2CRRA

Solution structure of arfgap domain from human smap1
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
141
structure length
141
Chain Sequence
GSSGSSGKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNAIAISGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
molecule keywords Stromal membrane-associated protein SMAP1B
publication title Solution structure of ArfGap domain from human SMAP1
rcsb
source organism Homo sapiens
total genus 23
structure length 141
sequence length 141
ec nomenclature
pdb deposition date 2005-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01412 ArfGap Putative GTPase activating protein for Arf
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.160 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2crrA01
3DWDA 4F1PA 3FM8C 2B0OE 1DCQA 3LVQE 2CRRA 2P57A 3FEHA 3LVRE 3O47A 2OWAA 3MDBC 3SUBA 2CRWA 2IQJA 3T9KA 3JUEA 3LJUX
chains in the Genus database with same CATH superfamily
2MA6A 1HYIA 4WZ0A 3N9QA 3ZTGA 5KH9A 2H0DA 2YREA 3VK6A 5I3LA 2YU4A 3FANA 2LV9A 2KWOA 1RMDA 2OWAA 3ZNIA 2CONA 2CRWA 2EA6A 3PURA 2CKLB 3C5KA 2KGIA 1ZBDB 2EGMA 4F52B 2YQMA 3N9NA 2XOZA 4L7XA 4QQ4A 4Q6FA 4CA1A 3L1ZB 3ZVYA 3ZVZB 4YBSA 3FEHA 4AYCB 5H1VA 2YYRA 3SUBA 1X4IA 4MSXA 5TDWA 2QICA 2YSJA 1MM3A 5AIUA 1HYJA 3KNVA 2XOYA 4IC3A 1DVPA 1VFYA 1Z6UA 2MUMA 4GB0A 4YAXA 3M63A 2LGKA 2FUIA 5D1KB 2YHOA 3PLWA 3EB6A 1U6GB 3FL2A 3RTRB 2G45A 2Y43A 3N9OA 2LDRA 5J3XA 2E6SA 2MIQA 2VNFA 4GNGA 2KWKA 2RSDA 3SOXA 4X3GA 4P5OB 3LDYA 5H1TA 1WILA 5KH3A 5KH7A 1LDKC 5LKZA 1MM2A 4A4CA 4BBQA 3O70A 1WEPA 4QF3A 2KKYA 4R2YA 1LDJB 3LJUX 2YURA 3H7HA 4UI9B 2VPEA 5TDRA 2JMIA 4YATA 5K3QA 2B0OE 2QIZA 5FEYA 4WZ3B 2YSMA 3ASLA 2KYUA 2HYED 5SVYA 2BAYA 5G0FA 3O33A 4V3KC 2VJEB 4B7YC 2JRJA 2DJAA 2YQLA 2FUUA 2KKXA 2UZGA 2XEUA 2L7PA 2KWJA 3RPGC 4PTBA 4A0CD 2FFWA 3HCSA 4LLBA 2DX8A 2IDAA 1XWHA 5DKAA 4ZUXU 2CSVA 1VYXA 2MD8C 4S3OC 5H9MA 4UP5A 5G04B 3IHPA 3NG2A 4F1PA 5G05B 1VD4A 1WE9A 2LGLA 3DDTA 3V43A 2LN0A 3ZPVE 3E2DA 2M13A 3FAOA 2E6RA 2I50A 3DPLR 2VJFA 1WEWA 4YBTA 3N9LA 2KIZA 4I7CA 1FBVA 1Z60A 5FERA 3T9KA 3LQIA 2QJ0A 4XI1A 3I2DA 2Y1MA 2MD7B 3SOUA 5D1MB 5AITA 2CKLA 1WEQA 4LADB 4BHWA 4I7BA 2VPGA 2FSAA 1N87A 3EB5A 1WEVA 1K2FA 3KQIA 4AYCA 1JM7A 3U5PA 3L11A 3N9MA 2L5UA 2JMDA 3O34A 1G25A 1WEUA 3GV4A 4C9ZA 3HCUA 3O7AA 3KDEC 4R8PK 2D8UA 4B86C 