2D8BA

Solution structure of the second tandem cofilin-domain of mouse twinfilin
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
166
structure length
166
Chain Sequence
GSSGSSGEVQTDVSVDTKHQTLQGVAFPISRDAFQALEKLSKKQLNYVQLEIDIKNETIILANTENTELRDLPKRIPKDSARYHFFLYKHSHEGDYLESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYDEVHSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Twinfilin-1
publication title NMR solution structures of actin depolymerizing factor homology domains
pubmed doi rcsb
source organism Mus musculus
total genus 24
structure length 166
sequence length 166
ec nomenclature
pdb deposition date 2005-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 2d8bA01
5KYNA 2FF3A 1PD1A 2D8BA 5KYYA 3A5LS 3EFOB 2NUPB 3EH2A 5A1MA 2XF1A 3EGXA 1CNUA 4KEEA 1AK7A 2LXXA 1T44G 1X67A 2NUPA 1T3XA 2FH4A 2MP4A 1M4JA 5DD2A 3CI5G 1JHWA 2HD7A 5KYXB 1AK6A 3A5NS 2I2QA 3EGDA 1C0FS 3EG9A 3A5OS 2FH1A 2FH3A 1YAGG 1RGIG 1TVJA 2KVKA 1P8XA 2LLFA 4CBXG 1M2OA 2W0IA 1EQYS 3TU5B 3FG6A 3FG7A 3FFKA 3EFOA 5KYUB 4Z94G 1UDMA 1NPHA 5KYWB 1P8ZG 2XFAA 1SVRA 2NUTB 1ESVS 1HQZ1 3EH1A 4S10C 1SVQA 4PKGG 3Q2BA 2QTVA 4JD2H 4PKHB 1YVNG 1AHQA 5KYXA 4PKIG 1NM1G 3L50A 1VKKA 4BEX1 5IVUA 1F7SA 1WFSA 4CBUG 3CJCG 1M2VB 2LJ8A 4KEDA 3DAWB 5FAFA 1D0NA 2MV2A 1MDUA 5L6WC 3FFNA 1QPVA 5KYYB 1H1VG 1PD0A 2FGHA 5KYUA 3CJBG 1WM4A 3EGXB 5KYWA 2MOTA 2NUTA 1COFA 1WNJA 2VILA 1Q8XA 3A5MS 1NMDG 1V6FA 5HVKD 1C0GS 1KCQA 2L72A 4KEFA 5FAEA 1DEJS 1J72A 1PCXA 2VIKA 1VFQA 3EGDB 2FF6G 1D4XG 3EG9B 4LIZA 3CIPG 1SVYA 1TMWA 2FH2A 1Q8GA 1CFYA 1T2LA 2VACA 5HVKB 1NLVG 4CBWG 1M2VA 1T3YA
chains in the Genus database with same CATH superfamily
5KYNA 2FF3A 1PD1A 2D8BA 5KYYA 3A5LS 3EFOB 2NUPB 3EH2A 5A1MA 2XF1A 3EGXA 1CNUA 4KEEA 1AK7A 2LXXA 1T44G 1X67A 2NUPA 1T3XA 2FH4A 2MP4A 1M4JA 5DD2A 3CI5G 1JHWA 2HD7A 5KYXB 1AK6A 3A5NS 2I2QA 3EGDA 1C0FS 3EG9A 3A5OS 2FH1A 2FH3A 1YAGG 1RGIG 1TVJA 2KVKA 1P8XA 2LLFA 4CBXG 1M2OA 2W0IA 1EQYS 3TU5B 3FG6A 3FG7A 3FFKA 3EFOA 5KYUB 4Z94G 1UDMA 1NPHA 5KYWB 1P8ZG 2XFAA 1SVRA 2NUTB 1ESVS 1HQZ1 3EH1A 4S10C 1SVQA 4PKGG 3Q2BA 2QTVA 4JD2H 4PKHB 1YVNG 1AHQA 5KYXA 4PKIG 1NM1G 3L50A 1VKKA 4BEX1 5IVUA 1F7SA 1WFSA 4CBUG 3CJCG 1M2VB 2LJ8A 4KEDA 3DAWB 5FAFA 1D0NA 2MV2A 1MDUA 5L6WC 3FFNA 1QPVA 5KYYB 1H1VG 3DA7A 1PD0A 2FGHA 5KYUA 3CJBG 1WM4A 3EGXB 5KYWA 2MOTA 2NUTA 1COFA 1WNJA 2VILA 1Q8XA 3A5MS 1NMDG 1V6FA 5HVKD 1C0GS 1KCQA 2L72A 4KEFA 5FAEA 1DEJS 1J72A 1PCXA 2VIKA 1VFQA 3EGDB 2FF6G 1D4XG 3EG9B 4LIZA 3CIPG 1SVYA 1TMWA 2FH2A 1Q8GA 1CFYA 1T2LA 2VACA 5HVKB 1NLVG 4CBWG 1M2VA 1T3YA
chains in the Genus database with same CATH topology
