2CO9A

Solution structure of the hmg_box domain of thymus high mobility group box protein tox from mouse
Total Genus 22
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
102
structure length
102
Chain Sequence
GSSGSSGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASLVSKSYTDSGPSSG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transcription
molecule keywords thymus high mobility group box protein TOX
publication title Solution structure of the HMG_box domain of thymus high mobility group box protein TOX from mouse
rcsb
source organism Mus musculus
total genus 22
structure length 102
sequence length 102
ec nomenclature
pdb deposition date 2005-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00505 HMG_box HMG (high mobility group) box
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.30.10 Mainly Alpha Orthogonal Bundle DNA Binding (I), subunit A High mobility group box domain 2co9A00
1GT0D 1J5NA 1L8YA 2YRQA 4S2QD 2YQIA 2YUKA 1CKTA 1J3DA 1K99A 1J46A 1L8ZA 1J3XA 3TMMA 1WZ6A 4Y60C 2LE4A 1V64A 3U2BC 2GZKA 2LHJA 1HSNA 2LEFA 1WGFA 1O4XB 2E6OA 4A3NA 1QRVA 1HRYA 3FGHA 2CO9A 1WXLA 4EUWA 1CG7A 1HMEA 2CS1A 1I11A 1LWMA 1V63A 2D7LA 2EQZA 4QR9A 2CRJA 1HMFA 3F27D 2HDZA 2RTUA 2LY4A 2YULA 4NODA 4NNUA 2CTOA 1HSMA 3TQ6A 1NHNA 3NM9A 1J47A 1HRZA 1HMAA 1J3CA 1AABA 1E7JA 1NHMA
chains in the Genus database with same CATH superfamily
3ANYB 1GT0D 1J5NA 1L8YA 5H8WA 2YRQA 4S2QD 2YQIA 2YUKA 1CKTA 1J3DA 1K99A 1J46A 1L8ZA 1J3XA 3TMMA 1WZ6A 3ABOB 4Y60C 2LE4A 1V64A 3U2BC 2GZKA 2LHJA 1HSNA 2LEFA 1WGFA 1O4XB 2E6OA 4A3NA 1QRVA 3AO0B 1HRYA 3FGHA 2CO9A 3ABSB 1WXLA 4EUWA 3ABRB 1CG7A 1HMEA 2CS1A 1I11A 1LWMA 1V63A 2D7LA 2EQZA 4QR9A 2VSFA 2CRJA 1HMFA 3F27D 2HDZA 2RTUA 2LY4A 2YULA 4NODA 4NNUA 2CTOA 1HSMA 4A15A 3TQ6A 4KQEA 1NHNA 3NM9A 1J47A 1HRZA 1HMAA 1J3CA 1AABA 1E7JA 1NHMA
chains in the Genus database with same CATH topology
1GT0D 1J5NA 1L8YA 2YRQA 4S2QD 2YQIA 2YUKA 1CKTA 1J3DA 1K99A 1J46A 1L8ZA 1J3XA 3TMMA 1WZ6A 4Y60C 2LE4A 1V64A 3U2BC 2GZKA 2LHJA 1HSNA 2LEFA 1WGFA 1O4XB 2E6OA 4A3NA 1QRVA 1HRYA 3FGHA 2CO9A 1WXLA 4EUWA 1CG7A 1HMEA 2CS1A 1I11A 1LWMA 1V63A 2D7LA 2EQZA 4QR9A 2CRJA 1HMFA 3F27D 2HDZA 2RTUA 2LY4A 2YULA 4NODA 4NNUA 2CTOA 1HSMA 3TQ6A 1NHNA 3NM9A 1J47A 1HRZA 1HMAA 1J3CA 1AABA 1E7JA 1NHMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GT0 D;  1J5N A;  1L8Y A;  2YRQ A;  4S2Q D;  2YQI A;  2YUK A;  1CKT A;  1J3D A;  1K99 A;  1J46 A;  1L8Z A;  1J3X A;  3TMM A;  1WZ6 A;  4Y60 C;  2LE4 A;  1V64 A;  3U2B C;  2GZK A;  2LHJ A;  1HSN A;  2LEF A;  1WGF A;  1O4X B;  2E6O A;  4A3N A;  1QRV A;  1HRY A;  3FGH A;  2CO9 A;  1WXL A;  4EUW A;  1CG7 A;  1HME A;  2CS1 A;  1I11 A;  1LWM A;  1V63 A;  2D7L A;  2EQZ A;  4QR9 A;  2CRJ A;  1HMF A;  3F27 D;  2HDZ A;  2RTU A;  2LY4 A;  2YUL A;  4NOD A;  4NNU A;  2CTO A;  1HSM A;  3TQ6 A;  1NHN A;  3NM9 A;  1J47 A;  1HRZ A;  1HMA A;  1J3C A;  1AAB A;  1E7J A;  1NHM A; 
#chains in the Genus database with same CATH topology
 3ANY B;  1GT0 D;  1J5N A;  1L8Y A;  5H8W A;  2YRQ A;  4S2Q D;  2YQI A;  2YUK A;  1CKT A;  1J3D A;  1K99 A;  1J46 A;  1L8Z A;  1J3X A;  3TMM A;  1WZ6 A;  3ABO B;  4Y60 C;  2LE4 A;  1V64 A;  3U2B C;  2GZK A;  2LHJ A;  1HSN A;  2LEF A;  1WGF A;  1O4X B;  2E6O A;  4A3N A;  1QRV A;  3AO0 B;  1HRY A;  3FGH A;  2CO9 A;  3ABS B;  1WXL A;  4EUW A;  3ABR B;  1CG7 A;  1HME A;  2CS1 A;  1I11 A;  1LWM A;  1V63 A;  2D7L A;  2EQZ A;  4QR9 A;  2VSF A;  2CRJ A;  1HMF A;  3F27 D;  2HDZ A;  2RTU A;  2LY4 A;  2YUL A;  4NOD A;  4NNU A;  2CTO A;  1HSM A;  4A15 A;  3TQ6 A;  4KQE A;  1NHN A;  3NM9 A;  1J47 A;  1HRZ A;  1HMA A;  1J3C A;  1AAB A;  1E7J A;  1NHM A; 
#chains in the Genus database with same CATH homology
 1GT0 D;  1J5N A;  1L8Y A;  2YRQ A;  4S2Q D;  2YQI A;  2YUK A;  1CKT A;  1J3D A;  1K99 A;  1J46 A;  1L8Z A;  1J3X A;  3TMM A;  1WZ6 A;  4Y60 C;  2LE4 A;  1V64 A;  3U2B C;  2GZK A;  2LHJ A;  1HSN A;  2LEF A;  1WGF A;  1O4X B;  2E6O A;  4A3N A;  1QRV A;  1HRY A;  3FGH A;  2CO9 A;  1WXL A;  4EUW A;  1CG7 A;  1HME A;  2CS1 A;  1I11 A;  1LWM A;  1V63 A;  2D7L A;  2EQZ A;  4QR9 A;  2CRJ A;  1HMF A;  3F27 D;  2HDZ A;  2RTU A;  2LY4 A;  2YUL A;  4NOD A;  4NNU A;  2CTO A;  1HSM A;  3TQ6 A;  1NHN A;  3NM9 A;  1J47 A;  1HRZ A;  1HMA A;  1J3C A;  1AAB A;  1E7J A;  1NHM A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...