2C0UA

Crystal structure of a covalent complex of nitroalkane oxidase trapped during substrate turnover
Total Genus 143
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
143
sequence length
430
structure length
430
Chain Sequence
VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords NITROALKANE OXIDASE
publication title Crystal Structures of Nitroalkane Oxidase: Insights Into the Reaction Mechanism from a Covalent Complex of the Flavoenzyme Trapped During Turnover.
pubmed doi rcsb
source organism Fusarium oxysporum
total genus 143
structure length 430
sequence length 430
chains with identical sequence B, C, D
ec nomenclature ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date 2005-09-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2c0uA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2c0uA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2c0uA02
4L3XA 2EBAA 2OT4A 3MPIA 3D9EA 3TTBA 2RF7A 3RKHA 2VIGA 3M9VA 3LG1A 3D1IA 2E81A 3II9A 3MMOA 2RDZA 1T9GA 4M9AA 4KCFA 3MDDA 2DDHA 2R0NA 3D6BA 1SIRA 3EOMA 4DOYA 4NXLA 4X28C 4X28A 3EONA 3S7WA 3FO3A 4OO2A 1GU6A 1EGCA 2JBSA 2WBIA 3GM6A 1BUCA 3MXLA 4L3YA 3OWAA 2IX6A 4Q4UA 1UKWA 3SXQA 5K3GA 3LGQA 5K3JA 2JBRA 4P13A 1EGDA 4ZXVA 2RFQA 3MDEA 3PFDA 4N5FA 3UU9A 1IS2A 3AFFA 4Q5BA 3D9DA 1FS9A 1SIQA 2UXWA 3MKHA 3OIBA 3MPJA 4XVXA 1R2JA 3HWCA 2YYGA 4Q17A 3FCJA 3BNJA 1FS8A 3BNHA 1FS7A 2CX9A 3P4TA 3BNFA 4U83A 5K3IA 2FONA 4L1FA 4RM7A 4L38A 2REHA 1JQIA 2VR0A 2DVLA 4KTOA 1OAHA 3X0YA 2C12A 3GQTA 2A1TA 2J7AA 3SF6A 4IRNA 4Q0TA 2PG0A 4L3ZA 3NF4A 2YYJA 4JEKA 1QDBA 3TORA 4ZYJA 3B96A 3L1TA 4HR3A 3F29A 4G5EA 3GNCA 2JBTA 3SCEA 2OR0A 5K3HA 2ZAFA 1WS9A 2YYMA 3UBRA 1UDYA 2D29A 3AFEA 4Q1OA 2C0UA 4O5MA 1U8VA 3SWOA 2YYLA 3R7KA 1RX0A 3D9GA 2JIFA 3D9FA 4WJYA 1W07A 2Z1QA 4W9UA 3BNGA 4Q5CA 4IV6A 1IVHA 2IX5A 2ZO5A 2YYKA 3X0XA 2E80A 3OWMA 2R0MA 1EGEA 2YYIA
chains in the Genus database with same CATH superfamily
