUPA 4IWQA 1X03A 3D50A 3BVWA 2GF4A 4H6HA 2EWFA 4JWCA 1GNLA 2V0OA 3DX2A 3T48A 3DX0A 3VKHA 3BUIA 2ND1A 1JQKA 2EX3B 1SU8A 3ER8C 4R5JA 3BUQA 3L3OM 2PY6A 4KIKA 2X5CA 1OA0A 4B9QA 3DX4A 3CVRA 5TKYA 3CZSA 3HAJA 2N3KA 3QNJA 3A98A 4R5KA 2OO2A 3LMFA 3SOGA 2F18A 3ER9B 3VEAA 4EZVA 2FICA 2MI7A 2O0I1 3I01A 4AZHA 3ACOA 4FM3A 4EZQA 1U00A 4NSWA 4WPCA 1YWMA 3I04A 4EZRA 3FD9A 2OBLA 2GAFD 3DYTA 5C5BA 4JWEA 1DKYA 4H8SA 3BLBA 2Z0OA 2OBMA 1W9MA 3D4ZA 3M3WA 3ERCC 3O3NB 1HXKA
chains in the Genus database with same CATH topology
1ZWWA 2D4CA 2Z0VA 3HAIA 5C5BB 1I4DA 2RAIA 3G9GA 2X3VA 5C5BA 1WDZA 3Q0KA 1URUA 2RAKA 3OK8A 4I1QA 2EFKA 2YKTA 3ACOA 4AKVA 3QNIA 3SYVA 2C08A 4H8SA 3HAJA 3Q84A 2Z0OA 4NSWA 3ABHA 2Q13A 1I4LA 4WPCA 4AVMA 2X3XA 4ATMA 4DCNC 3SOGA 2Z0NA 2Q12A 1I49A 3PLTA 4FZSA 4NQIA 1Y2OA 2EFLA 4BNEA 2RAJA 1X03A 1X04A 2X3WA 2ELBA 4WPEA 3M3WA 2D1LA 3CAZA 3QWEA 3QE6A 4DYLA 3HAHA 3LLLA 3DYTA 2FICA 1I4TA 2V0OA 3I2WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZWW A;  2D4C A;  2Z0V A;  3HAI A;  5C5B B;  1I4D A;  2RAI A;  3G9G A;  2X3V A;  5C5B A;  1WDZ A;  3Q0K A;  1URU A;  2RAK A;  3OK8 A;  4I1Q A;  2EFK A;  2YKT A;  3ACO A;  4AKV A;  3QNI A;  3SYV A;  2C08 A;  4H8S A;  3HAJ A;  3Q84 A;  2Z0O A;  4NSW A;  3ABH A;  2Q13 A;  1I4L A;  4WPC A;  4AVM A;  2X3X A;  4ATM A;  4DCN C;  3SOG A;  2Z0N A;  2Q12 A;  1I49 A;  3PLT A;  4FZS A;  4NQI A;  1Y2O A;  2EFL A;  4BNE A;  2RAJ A;  1X03 A;  1X04 A;  2X3W A;  2ELB A;  4WPE A;  3M3W A;  2D1L A;  3CAZ A;  3QWE A;  3QE6 A;  4DYL A;  3HAH A;  3LLL A;  3DYT A;  2FIC A;  1I4T A;  2V0O A;  3I2W A; 
#chains in the Genus database with same CATH topology
 4NPH A;  3BUD A;  2ALW A;  2WYI A;  3BUB A;  4AZG A;  2YKT A;  4AKV A;  2QKW A;  2ZXQ A;  2YIA A;  3OHX M;  5KBP A;  4G6Q A;  2OZN B;  4KIK B;  4JN4 A;  2RAJ A;  3KDR A;  2F1A A;  3QWE A;  3HAH A;  3GI7 A;  2JNK A;  1I4D A;  4HYB A;  2RAK A;  3I39 X;  1HTY A;  3BVX A;  1ZYL A;  2YIV X;  3CZN A;  3B53 X;  1E2U A;  2QXL A;  4EZY A;  2YI9 A;  4E3C A;  4EZT A;  2F7R A;  2YL8 A;  4EZO A;  2FYV A;  3ZED A;  1OA1 A;  1LQ7 A;  3T47 A;  1TQU A;  2F1B A;  4IWO A;  2Q13 A;  4IM2 A;  3I2W A;  2KHO A;  3KAW A;  2RAI A;  3DDF A;  4M0M A;  3B51 X;  3KAV A;  3SYV A;  3DX1 A;  5FLE X;  2YL5 A;  3B52 X;  4AVM A;  4JWD A;  4HR1 B;  4D8J A;  3EJP A;  2X3W A;  1X04 A;  2ELB A;  4IW0 A;  1SU7 A;  4IM0 A;  2D4C A;  1DKX A;  5E84 A;  1O7D C;  3DDG A;  3EJQ A;  3EJT A;  1DKZ A;  2LM0 A;  4JL9 A;  2Z8Y A;  2Z0V A;  3T46 A;  3DPQ A;  3CV5 A;  4R5G A;  2F7Q A;  4AZB A;  3BVV A;  3EJR A;  2EFK A;  4EZW A;  3D52 A;  4IWP A;  2ND0 A;  4AZI A;  1GN9 A;  1R5E A;  3VEB A;  1PS3 A;  4E81 A;  3CAZ A;  3RV0 A;  4UDY X;  4FZP A;  1E9V A;  3HAI A;  4AZC A;  1HWW A;  1WDZ A;  3Q0K A;  1URU A;  2GA9 D;  2F7O A;  4PO2 A;  1R34 A;  3EJS A;  4EZU A;  4JWI A;  4EZP A;  3QNI A;  1O7D B;  2C08 A;  2JNS A;  3D51 A;  2YL6 A;  2F7P A;  1UPX A;  1QX1 A;  2Z0N A;  2Q12 A;  2LXY A;  1Y2O A;  2EFL A;  1E1D A;  2YLL A;  1R33 A;  4DYL A;  3LLL A;  4R5L A;  3D4Y A;  1TQV A;  3T49 A;  4I1Q A;  1GNT A;  3F7W A;  1TQT A;  4DCN C;  1I49 A;  3L3P A;  4FZS A;  4NQI A;  4BNE A;  2WIN M;  1TQS A;  2D1L A;  4EZS A;  1I4T A;  1QWU A;  5FIG A;  2OW6 A;  5C5B B;  3QA8 A;  3LVT A;  4F00 A;  3RPM A;  4ATM A;  3UIT A;  3QE6 A;  1ZWW A;  3DPO A;  3BVU A;  4EZN A;  4R5I A;  1TQW A;  3O3O B;  3OWG A;  4HY9 A;  4JNF A;  2PMR A;  4AZ7 A;  3C7N A;  4WPE A;  2QFF A;  3EJU A;  2YIB A;  3CKD A;  2X3V A;  4AZC B;  3OK8 A;  3D2E A;  3D2F A;  2OW7 A;  2YI8 A;  3ABH A;  4HR1 A;  1I4L A;  4FZO A;  4JLC A;  4EZX A;  1SUF A;  1SU6 A;  1QWN A;  4UDX X;  4EZZ A;  4JNE A;  4F01 A;  2YLA A;  1OAO A;  2WYH A;  4H6I A;  4AZ5 A;  3G9G A;  3T4A G;  2NCZ A;  1MJG A;  3Q84 A;  4IM3 A;  2RT6 A;  3RV1 A;  3DPP A;  3DX3 A;  2X3X A;  4AZ6 A;  2YL9 A;  3BVT A;  3PLT A;  3O3M B;  3BUP A;  4IWQ A;  1X03 A;  3D50 A;  3BVW A;  2GF4 A;  4H6H A;  2EWF A;  4JWC A;  1GNL A;  2V0O A;  3DX2 A;  3T48 A;  3DX0 A;  3VKH A;  3BUI A;  2ND1 A;  1JQK A;  2EX3 B;  1SU8 A;  3ER8 C;  4R5J A;  3BUQ A;  3L3O M;  2PY6 A;  4KIK A;  2X5C A;  1OA0 A;  4B9Q A;  3DX4 A;  3CVR A;  5TKY A;  3CZS A;  3HAJ A;  2N3K A;  3QNJ A;  3A98 A;  4R5K A;  2OO2 A;  3LMF A;  3SOG A;  2F18 A;  3ER9 B;  3VEA A;  4EZV A;  2FIC A;  2MI7 A;  2O0I 1;  3I01 A;  4AZH A;  3ACO A;  4FM3 A;  4EZQ A;  1U00 A;  4NSW A;  4WPC A;  1YWM A;  3I04 A;  4EZR A;  3FD9 A;  2OBL A;  2GAF D;  3DYT A;  5C5B A;  4JWE A;  1DKY A;  4H8S A;  3BLB A;  2Z0O A;  2OBM A;  1W9M A;  3D4Z A;  3M3W A;  3ERC C;  3O3N B;  1HXK A; 
#chains in the Genus database with same CATH homology
 1ZWW A;  2D4C A;  2Z0V A;  3HAI A;  5C5B B;  1I4D A;  2RAI A;  3G9G A;  2X3V A;  5C5B A;  1WDZ A;  3Q0K A;  1URU A;  2RAK A;  3OK8 A;  4I1Q A;  2EFK A;  2YKT A;  3ACO A;  4AKV A;  3QNI A;  3SYV A;  2C08 A;  4H8S A;  3HAJ A;  3Q84 A;  2Z0O A;  4NSW A;  3ABH A;  2Q13 A;  1I4L A;  4WPC A;  4AVM A;  2X3X A;  4ATM A;  4DCN C;  3SOG A;  2Z0N A;  2Q12 A;  1I49 A;  3PLT A;  4FZS A;  4NQI A;  1Y2O A;  2EFL A;  4BNE A;  2RAJ A;  1X03 A;  1X04 A;  2X3W A;  2ELB A;  4WPE A;  3M3W A;  2D1L A;  3CAZ A;  3QWE A;  3QE6 A;  4DYL A;  3HAH A;  3LLL A;  3DYT A;  2FIC A;  1I4T A;  2V0O A;  3I2W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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