2D96A

Solution structure of the death domain of nuclear factor nf-kappa-b p100
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
109
structure length
109
Chain Sequence
GSSGSSGPGLSLGDTALQNLEQLLDGPEAQGSWAELAERLGLRSLVDTYRQTTSPSGSLLRSYELAGGDLAGLLEALSDMGLEEGVRLLRGPETRDKLPSTEVSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords Nuclear factor NF-kappa-B p100 subunit
publication title Solution structure of the Death domain of Nuclear factor NF-kappa-B p100
rcsb
source organism Homo sapiens
total genus 17
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 2005-12-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00531 Death Death domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2d96A01
3T6PA 4N1LA 2OF5H 3J63A 2YGSA 2MS7A 4O6XA 4LWDA 2YU0A 2DO9A 1NGRA 3QF2A 2NZ7A 2N1FA 2DBHA 3J6JA 2LWEA 4IZ7B 2MN4A 2OF5A 4RHWE 4M9ZA 2DBDA 3MOPG 4M9SA 1A1ZA 4P4HA 2KM6A 3EZQB 4M9XA 1CY5A 2D96A 4UZ0A 3MOPA 4I16A 4NQKA 2G7RA 4JQWA 1PN5A 4O9LA 2N00A 1E41A 2GF5A 2L6AA 1DDFA 4F44A 3YGSC 1DGNA 2BBZA 1FADA 2A9IA 1Z6TA 2LWDA 1E3YA 1WXPA 1CWWA 4N1JA 2YVIA 2A5YB 4DWNA 2MPCA 3EZQA 2DBGA 4O9FA 3KATA 2LS7A 2F1SA 2NSNA 2MS8A 4O7QA 2B1WA 4D8OA 4A2WA 4A2QA 3LQRA 2MB9A 2IB1A 2N97A 4E9MA 2N7ZA 2VGQA 4EWIA 4F42A 1C15A 3YGSP 3MOPK 1UCPA 1D2ZB 2N80A 2NAQA 2O71A 2BBRA 4IZ5E 2YQFA 2M5VA 2N83A 1WH4A 4P4HI 2KN6A 4RHWA 1YGOA 2P1HA 1ICHA 4QOBA 1N3KA 3CL3A 4IZAB 3LQQA 1A1WA 4JUPA 1WMGA 2HM2Q 4N1KA 4ZBWA 4FH0A 3CRDA 2DBFA 1D2ZA 2L9MA
chains in the Genus database with same CATH superfamily
3T6PA 4N1LA 2OF5H 3J63A 2YGSA 2MS7A 4O6XA 4LWDA 2YU0A 2DO9A 1NGRA 3QF2A 2NZ7A 2N1FA 2DBHA 3J6JA 2LWEA 4IZ7B 2MN4A 2OF5A 4RHWE 4M9ZA 2DBDA 3MOPG 4M9SA 1A1ZA 4P4HA 2KM6A 3EZQB 4M9XA 1CY5A 2D96A 4UZ0A 3MOPA 4I16A 4NQKA 2G7RA 2XV9A 4JQWA 1PN5A 4O9LA 2N00A 1E41A 2GF5A 2L6AA 1DDFA 4F44A 3YGSC 1DGNA 2BBZA 1FADA 2A9IA 1Z6TA 2LWDA 1E3YA 1WXPA 1CWWA 4N1JA 2YVIA 2A5YB 4DWNA 2MJMA 2MPCA 3EZQA 2DBGA 4O9FA 3KATA 2LS7A 2F1SA 2NSNA 2MS8A 4O7QA 2B1WA 4D8OA 4A2WA 4A2QA 3LQRA 2MB9A 2IB1A 2N97A 4E9MA 2N7ZA 2VGQA 4EWIA 4F42A 1C15A 3YGSP 3MOPK 1UCPA 1D2ZB 2N80A 2NAQA 2O71A 2BBRA 4IZ5E 2YQFA 2M5VA 2N83A 1WH4A 4P4HI 2KN6A 4RHWA 1YGOA 2P1HA 1ICHA 4QOBA 1N3KA 3CL3A 4IZAB 3LQQA 1A1WA 4JUPA 1WMGA 2HM2Q 4N1KA 4ZBWA 4FH0A 3CRDA 2DBFA 1D2ZA 2L9MA
chains in the Genus database with same CATH topology
3T6PA 4N1LA 2OF5H 3J63A 2YGSA 2MS7A 4O6XA 4LWDA 2YU0A 2DO9A 1NGRA 3QF2A 2NZ7A 2N1FA 2DBHA 3J6JA 2LWEA 4IZ7B 2MN4A 2OF5A 4RHWE 4M9ZA 2DBDA 3MOPG 4M9SA 1A1ZA 4P4HA 2KM6A 3EZQB 4M9XA 1CY5A 2D96A 4UZ0A 3MOPA 4I16A 4NQKA 2G7RA 2XV9A 4JQWA 1PN5A 4O9LA 2N00A 1E41A 2GF5A 2L6AA 1DDFA 4F44A 3YGSC 1DGNA 2BBZA 1FADA 2A9IA 1Z6TA 2LWDA 1E3YA 1WXPA 1CWWA 4N1JA 2YVIA 2A5YB 4DWNA 2MJMA 2MPCA 3EZQA 2DBGA 4O9FA 3KATA 2LS7A 2F1SA 2NSNA 2MS8A 4O7QA 2B1WA 4D8OA 4A2WA 4A2QA 3LQRA 2MB9A 2IB1A 2N97A 4E9MA 2N7ZA 2VGQA 4EWIA 4F42A 