5M4PA 4L3XA 2EBAA 2R03A 2OT4A 3CRLA 3TZ2A 3MPIA 4E01A 3D9EA 3TTBA 2RF7A 2XQRB 3RKHA 2VIGA 3M9VA 2EC5A 1SC5A 3LG1A 2CJ7A 2YGWA 3D1IA 5GJVE 3Q0AA 4F0XA 2E81A 3II9A 3MMOA 2RDZA 1T9GA 4M9AA 4KCFA 3MDDA 5J71A 2DDHA 2R0NA 4AKIA 1K93A 3D6BA 1SIRA 3EOMA 2R02A 4DOYA 4H85A 4NXLA 3KMLA 4KSAA 4X28C 4MPEA 3Q22A 4X28A 1RP3A 2FP2A 3EONA 1XFXA 3S7WA 3FO3A 1RJ4A 3CRKA 4HKSA 1X91A 1GU6A 4OO2A 1EGCA 2VF1A 2PNRA 2JBSA 4J1VA 2WBIA 2Q8IA 4FF1A 5B5WA 4FF2A 3GM6A 3Q24A 1BUCA 1XFYA 3MXLA 1Y8OA 1K90A 3OWAA 4L3YA 2IX6A 2R05A 4LQSB 4Q4UA 5EZ3A 1UKWA 2FP1A 1XFZA 4LQQB 4FF4A 2Q8HA 3SXQA 5K3GA 3LGQA 1JM6A 5K3JA 2JBRA 2F6LA 4P13A 4H7QA 4E02A 1EGDA 4ZXVA 2RFQA 3MDEA 3PFDA 4N5FA 3UU9A 1GKZA 1IS2A 3AFFA 2QR4A 3VADA 2ZKJA 4Q5BA 3D9DA 1FS9A 1SIQA 2UXWA 3MKHA 3OIBA 1XG2B 3MPJA 3C46A 2BU6A 4XVXA 1R2JA 2AO2A 2OEVA 2YYGA 2E0AA 3HWCA 3FCJA 3BNJA 1FS8A 1GKXA 3BNHA 4Q17A 1FS7A 3C3LA 2CX9A 4FZ4A 3P4TA 5BRKA 4P79A 2ZDYA 4H81A 4KS9A 3N0RA 3D2RA 1Y8NA 3BNFA 2EBFX 4U83A 4E00A 5K3IA 1K8TA 1GJVA 2FONA 4L1FA 4RM7A 2BU7A 2CJ6A 4L38A 2REHA 4MPCA 3VKHA 1PI1A 1JQIA 1LVCA 2VR0A 1PK0A 2DVLA 2GBBA 1SK6A 2BTZA 5M4KA 2CJ5A 4KTOA 1OAHA 3DJLA 4MPNA 3X0YA 2C12A 1Y0VA 2BU2A 3GQTA 1X90A 5GJWE 4AKGA 2A1TA 2J7AA 3SF6A 2CJ4A 4MP7A 3TZ5A 4IRNA 3Q23A 4Q0TA 2PG0A 4L3ZA 3NF4A 5B5VA 4HKRA 2BU8A 2YYJA 1XFWA 4JEKA 2CJ8A 2Q8GA 3CE2A 5J6AA 4FF3A 3VKGA 2LFWA 1QDBA 3TORA 4ZYJA 5BRMA 3B96A 3L1TA 4HR3A 2BU5A 3F29A 4G5EA 2Q8FA 4QICA 3GNCA 2JBTA 2PO4A 2XS8A 2OR0A 5K3HA 1R3BA 3SCEA 3X29A 5M4MA 2ZAFA 1WS9A 2YYMA 3UBRA 1UDYA 1S26A 4JIOA 2D29A 3AFEA 1Y8PA 2ZDXA 3TZ4A 3U33A 4Q1OA 2C0UA 4O5MA 1U8VA 3SWOA 2XS1A 2AZEA 3R7KA 2YYLA 4V25A 3C2PA 4G97A 4MP2A 5M4NA 1RX0A 3D9GA 2OEXA 5B6BA 2JIFA 3D9FA 4WJYA 1W07A 2Z1QA 4V26A 2EBHX 4W9UA 3BNGA 4KSFA 1X8ZA 4Q5CA 2OJQA 4IV6A 1RJ1A 4AKHA 1IVHA 2IX5A 2ZO5A 2YYKA 1XFUA 2YYIA 3X0XA 4DZYA 3TZ0A 2E80A 3OWMA 4JIZA 2R0MA 1XFVA 1EGEA 4AI6A 2HJNA
chains in the Genus database with same CATH topology
4L3XA 2EBAA 2OT4A 3MPIA 3D9EA 3TTBA 2RF7A 3RKHA 2VIGA 3M9VA 3LG1A 3D1IA 2E81A 3II9A 3MMOA 2RDZA 1T9GA 4M9AA 4KCFA 3MDDA 2DDHA 2R0NA 3D6BA 1SIRA 3EOMA 4DOYA 4NXLA 4X28C 4X28A 3EONA 3S7WA 3FO3A 4OO2A 1GU6A 1EGCA 2JBSA 2WBIA 3GM6A 1BUCA 3MXLA 4L3YA 3OWAA 2IX6A 4Q4UA 1UKWA 3SXQA 5K3GA 3LGQA 5K3JA 2JBRA 4P13A 1EGDA 4ZXVA 2RFQA 3MDEA 3PFDA 4N5FA 3UU9A 1IS2A 3AFFA 4Q5BA 3D9DA 1FS9A 1SIQA 2UXWA 3MKHA 3OIBA 3MPJA 4XVXA 1R2JA 3HWCA 2YYGA 