2CBFA

The x-ray structure of a cobalamin biosynthetic enzyme, cobalt precorrin-4 methyltransferase, cbif, from bacillus megaterium, with the his-tag cleaved off
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
234
structure length
234
Chain Sequence
GSHMKLYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVLKTAGMHLEEMVGTMLDRMREGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAAAAAEAELTIPDLTQTVILTRAEGRTPVPEFEKLTDLAKHKCTIALFLSSTLTKKVMKEFINAGWSEDTPVVVVYKATWPDEKIVRTTVKDLDDAMRTNGIRKQAMILAGWALDP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Methyltransferase
molecule keywords COBALT-PRECORRIN-4 TRANSMETHYLASE
publication title The X-ray structure of a cobalamin biosynthetic enzyme, cobalt-precorrin-4 methyltransferase.
pubmed doi rcsb
source organism Bacillus megaterium
total genus 62
structure length 234
sequence length 234
ec nomenclature ec 2.1.1.271: Cobalt-precorrin-4 methyltransferase.
pdb deposition date 1998-05-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2cbfA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2cbfA01
2E4RA 2OWVA 2ZVBA 3FQ6A 2P6DA 2E8HA 2EHCA 2EK4A 2EL1A 1S4DA 2DV3A 2EK7A 2EH4A 2DV5A 3NDCA 2EGSA 2EKAA 2BB3A 2E0NA 1VA0A 2EEQA 2ED3A 2EGBA 3NEIA 3NUTA 2DSGA 1VE2A 2DXWA 2E0KA 2DEKA 5HW4A 2EL2A 4E16A 2P6LA 2HUQA 2PB6A 2EK2A 2P5FA 1WNGA 2YBOA 2DSIA 2DSHA 2HUTA 2HUVA 3FFYA 2EK3A 2EL3A 3KWPA 2P5CA 2ZVCA 2E16A 2Z6RA 2NPNA 2CBFA 2E8QA 1PJTA 2EL0A 2OWFA 2ELDA 2E4NA 2EHLA 2EH2A 1V9AA 2P6IA 2E8RA 2OWUA 2DXVA 2EJJA 3I4TA 2DXXA 2HR8A 2EJZA 1VCEA 2E07A 2PCAA 2P2XA 2EJKA 2PB5A 2DV7A 3ND1A 1PJSA 2QBUA 2PCHA 1CBFA 2EMRA 2ENIA 2PB4A 2OWKA 2E15A 2EH5A 2HUXA 2EMUA 2P9DA 2PCIA 2PCGA 2E08A 2PCKA 2E7RA 1WDEA 2PCMA 2OWGA 1VHVA 2P6KA 2E17A 1PJQA 2ED5A 2YBQA 3HH1A 1WYZA 2EN5A 2EGLA 2DV4A 2E8SA 2ELEA
chains in the Genus database with same CATH superfamily
2E4RA 2OWVA 2ZVBA 3UWMA 3FQ6A 2P6DA 2E8HA 2EHCA 3T0FA 2EK4A 3KEMA 3LMMA 2EL1A 1S4DA 2DV3A 2EK7A 2EH4A 2DV5A 3NDCA 4EB3A 2EGSA 2EKAA 2BB3A 2E0NA 3URKA 1VA0A 2EEQA 3UV7A 2ED3A 3UTCA 3TIXB 2EGBA 3NEIA 3NUTA 2DSGA 1VE2A 3ZGLA 3SZUA 2DXWA 2E0KA 2DEKA 5HW4A 2EL2A 4E16A 2P6LA 4H4DA 2HUQA 2PB6A 2EK2A 2P5FA 1WNGA 2YBOA 2DSIA 2DSHA 2HUTA 2HUVA 3ZGNA 3FFYA 4MUYA 2EK3A 2EL3A 3KWPA 2P5CA 2ZVCA 2E16A 2Z6RA 2NPNA 2CBFA 2E8QA 1PJTA 2EL0A 2OWFA 2ELDA 2E4NA 2EHLA 2EH2A 1V9AA 2P6IA 4MV0A 2E8RA 2OWUA 2DXVA 2EJJA 3I4TA 2DXXA 4N7BA 2HR8A 3KE9A 2EJZA 3UV6A 1VCEA 3F7TA 3KE8A 2KYYA 3UV3A 4MUXA 4MV5A 3DNFA 2E07A 2PCAA 2P2XA 2EJKA 2PB5A 2DV7A 3ND1A 3KEFA 3SZLA 1PJSA 2QBUA 2PCHA 1CBFA 4H4EA 3T0GA 2EMRA 2ENIA 2PB4A 2OWKA 2E15A 2EH5A 2HUXA 2EMUA 2P9DA 2PCIA 2PCGA 2E08A 2PCKA 3UTDA 2E7RA 1WDEA 2PCMA 2OWGA 4H4CA 1VHVA 2P6KA 2E17A 1PJQA 2ED5A 2YBQA 3HH1A 3KELA 1WYZA 2EN5A 2EGLA 2DV4A 2E8SA 3SZOA 2ELEA