5KYNA 2FF3A 1PD1A 2D8BA 5KYYA 3A5LS 3EFOB 2NUPB 3EH2A 5A1MA 2XF1A 3EGXA 1CNUA 4KEEA 1AK7A 2LXXA 1T44G 1X67A 2NUPA 1T3XA 2FH4A 2MP4A 1M4JA 5DD2A 3CI5G 1JHWA 2HD7A 5KYXB 1AK6A 3A5NS 2I2QA 3EGDA 1C0FS 3EG9A 3A5OS 2FH1A 2FH3A 1YAGG 1RGIG 1TVJA 2KVKA 1P8XA 2LLFA 4CBXG 1M2OA 2W0IA 1EQYS 3TU5B 3FG6A 3FG7A 3FFKA 3EFOA 5KYUB 4Z94G 1UDMA 1NPHA 5KYWB 1P8ZG 2XFAA 1SVRA 2NUTB 1ESVS 1HQZ1 3EH1A 4S10C 1SVQA 4PKGG 3Q2BA 2QTVA 4JD2H 4PKHB 1YVNG 1AHQA 5KYXA 4PKIG 1NM1G 3L50A 1VKKA 4BEX1 5IVUA 1F7SA 1WFSA 4CBUG 3CJCG 1M2VB 2LJ8A 4KEDA 3DAWB 5FAFA 1D0NA 2MV2A 1MDUA 5L6WC 3FFNA 1QPVA 5KYYB 1H1VG 3DA7A 1PD0A 2FGHA 5KYUA 3CJBG 1WM4A 3EGXB 5KYWA 2MOTA 2NUTA 1COFA 1WNJA 2VILA 1Q8XA 3A5MS 1NMDG 1V6FA 5HVKD 1C0GS 1KCQA 2L72A 4KEFA 5FAEA 1DEJS 1J72A 1PCXA 2VIKA 1VFQA 3EGDB 2FF6G 1D4XG 3EG9B 4LIZA 3CIPG 1SVYA 1TMWA 2FH2A 1Q8GA 1CFYA 1T2LA 2VACA 5HVKB 1NLVG 4CBWG 1M2VA 1T3YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KYN A;  2FF3 A;  1PD1 A;  2D8B A;  5KYY A;  3A5L S;  3EFO B;  2NUP B;  3EH2 A;  5A1M A;  2XF1 A;  3EGX A;  1CNU A;  4KEE A;  1AK7 A;  2LXX A;  1T44 G;  1X67 A;  2NUP A;  1T3X A;  2FH4 A;  2MP4 A;  1M4J A;  5DD2 A;  3CI5 G;  1JHW A;  2HD7 A;  5KYX B;  1AK6 A;  3A5N S;  2I2Q A;  3EGD A;  1C0F S;  3EG9 A;  3A5O S;  2FH1 A;  2FH3 A;  1YAG G;  1RGI G;  1TVJ A;  2KVK A;  1P8X A;  2LLF A;  4CBX G;  1M2O A;  2W0I A;  1EQY S;  3TU5 B;  3FG6 A;  3FG7 A;  3FFK A;  3EFO A;  5KYU B;  4Z94 G;  1UDM A;  1NPH A;  5KYW B;  1P8Z G;  2XFA A;  1SVR A;  2NUT B;  1ESV S;  1HQZ 1;  3EH1 A;  4S10 C;  1SVQ A;  4PKG G;  3Q2B A;  2QTV A;  4JD2 H;  4PKH B;  1YVN G;  1AHQ A;  5KYX A;  4PKI G;  1NM1 G;  3L50 A;  1VKK A;  4BEX 1;  5IVU A;  1F7S A;  1WFS A;  4CBU G;  3CJC G;  1M2V B;  2LJ8 A;  4KED A;  3DAW B;  5FAF A;  1D0N A;  2MV2 A;  1MDU A;  5L6W C;  3FFN A;  1QPV A;  5KYY B;  1H1V G;  1PD0 A;  2FGH A;  5KYU A;  3CJB G;  1WM4 A;  3EGX B;  5KYW A;  2MOT A;  2NUT A;  1COF A;  1WNJ A;  2VIL A;  1Q8X A;  3A5M S;  1NMD G;  1V6F A;  5HVK D;  1C0G S;  1KCQ A;  2L72 A;  4KEF A;  5FAE A;  1DEJ S;  1J72 A;  1PCX A;  2VIK A;  1VFQ A;  3EGD B;  2FF6 G;  1D4X G;  3EG9 B;  4LIZ A;  3CIP G;  1SVY A;  1TMW A;  2FH2 A;  1Q8G A;  1CFY A;  1T2L A;  2VAC A;  5HVK B;  1NLV G;  4CBW G;  1M2V A;  1T3Y A; 
#chains in the Genus database with same CATH topology