4Q17A 3FCJA 3BNJA 1FS8A 3BNHA 1FS7A 2CX9A 3P4TA 3BNFA 4U83A 5K3IA 2FONA 4L1FA 4RM7A 4L38A 2REHA 1JQIA 2VR0A 2DVLA 4KTOA 1OAHA 3X0YA 2C12A 3GQTA 2A1TA 2J7AA 3SF6A 4IRNA 4Q0TA 2PG0A 4L3ZA 3NF4A 2YYJA 4JEKA 1QDBA 3TORA 4ZYJA 3B96A 3L1TA 4HR3A 3F29A 4G5EA 3GNCA 2JBTA 3SCEA 2OR0A 5K3HA 2ZAFA 1WS9A 2YYMA 3UBRA 1UDYA 2D29A 3AFEA 4Q1OA 2C0UA 4O5MA 1U8VA 3SWOA 2YYLA 3R7KA 1RX0A 3D9GA 2JIFA 3D9FA 4WJYA 1W07A 2Z1QA 4W9UA 3BNGA 4Q5CA 4IV6A 1IVHA 2IX5A 2ZO5A 2YYKA 3X0XA 2E80A 3OWMA 2R0MA 1EGEA 2YYIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4L3X A;  2EBA A;  2OT4 A;  3MPI A;  3D9E A;  3TTB A;  2RF7 A;  3RKH A;  2VIG A;  3M9V A;  3LG1 A;  3D1I A;  2E81 A;  3II9 A;  3MMO A;  2RDZ A;  1T9G A;  4M9A A;  4KCF A;  3MDD A;  2DDH A;  2R0N A;  3D6B A;  1SIR A;  3EOM A;  4DOY A;  4NXL A;  4X28 C;  4X28 A;  3EON A;  3S7W A;  3FO3 A;  4OO2 A;  1GU6 A;  1EGC A;  2JBS A;  2WBI A;  3GM6 A;  1BUC A;  3MXL A;  4L3Y A;  3OWA A;  2IX6 A;  4Q4U A;  1UKW A;  3SXQ A;  5K3G A;  3LGQ A;  5K3J A;  2JBR A;  4P13 A;  1EGD A;  4ZXV A;  2RFQ A;  3MDE A;  3PFD A;  4N5F A;  3UU9 A;  1IS2 A;  3AFF A;  4Q5B A;  3D9D A;  1FS9 A;  1SIQ A;  2UXW A;  3MKH A;  3OIB A;  3MPJ A;  4XVX A;  1R2J A;  3HWC A;  2YYG A;  4Q17 A;  3FCJ A;  3BNJ A;  1FS8 A;  3BNH A;  1FS7 A;  2CX9 A;  3P4T A;  3BNF A;  4U83 A;  5K3I A;  2FON A;  4L1F A;  4RM7 A;  4L38 A;  2REH A;  1JQI A;  2VR0 A;  2DVL A;  4KTO A;  1OAH A;  3X0Y A;  2C12 A;  3GQT A;  2A1T A;  2J7A A;  3SF6 A;  4IRN A;  4Q0T A;  2PG0 A;  4L3Z A;  3NF4 A;  2YYJ A;  4JEK A;  1QDB A;  3TOR A;  4ZYJ A;  3B96 A;  3L1T A;  4HR3 A;  3F29 A;  4G5E A;  3GNC A;  2JBT A;  3SCE A;  2OR0 A;  5K3H A;  2ZAF A;  1WS9 A;  2YYM A;  3UBR A;  1UDY A;  2D29 A;  3AFE A;  4Q1O A;  2C0U A;  4O5M A;  1U8V A;  3SWO A;  2YYL A;  3R7K A;  1RX0 A;  3D9G A;  2JIF A;  3D9F A;  4WJY A;  1W07 A;  2Z1Q A;  4W9U A;  3BNG A;  4Q5C A;  4IV6 A;  1IVH A;  2IX5 A;  2ZO5 A;  2YYK A;  3X0X A;  2E80 A;  3OWM A;  2R0M A;  1EGE A;  2YYI A; 
#chains in the Genus database with same CATH topology