chains in the Genus database with same CATH topology
2E4RA 2OWVA 2ZVBA 3UWMA 3FQ6A 2P6DA 2E8HA 2EHCA 3T0FA 2EK4A 3KEMA 3LMMA 2EL1A 1S4DA 2DV3A 2EK7A 2EH4A 2DV5A 3NDCA 4EB3A 2EGSA 2EKAA 2BB3A 2E0NA 3URKA 1VA0A 2EEQA 3UV7A 2ED3A 3UTCA 3TIXB 2EGBA 3NEIA 3NUTA 2DSGA 1VE2A 3ZGLA 3SZUA 2DXWA 2E0KA 2DEKA 5HW4A 2EL2A 4E16A 2P6LA 4H4DA 2HUQA 2PB6A 2EK2A 2P5FA 1WNGA 2YBOA 2DSIA 2DSHA 2HUTA 2HUVA 3ZGNA 3FFYA 4MUYA 2EK3A 2EL3A 3KWPA 2P5CA 2ZVCA 2E16A 2Z6RA 2NPNA 2CBFA 2E8QA 1PJTA 2EL0A 2OWFA 2ELDA 2E4NA 2EHLA 2EH2A 1V9AA 2P6IA 4MV0A 2E8RA 2OWUA 2DXVA 2EJJA 3I4TA 2DXXA 4N7BA 2HR8A 3KE9A 2EJZA 3UV6A 1VCEA 3F7TA 3KE8A 2KYYA 3UV3A 4MUXA 4MV5A 3DNFA 2E07A 2PCAA 2P2XA 2EJKA 2PB5A 2DV7A 3ND1A 3KEFA 3SZLA 1PJSA 2QBUA 2PCHA 1CBFA 4H4EA 3T0GA 2EMRA 2ENIA 2PB4A 2OWKA 2E15A 2EH5A 2HUXA 2EMUA 2P9DA 2PCIA 2PCGA 2E08A 2PCKA 3UTDA 2E7RA 1WDEA 2PCMA 2OWGA 4H4CA 1VHVA 2P6KA 2E17A 1PJQA 2ED5A 2YBQA 3HH1A 3KELA 1WYZA 2EN5A 2EGLA 2DV4A 2E8SA 3SZOA 2ELEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E4R A;  2OWV A;  2ZVB A;  3FQ6 A;  2P6D A;  2E8H A;  2EHC A;  2EK4 A;  2EL1 A;  1S4D A;  2DV3 A;  2EK7 A;  2EH4 A;  2DV5 A;  3NDC A;  2EGS A;  2EKA A;  2BB3 A;  2E0N A;  1VA0 A;  2EEQ A;  2ED3 A;  2EGB A;  3NEI A;  3NUT A;  2DSG A;  1VE2 A;  2DXW A;  2E0K A;  2DEK A;  5HW4 A;  2EL2 A;  4E16 A;  2P6L A;  2HUQ A;  2PB6 A;  2EK2 A;  2P5F A;  1WNG A;  2YBO A;  2DSI A;  2DSH A;  2HUT A;  2HUV A;  3FFY A;  2EK3 A;  2EL3 A;  3KWP A;  2P5C A;  2ZVC A;  2E16 A;  2Z6R A;  2NPN A;  2CBF A;  2E8Q A;  1PJT A;  2EL0 A;  2OWF A;  2ELD A;  2E4N A;  2EHL A;  2EH2 A;  1V9A A;  2P6I A;  2E8R A;  2OWU A;  2DXV A;  2EJJ A;  3I4T A;  2DXX A;  2HR8 A;  2EJZ A;  1VCE A;  2E07 A;  2PCA A;  2P2X A;  2EJK A;  2PB5 A;  2DV7 A;  3ND1 A;  1PJS A;  2QBU A;  2PCH A;  1CBF A;  2EMR A;  2ENI A;  2PB4 A;  2OWK A;  2E15 A;  2EH5 A;  2HUX A;  2EMU A;  2P9D A;  2PCI A;  2PCG A;  2E08 A;  2PCK A;  2E7R A;  1WDE A;  2PCM A;  2OWG A;  1VHV A;  2P6K A;  2E17 A;  1PJQ A;  2ED5 A;  2YBQ A;  3HH1 A;  1WYZ A;  2EN5 A;  2EGL A;  2DV4 A;  2E8S A;  2ELE A; 
#chains in the Genus database with same CATH topology