2L75A 2KFTA 3HCTA 3SHBA 4H9DA 2XOCA 4N4FA 5LCWB 2CT2A 1CHCA 2VPDA 1WFKA 3L1XA 2VPBA 3LQJA 3HTKC 3PUQA 2LQ6A 2LXPC 3DWDA 5H1UA 2ECJA 2RR4A 4O62A 2P57A 2LGGA 1Z2QA 1WEOA 3N9PA 2M6MA 2KREA 4FIPA 4FO9A 4N3WA 2H0DB 2ZETC 1E4UA 2YHNA 3M99A 3KV5A 3U5OA 2ECNA 3DQVR 2K16A 2JUNA 2ECIA 1T1HA 4UP0A 2EODA 1WIMA 1X4JA 2CSZA 1WEEA 2XP0A 5JG6A 3LQHA 1X4UA 5TABA 3U5NA 4IC2A 1V87A 3M62A 2G43A 4MVTA 5SVXA 2E61A 2KGGA 2ECWA 5LKXA 4LKAA 2LGVA 5TRBA 2XB1A 3SOWA 4PPEA 2MA5A 4AUQB 3LRQA 2M1RA 3FM8C 3GL6A 2JM3A 3LVQE 1WESA 5SVIA 2F42A 4FJCA 2VJEA 3O37A 5B79A 4Z0RA 4ZQLA 2LRIC 2L0BA 3ZPV1 2DSMA 2IQJA 3T6RA 2EGPA 5D1LB 4V3LC 3ZYQA 1DCQA 3T7LA 2ECGA 1IYMA 4WA6A 4AP4A 1JM7B 4QF2A 3C6WA 2L80A 4GNFA 4NN2A 2KE1A 1BORA 2AN6A 2MNYA 3Q1DA 2VP7A 4YABA 4TKPB 3RPGB 2CSYA 3MHHA 4LJNA 2ECTA 4W4UA 5LKTA 1WEMA 2M3HA 2PNXA 4I7DA 2HDPA 3U5MA 5C11A 4O64A 3QZVA 4YADA 2C2LA 3KV6A 5TBNA 2OXQC 5B78A 2LXHC 2MKEA 2EXUA 2PUYA 4ZDTA 1WGMA 4CCGX 4S3OB 4GNEA 2F6NA 4WZ2A 2MNZA 5FB0A 2K1JA 4YC9A 4YBMA 1WENA 3M7KA 2D8SA 2FD4A 2G6QA 2NAAA 2Y1NA 4Z0OA 2K4DA 3PHDA 2CRRA 2ECVA 4A4BA 2YT5A 2JMJA 1JOCA 4GNDA 2F6JA 5FB1A 2M85A 5C13A 3O35A 4A49A 1FP0A 2MT5A 3MDBC 5EYAF 1MBMA 4AVXA 2LAUA 2YVRA 4OGEA 4FK5A 2KU3A 2C2VS 4R7EA 2YW8A 4LK9A 3JUEA 4L58A 5B75A 2RI7A 5DINA 3O36A 3FJUB 2KR4A 3LVRE 3O47A 1F62A 5B77A 5B76A 2L43A 5SVIB 4OGCA 2K17A 5B8DA 5LKUA 2YUCA 2VJFB 2KWNA 3MHSA
chains in the Genus database with same CATH topology
3H7HA 2XOYA 3DWDA 3FJUB 3FM8C 3LJUX 4QQ4A 4F1PA 2RR4A 2JUNA 4Z0OA 5K3QA 2JM3A 2B0OE 2YREA 1DCQA 2FFWA 2CRRA 2XP0A 3DDTA 2P57A 3LVQE 3E2DA 2M13A 5SVIA 3FEHA 3LVRE 3O47A 4O62A 3KDEC 5SVYA 2MKEA 2EXUA 2D8UA 2OWAA 5SVXA 4Z0RA 2CSVA 5SVIB 3LDYA 3MDBC 4OGCA 2E61A 3PLWA 2LAUA 3SUBA 4H9DA 2CONA 2CRWA 2FD4A 2YVRA 2XOCA 4OGEA 2DJAA 2IQJA 2XOZA 3T9KA 3Q1DA 2KKYA 2EGMA 3M7KA 3JUEA 2KKXA 2L7PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DWD A;  4F1P A;  3FM8 C;  2B0O E;  1DCQ A;  3LVQ E;  2CRR A;  2P57 A;  3FEH A;  3LVR E;  3O47 A;  2OWA A;  3MDB C;  3SUB A;  2CRW A;  2IQJ A;  3T9K A;  3JUE A;  3LJU X; 
#chains in the Genus database with same CATH topology