 5M4P A;  4L3X A;  2EBA A;  2R03 A;  2OT4 A;  3CRL A;  3TZ2 A;  3MPI A;  4E01 A;  3D9E A;  3TTB A;  2RF7 A;  2XQR B;  3RKH A;  2VIG A;  3M9V A;  2EC5 A;  1SC5 A;  3LG1 A;  2CJ7 A;  2YGW A;  3D1I A;  5GJV E;  3Q0A A;  4F0X A;  2E81 A;  3II9 A;  3MMO A;  2RDZ A;  1T9G A;  4M9A A;  4KCF A;  3MDD A;  5J71 A;  2DDH A;  2R0N A;  4AKI A;  1K93 A;  3D6B A;  1SIR A;  3EOM A;  2R02 A;  4DOY A;  4H85 A;  4NXL A;  3KML A;  4KSA A;  4X28 C;  4MPE A;  3Q22 A;  4X28 A;  1RP3 A;  2FP2 A;  3EON A;  1XFX A;  3S7W A;  3FO3 A;  1RJ4 A;  3CRK A;  4HKS A;  1X91 A;  1GU6 A;  4OO2 A;  1EGC A;  2VF1 A;  2PNR A;  2JBS A;  4J1V A;  2WBI A;  2Q8I A;  4FF1 A;  5B5W A;  4FF2 A;  3GM6 A;  3Q24 A;  1BUC A;  1XFY A;  3MXL A;  1Y8O A;  1K90 A;  3OWA A;  4L3Y A;  2IX6 A;  2R05 A;  4LQS B;  4Q4U A;  5EZ3 A;  1UKW A;  2FP1 A;  1XFZ A;  4LQQ B;  4FF4 A;  2Q8H A;  3SXQ A;  5K3G A;  3LGQ A;  1JM6 A;  5K3J A;  2JBR A;  2F6L A;  4P13 A;  4H7Q A;  4E02 A;  1EGD A;  4ZXV A;  2RFQ A;  3MDE A;  3PFD A;  4N5F A;  3UU9 A;  1GKZ A;  1IS2 A;  3AFF A;  2QR4 A;  3VAD A;  2ZKJ A;  4Q5B A;  3D9D A;  1FS9 A;  1SIQ A;  2UXW A;  3MKH A;  3OIB A;  1XG2 B;  3MPJ A;  3C46 A;  2BU6 A;  4XVX A;  1R2J A;  2AO2 A;  2OEV A;  2YYG A;  2E0A A;  3HWC A;  3FCJ A;  3BNJ A;  1FS8 A;  1GKX A;  3BNH A;  4Q17 A;  1FS7 A;  3C3L A;  2CX9 A;  4FZ4 A;  3P4T A;  5BRK A;  4P79 A;  2ZDY A;  4H81 A;  4KS9 A;  3N0R A;  3D2R A;  1Y8N A;  3BNF A;  2EBF X;  4U83 A;  4E00 A;  5K3I A;  1K8T A;  1GJV A;  2FON A;  4L1F A;  4RM7 A;  2BU7 A;  2CJ6 A;  4L38 A;  2REH A;  4MPC A;  3VKH A;  1PI1 A;  1JQI A;  1LVC A;  2VR0 A;  1PK0 A;  2DVL A;  2GBB A;  1SK6 A;  2BTZ A;  5M4K A;  2CJ5 A;  4KTO A;  1OAH A;  3DJL A;  4MPN A;  3X0Y A;  2C12 A;  1Y0V A;  2BU2 A;  3GQT A;  1X90 A;  5GJW E;  4AKG A;  2A1T A;  2J7A A;  3SF6 A;  2CJ4 A;  4MP7 A;  3TZ5 A;  4IRN A;  3Q23 A;  4Q0T A;  2PG0 A;  4L3Z A;  3NF4 A;  5B5V A;  4HKR A;  2BU8 A;  2YYJ A;  1XFW A;  4JEK A;  2CJ8 A;  2Q8G A;  3CE2 A;  5J6A A;  4FF3 A;  3VKG A;  2LFW A;  1QDB A;  3TOR A;  4ZYJ A;  5BRM A;  3B96 A;  3L1T A;  4HR3 A;  2BU5 A;  3F29 A;  4G5E A;  2Q8F A;  4QIC A;  3GNC A;  2JBT A;  2PO4 A;  2XS8 A;  2OR0 A;  5K3H A;  1R3B A;  3SCE A;  3X29 A;  5M4M A;  2ZAF A;  1WS9 A;  2YYM A;  3UBR