 5KYN A;  2FF3 A;  1PD1 A;  2D8B A;  5KYY A;  3A5L S;  3EFO B;  2NUP B;  3EH2 A;  5A1M A;  2XF1 A;  3EGX A;  1CNU A;  4KEE A;  1AK7 A;  2LXX A;  1T44 G;  1X67 A;  2NUP A;  1T3X A;  2FH4 A;  2MP4 A;  1M4J A;  5DD2 A;  3CI5 G;  1JHW A;  2HD7 A;  5KYX B;  1AK6 A;  3A5N S;  2I2Q A;  3EGD A;  1C0F S;  3EG9 A;  3A5O S;  2FH1 A;  2FH3 A;  1YAG G;  1RGI G;  1TVJ A;  2KVK A;  1P8X A;  2LLF A;  4CBX G;  1M2O A;  2W0I A;  1EQY S;  3TU5 B;  3FG6 A;  3FG7 A;  3FFK A;  3EFO A;  5KYU B;  4Z94 G;  1UDM A;  1NPH A;  5KYW B;  1P8Z G;  2XFA A;  1SVR A;  2NUT B;  1ESV S;  1HQZ 1;  3EH1 A;  4S10 C;  1SVQ A;  4PKG G;  3Q2B A;  2QTV A;  4JD2 H;  4PKH B;  1YVN G;  1AHQ A;  5KYX A;  4PKI G;  1NM1 G;  3L50 A;  1VKK A;  4BEX 1;  5IVU A;  1F7S A;  1WFS A;  4CBU G;  3CJC G;  1M2V B;  2LJ8 A;  4KED A;  3DAW B;  5FAF A;  1D0N A;  2MV2 A;  1MDU A;  5L6W C;  3FFN A;  1QPV A;  5KYY B;  1H1V G;  3DA7 A;  1PD0 A;  2FGH A;  5KYU A;  3CJB G;  1WM4 A;  3EGX B;  5KYW A;  2MOT A;  2NUT A;  1COF A;  1WNJ A;  2VIL A;  1Q8X A;  3A5M S;  1NMD G;  1V6F A;  5HVK D;  1C0G S;  1KCQ A;  2L72 A;  4KEF A;  5FAE A;  1DEJ S;  1J72 A;  1PCX A;  2VIK A;  1VFQ A;  3EGD B;  2FF6 G;  1D4X G;  3EG9 B;  4LIZ A;  3CIP G;  1SVY A;  1TMW A;  2FH2 A;  1Q8G A;  1CFY A;  1T2L A;  2VAC A;  5HVK B;  1NLV G;  4CBW G;  1M2V A;  1T3Y A; 
#chains in the Genus database with same CATH homology
 5KYN A;  2FF3 A;  1PD1 A;  2D8B A;  5KYY A;  3A5L S;  3EFO B;  2NUP B;  3EH2 A;  5A1M A;  2XF1 A;  3EGX A;  1CNU A;  4KEE A;  1AK7 A;  2LXX A;  1T44 G;  1X67 A;  2NUP A;  1T3X A;  2FH4 A;  2MP4 A;  1M4J A;  5DD2 A;  3CI5 G;  1JHW A;  2HD7 A;  5KYX B;  1AK6 A;  3A5N S;  2I2Q A;  3EGD A;  1C0F S;  3EG9 A;  3A5O S;  2FH1 A;  2FH3 A;  1YAG G;  1RGI G;  1TVJ A;  2KVK A;  1P8X A;  2LLF A;  4CBX G;  1M2O A;  2W0I A;  1EQY S;  3TU5 B;  3FG6 A;  3FG7 A;  3FFK A;  3EFO A;  5KYU B;  4Z94 G;  1UDM A;  1NPH A;  5KYW B;  1P8Z G;  2XFA A;  1SVR A;  2NUT B;  1ESV S;  1HQZ 1;  3EH1 A;  4S10 C;  1SVQ A;  4PKG G;  3Q2B A;  2QTV A;  4JD2 H;  4PKH B;  1YVN G;  1AHQ A;  5KYX A;  4PKI G;  1NM1 G;  3L50 A;  1VKK A;  4BEX 1;  5IVU A;  1F7S A;  1WFS A;  4CBU G;  3CJC G;  1M2V B;  2LJ8 A;  4KED A;  3DAW B;  5FAF A;  1D0N A;  2MV2 A;  1MDU A;  5L6W C;  3FFN A;  1QPV A;  5KYY B;  1H1V G;  3DA7 A;  1PD0 A;  2FGH A;  5KYU A;  3CJB G;  1WM4 A;  3EGX B;  5KYW A;  2MOT A;  2NUT A;  1COF A;  1WNJ A;  2VIL A;  1Q8X A;  3A5M S;  1NMD G;  1V6F A;  5HVK D;  1C0G S;  1KCQ A;  2L72 A;  4KEF A;  5FAE A;  1DEJ S;  1J72 A;  1PCX A;  2VIK A;  1VFQ A;  3EGD B;  2FF6 G;  1D4X G;  3EG9 B;  4LIZ A;  3CIP G;  1SVY A;  1TMW A;  2FH2 A;  1Q8G A;  1CFY A;  1T2L A;  2VAC A;  5HVK B;  1NLV G;  4CBW G;  1M2V A;  1T3Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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