 2E4R A;  2OWV A;  2ZVB A;  3UWM A;  3FQ6 A;  2P6D A;  2E8H A;  2EHC A;  3T0F A;  2EK4 A;  3KEM A;  3LMM A;  2EL1 A;  1S4D A;  2DV3 A;  2EK7 A;  2EH4 A;  2DV5 A;  3NDC A;  4EB3 A;  2EGS A;  2EKA A;  2BB3 A;  2E0N A;  3URK A;  1VA0 A;  2EEQ A;  3UV7 A;  2ED3 A;  3UTC A;  3TIX B;  2EGB A;  3NEI A;  3NUT A;  2DSG A;  1VE2 A;  3ZGL A;  3SZU A;  2DXW A;  2E0K A;  2DEK A;  5HW4 A;  2EL2 A;  4E16 A;  2P6L A;  4H4D A;  2HUQ A;  2PB6 A;  2EK2 A;  2P5F A;  1WNG A;  2YBO A;  2DSI A;  2DSH A;  2HUT A;  2HUV A;  3ZGN A;  3FFY A;  4MUY A;  2EK3 A;  2EL3 A;  3KWP A;  2P5C A;  2ZVC A;  2E16 A;  2Z6R A;  2NPN A;  2CBF A;  2E8Q A;  1PJT A;  2EL0 A;  2OWF A;  2ELD A;  2E4N A;  2EHL A;  2EH2 A;  1V9A A;  2P6I A;  4MV0 A;  2E8R A;  2OWU A;  2DXV A;  2EJJ A;  3I4T A;  2DXX A;  4N7B A;  2HR8 A;  3KE9 A;  2EJZ A;  3UV6 A;  1VCE A;  3F7T A;  3KE8 A;  2KYY A;  3UV3 A;  4MUX A;  4MV5 A;  3DNF A;  2E07 A;  2PCA A;  2P2X A;  2EJK A;  2PB5 A;  2DV7 A;  3ND1 A;  3KEF A;  3SZL A;  1PJS A;  2QBU A;  2PCH A;  1CBF A;  4H4E A;  3T0G A;  2EMR A;  2ENI A;  2PB4 A;  2OWK A;  2E15 A;  2EH5 A;  2HUX A;  2EMU A;  2P9D A;  2PCI A;  2PCG A;  2E08 A;  2PCK A;  3UTD A;  2E7R A;  1WDE A;  2PCM A;  2OWG A;  4H4C A;  1VHV A;  2P6K A;  2E17 A;  1PJQ A;  2ED5 A;  2YBQ A;  3HH1 A;  3KEL A;  1WYZ A;  2EN5 A;  2EGL A;  2DV4 A;  2E8S A;  3SZO A;  2ELE A; 
#chains in the Genus database with same CATH homology
 2E4R A;  2OWV A;  2ZVB A;  3UWM A;  3FQ6 A;  2P6D A;  2E8H A;  2EHC A;  3T0F A;  2EK4 A;  3KEM A;  3LMM A;  2EL1 A;  1S4D A;  2DV3 A;  2EK7 A;  2EH4 A;  2DV5 A;  3NDC A;  4EB3 A;  2EGS A;  2EKA A;  2BB3 A;  2E0N A;  3URK A;  1VA0 A;  2EEQ A;  3UV7 A;  2ED3 A;  3UTC A;  3TIX B;  2EGB A;  3NEI A;  3NUT A;  2DSG A;  1VE2 A;  3ZGL A;  3SZU A;  2DXW A;  2E0K A;  2DEK A;  5HW4 A;  2EL2 A;  4E16 A;  2P6L A;  4H4D A;  2HUQ A;  2PB6 A;  2EK2 A;  2P5F A;  1WNG A;  2YBO A;  2DSI A;  2DSH A;  2HUT A;  2HUV A;  3ZGN A;  3FFY A;  4MUY A;  2EK3 A;  2EL3 A;  3KWP A;  2P5C A;  2ZVC A;  2E16 A;  2Z6R A;  2NPN A;  2CBF A;  2E8Q A;  1PJT A;  2EL0 A;  2OWF A;  2ELD A;  2E4N A;  2EHL A;  2EH2 A;  1V9A A;  2P6I A;  4MV0 A;  2E8R A;  2OWU A;  2DXV A;  2EJJ A;  3I4T A;  2DXX A;  4N7B A;  2HR8 A;  3KE9 A;  2EJZ A;  3UV6 A;  1VCE A;  3F7T A;  3KE8 A;  2KYY A;  3UV3 A;  4MUX A;  4MV5 A;  3DNF A;  2E07 A;  2PCA A;  2P2X A;  2EJK A;  2PB5 A;  2DV7 A;  3ND1 A;  3KEF A;  3SZL A;  1PJS A;  2QBU A;  2PCH A;  1CBF A;  4H4E A;  3T0G A;  2EMR A;  2ENI A;  2PB4 A;  2OWK A;  2E15 A;  2EH5 A;  2HUX A;  2EMU A;  2P9D A;  2PCI A;  2PCG A;  2E08 A;  2PCK A;  3UTD A;  2E7R A;  1WDE A;  2PCM A;  2OWG A;  4H4C A;  1VHV A;  2P6K A;  2E17 A;  1PJQ A;  2ED5 A;  2YBQ A;  3HH1 A;  3KEL A;  1WYZ A;  2EN5 A;  2EGL A;  2DV4 A;  2E8S A;  3SZO A;  2ELE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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