 2MA6 A;  1HYI A;  4WZ0 A;  3N9Q A;  3ZTG A;  5KH9 A;  2H0D A;  2YRE A;  3VK6 A;  5I3L A;  2YU4 A;  3FAN A;  2LV9 A;  2KWO A;  1RMD A;  2OWA A;  3ZNI A;  2CON A;  2CRW A;  2EA6 A;  3PUR A;  2CKL B;  3C5K A;  2KGI A;  1ZBD B;  2EGM A;  4F52 B;  2YQM A;  3N9N A;  2XOZ A;  4L7X A;  4QQ4 A;  4Q6F A;  4CA1 A;  3L1Z B;  3ZVY A;  3ZVZ B;  4YBS A;  3FEH A;  4AYC B;  5H1V A;  2YYR A;  3SUB A;  1X4I A;  4MSX A;  5TDW A;  2QIC A;  2YSJ A;  1MM3 A;  5AIU A;  1HYJ A;  3KNV A;  2XOY A;  4IC3 A;  1DVP A;  1VFY A;  1Z6U A;  2MUM A;  4GB0 A;  4YAX A;  3M63 A;  2LGK A;  2FUI A;  5D1K B;  2YHO A;  3PLW A;  3EB6 A;  1U6G B;  3FL2 A;  3RTR B;  2G45 A;  2Y43 A;  3N9O A;  2LDR A;  5J3X A;  2E6S A;  2MIQ A;  2VNF A;  4GNG A;  2KWK A;  2RSD A;  3SOX A;  4X3G A;  4P5O B;  3LDY A;  5H1T A;  1WIL A;  5KH3 A;  5KH7 A;  1LDK C;  5LKZ A;  1MM2 A;  4A4C A;  4BBQ A;  3O70 A;  1WEP A;  4QF3 A;  2KKY A;  4R2Y A;  1LDJ B;  3LJU X;  2YUR A;  3H7H A;  4UI9 B;  2VPE A;  5TDR A;  2JMI A;  4YAT A;  5K3Q A;  2B0O E;  2QIZ A;  5FEY A;  4WZ3 B;  2YSM A;  3ASL A;  2KYU A;  2HYE D;  5SVY A;  2BAY A;  5G0F A;  3O33 A;  4V3K C;  2VJE B;  4B7Y C;  2JRJ A;  2DJA A;  2YQL A;  2FUU A;  2KKX A;  2UZG A;  2XEU A;  2L7P A;  2KWJ A;  3RPG C;  4PTB A;  4A0C D;  2FFW A;  3HCS A;  4LLB A;  2DX8 A;  2IDA A;  1XWH A;  5DKA A;  4ZUX U;  2CSV A;  1VYX A;  2MD8 C;  4S3O C;  5H9M A;  4UP5 A;  5G04 B;  3IHP A;  3NG2 A;  4F1P A;  5G05 B;  1VD4 A;  1WE9 A;  2LGL A;  3DDT A;  3V43 A;  2LN0 A;  3ZPV E;  3E2D A;  2M13 A;  3FAO A;  2E6R A;  2I50 A;  3DPL R;  2VJF A;  1WEW A;  4YBT A;  3N9L A;  2KIZ A;  4I7C A;  1FBV A;  1Z60 A;  5FER A;  3T9K A;  3LQI A;  2QJ0 A;  4XI1 A;  3I2D A;  2Y1M A;  2MD7 B;  3SOU A;  5D1M B;  5AIT A;  2CKL A;  1WEQ A;  4LAD B;  4BHW A;  4I7B A;  2VPG A;  2FSA A;  1N87 A;  3EB5 A;  1WEV A;  1K2F A;  3KQI A;  4AYC A;  1JM7 A;  3U5P A;  3L11 A;  3N9M A;  2L5U A;  2JMD A;  3O34 A;  1G25 A;  1WEU A;  3GV4 A;  4C9Z A;  3HCU A;  3O7A A;  3KDE C;  4R8P K;  2D8U A;  4B86 C;  2L75 A;  2KFT A;  3HCT A;  3SHB A;  4H9D A;  2XOC A;  4N4F A;  5LCW B;  2CT2 A;  1CHC A;  2VPD A;  1WFK A;  3L1X A;  2VPB A;  3LQJ A;  3HTK C;  3PUQ A;  2LQ6 A;  2LXP C;  3DWD A;  5H1U A;  2ECJ A;  2RR4 A;  4O62 A;  2P57 A;  2LGG A;  1Z2Q A;  1WEO A;  3N9P A;  2M6M A;  2KRE A;  4FIP A;  4FO9 A;  4N3W A;  2H0D B;  2ZET C;  1E4U A;  2YHN A;  3M99 A;  3KV5 A;  3U5O A;  2ECN A;  3DQV R;  2K16 A;  2JUN A;  2ECI A;  1T1H A;  4UP0 A;  2EOD A;  1WIM A;  1X4J A;  2CSZ A;  1WEE A;  2XP0 