A;  1UDY A;  1S26 A;  4JIO A;  2D29 A;  3AFE A;  1Y8P A;  2ZDX A;  3TZ4 A;  3U33 A;  4Q1O A;  2C0U A;  4O5M A;  1U8V A;  3SWO A;  2XS1 A;  2AZE A;  3R7K A;  2YYL A;  4V25 A;  3C2P A;  4G97 A;  4MP2 A;  5M4N A;  1RX0 A;  3D9G A;  2OEX A;  5B6B A;  2JIF A;  3D9F A;  4WJY A;  1W07 A;  2Z1Q A;  4V26 A;  2EBH X;  4W9U A;  3BNG A;  4KSF A;  1X8Z A;  4Q5C A;  2OJQ A;  4IV6 A;  1RJ1 A;  4AKH A;  1IVH A;  2IX5 A;  2ZO5 A;  2YYK A;  1XFU A;  2YYI A;  3X0X A;  4DZY A;  3TZ0 A;  2E80 A;  3OWM A;  4JIZ A;  2R0M A;  1XFV A;  1EGE A;  4AI6 A;  2HJN A; 
#chains in the Genus database with same CATH homology
 4L3X A;  2EBA A;  2OT4 A;  3MPI A;  3D9E A;  3TTB A;  2RF7 A;  3RKH A;  2VIG A;  3M9V A;  3LG1 A;  3D1I A;  2E81 A;  3II9 A;  3MMO A;  2RDZ A;  1T9G A;  4M9A A;  4KCF A;  3MDD A;  2DDH A;  2R0N A;  3D6B A;  1SIR A;  3EOM A;  4DOY A;  4NXL A;  4X28 C;  4X28 A;  3EON A;  3S7W A;  3FO3 A;  4OO2 A;  1GU6 A;  1EGC A;  2JBS A;  2WBI A;  3GM6 A;  1BUC A;  3MXL A;  4L3Y A;  3OWA A;  2IX6 A;  4Q4U A;  1UKW A;  3SXQ A;  5K3G A;  3LGQ A;  5K3J A;  2JBR A;  4P13 A;  1EGD A;  4ZXV A;  2RFQ A;  3MDE A;  3PFD A;  4N5F A;  3UU9 A;  1IS2 A;  3AFF A;  4Q5B A;  3D9D A;  1FS9 A;  1SIQ A;  2UXW A;  3MKH A;  3OIB A;  3MPJ A;  4XVX A;  1R2J A;  3HWC A;  2YYG A;  4Q17 A;  3FCJ A;  3BNJ A;  1FS8 A;  3BNH A;  1FS7 A;  2CX9 A;  3P4T A;  3BNF A;  4U83 A;  5K3I A;  2FON A;  4L1F A;  4RM7 A;  4L38 A;  2REH A;  1JQI A;  2VR0 A;  2DVL A;  4KTO A;  1OAH A;  3X0Y A;  2C12 A;  3GQT A;  2A1T A;  2J7A A;  3SF6 A;  4IRN A;  4Q0T A;  2PG0 A;  4L3Z A;  3NF4 A;  2YYJ A;  4JEK A;  1QDB A;  3TOR A;  4ZYJ A;  3B96 A;  3L1T A;  4HR3 A;  3F29 A;  4G5E A;  3GNC A;  2JBT A;  3SCE A;  2OR0 A;  5K3H A;  2ZAF A;  1WS9 A;  2YYM A;  3UBR A;  1UDY A;  2D29 A;  3AFE A;  4Q1O A;  2C0U A;  4O5M A;  1U8V A;  3SWO A;  2YYL A;  3R7K A;  1RX0 A;  3D9G A;  2JIF A;  3D9F A;  4WJY A;  1W07 A;  2Z1Q A;  4W9U A;  3BNG A;  4Q5C A;  4IV6 A;  1IVH A;  2IX5 A;  2ZO5 A;  2YYK A;  3X0X A;  2E80 A;  3OWM A;  2R0M A;  1EGE A;  2YYI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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