A;  5JG6 A;  3LQH A;  1X4U A;  5TAB A;  3U5N A;  4IC2 A;  1V87 A;  3M62 A;  2G43 A;  4MVT A;  5SVX A;  2E61 A;  2KGG A;  2ECW A;  5LKX A;  4LKA A;  2LGV A;  5TRB A;  2XB1 A;  3SOW A;  4PPE A;  2MA5 A;  4AUQ B;  3LRQ A;  2M1R A;  3FM8 C;  3GL6 A;  2JM3 A;  3LVQ E;  1WES A;  5SVI A;  2F42 A;  4FJC A;  2VJE A;  3O37 A;  5B79 A;  4Z0R A;  4ZQL A;  2LRI C;  2L0B A;  3ZPV 1;  2DSM A;  2IQJ A;  3T6R A;  2EGP A;  5D1L B;  4V3L C;  3ZYQ A;  1DCQ A;  3T7L A;  2ECG A;  1IYM A;  4WA6 A;  4AP4 A;  1JM7 B;  4QF2 A;  3C6W A;  2L80 A;  4GNF A;  4NN2 A;  2KE1 A;  1BOR A;  2AN6 A;  2MNY A;  3Q1D A;  2VP7 A;  4YAB A;  4TKP B;  3RPG B;  2CSY A;  3MHH A;  4LJN A;  2ECT A;  4W4U A;  5LKT A;  1WEM A;  2M3H A;  2PNX A;  4I7D A;  2HDP A;  3U5M A;  5C11 A;  4O64 A;  3QZV A;  4YAD A;  2C2L A;  3KV6 A;  5TBN A;  2OXQ C;  5B78 A;  2LXH C;  2MKE A;  2EXU A;  2PUY A;  4ZDT A;  1WGM A;  4CCG X;  4S3O B;  4GNE A;  2F6N A;  4WZ2 A;  2MNZ A;  5FB0 A;  2K1J A;  4YC9 A;  4YBM A;  1WEN A;  3M7K A;  2D8S A;  2FD4 A;  2G6Q A;  2NAA A;  2Y1N A;  4Z0O A;  2K4D A;  3PHD A;  2CRR A;  2ECV A;  4A4B A;  2YT5 A;  2JMJ A;  1JOC A;  4GND A;  2F6J A;  5FB1 A;  2M85 A;  5C13 A;  3O35 A;  4A49 A;  1FP0 A;  2MT5 A;  3MDB C;  5EYA F;  1MBM A;  4AVX A;  2LAU A;  2YVR A;  4OGE A;  4FK5 A;  2KU3 A;  2C2V S;  4R7E A;  2YW8 A;  4LK9 A;  3JUE A;  4L58 A;  5B75 A;  2RI7 A;  5DIN A;  3O36 A;  3FJU B;  2KR4 A;  3LVR E;  3O47 A;  1F62 A;  5B77 A;  5B76 A;  2L43 A;  5SVI B;  4OGC A;  2K17 A;  5B8D A;  5LKU A;  2YUC A;  2VJF B;  2KWN A;  3MHS A; 
#chains in the Genus database with same CATH homology
 3H7H A;  2XOY A;  3DWD A;  3FJU B;  3FM8 C;  3LJU X;  4QQ4 A;  4F1P A;  2RR4 A;  2JUN A;  4Z0O A;  5K3Q A;  2JM3 A;  2B0O E;  2YRE A;  1DCQ A;  2FFW A;  2CRR A;  2XP0 A;  3DDT A;  2P57 A;  3LVQ E;  3E2D A;  2M13 A;  5SVI A;  3FEH A;  3LVR E;  3O47 A;  4O62 A;  3KDE C;  5SVY A;  2MKE A;  2EXU A;  2D8U A;  2OWA A;  5SVX A;  4Z0R A;  2CSV A;  5SVI B;  3LDY A;  3MDB C;  4OGC A;  2E61 A;  3PLW A;  2LAU A;  3SUB A;  4H9D A;  2CON A;  2CRW A;  2FD4 A;  2YVR A;  2XOC A;  4OGE A;  2DJA A;  2IQJ A;  2XOZ A;  3T9K A;  3Q1D A;  2KKY A;  2EGM A;  3M7K A;  3JUE A;  2KKX A;  2L7P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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