1C15A 3YGSP 3MOPK 1UCPA 1D2ZB 2N80A 2NAQA 2O71A 2BBRA 4IZ5E 2YQFA 2M5VA 2N83A 1WH4A 4P4HI 2KN6A 4RHWA 1YGOA 2P1HA 1ICHA 4QOBA 1N3KA 3CL3A 4IZAB 3LQQA 1A1WA 4JUPA 1WMGA 2HM2Q 4N1KA 4ZBWA 4FH0A 3CRDA 2DBFA 1D2ZA 2L9MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3T6P A;  4N1L A;  2OF5 H;  3J63 A;  2YGS A;  2MS7 A;  4O6X A;  4LWD A;  2YU0 A;  2DO9 A;  1NGR A;  3QF2 A;  2NZ7 A;  2N1F A;  2DBH A;  3J6J A;  2LWE A;  4IZ7 B;  2MN4 A;  2OF5 A;  4RHW E;  4M9Z A;  2DBD A;  3MOP G;  4M9S A;  1A1Z A;  4P4H A;  2KM6 A;  3EZQ B;  4M9X A;  1CY5 A;  2D96 A;  4UZ0 A;  3MOP A;  4I16 A;  4NQK A;  2G7R A;  4JQW A;  1PN5 A;  4O9L A;  2N00 A;  1E41 A;  2GF5 A;  2L6A A;  1DDF A;  4F44 A;  3YGS C;  1DGN A;  2BBZ A;  1FAD A;  2A9I A;  1Z6T A;  2LWD A;  1E3Y A;  1WXP A;  1CWW A;  4N1J A;  2YVI A;  2A5Y B;  4DWN A;  2MPC A;  3EZQ A;  2DBG A;  4O9F A;  3KAT A;  2LS7 A;  2F1S A;  2NSN A;  2MS8 A;  4O7Q A;  2B1W A;  4D8O A;  4A2W A;  4A2Q A;  3LQR A;  2MB9 A;  2IB1 A;  2N97 A;  4E9M A;  2N7Z A;  2VGQ A;  4EWI A;  4F42 A;  1C15 A;  3YGS P;  3MOP K;  1UCP A;  1D2Z B;  2N80 A;  2NAQ A;  2O71 A;  2BBR A;  4IZ5 E;  2YQF A;  2M5V A;  2N83 A;  1WH4 A;  4P4H I;  2KN6 A;  4RHW A;  1YGO A;  2P1H A;  1ICH A;  4QOB A;  1N3K A;  3CL3 A;  4IZA B;  3LQQ A;  1A1W A;  4JUP A;  1WMG A;  2HM2 Q;  4N1K A;  4ZBW A;  4FH0 A;  3CRD A;  2DBF A;  1D2Z A;  2L9M A; 
#chains in the Genus database with same CATH topology
 3T6P A;  4N1L A;  2OF5 H;  3J63 A;  2YGS A;  2MS7 A;  4O6X A;  4LWD A;  2YU0 A;  2DO9 A;  1NGR A;  3QF2 A;  2NZ7 A;  2N1F A;  2DBH A;  3J6J A;  2LWE A;  4IZ7 B;  2MN4 A;  2OF5 A;  4RHW E;  4M9Z A;  2DBD A;  3MOP G;  4M9S A;  1A1Z A;  4P4H A;  2KM6 A;  3EZQ B;  4M9X A;  1CY5 A;  2D96 A;  4UZ0 A;  3MOP A;  4I16 A;  4NQK A;  2G7R A;  2XV9 A;  4JQW A;  1PN5 A;  4O9L A;  2N00 A;  1E41 A;  2GF5 A;  2L6A A;  1DDF A;  4F44 A;  3YGS C;  1DGN A;  2BBZ A;  1FAD A;  2A9I A;  1Z6T A;  2LWD A;  1E3Y A;  1WXP A;  1CWW A;  4N1J A;  2YVI A;  2A5Y B;  4DWN A;  2MJM A;  2MPC A;  3EZQ A;  2DBG A;  4O9F A;  3KAT A;  2LS7 A;  2F1S A;  2NSN A;  2MS8 A;  4O7Q A;  2B1W A;  4D8O A;  4A2W A;  4A2Q A;  3LQR A;  2MB9 A;  2IB1 A;  2N97 A;  4E9M A;  2N7Z A;  2VGQ A;  4EWI A;  4F42 A;  1C15 A;  3YGS P;  3MOP K;  1UCP A;  1D2Z B;  2N80 A;  2NAQ A;  2O71 A;  2BBR A;  4IZ5 E;  2YQF A;  2M5V A;  2N83 A;  1WH4 A;  4P4H I;  2KN6 A;  4RHW A;  1YGO A;  2P1H A;  1ICH A;  4QOB A;  1N3K A;  3CL3 A;  4IZA B;  3LQQ A;  1A1W A;  4JUP A;  1WMG A;  2HM2 Q;  4N1K A;  4ZBW A;  4FH0 A;  3CRD A;  2DBF A;  1D2Z A;  2L9M A; 
#chains in the Genus database with same CATH homology
 3T6P A;  4N1L A;  2OF5 H;  3J63 A;  2YGS A;  2MS7 A;  4O6X A;  4LWD A;  2YU0 A;  2DO9 A;  1NGR A;  3QF2 A;  2NZ7 A;  2N1F A;  2DBH A;  3J6J A;  2LWE A;  4IZ7 B;  2MN4 A;  2OF5 A;  4RHW E;  4M9Z A;  2DBD A;  3MOP G;  4M9S A;  1A1Z A;  4P4H A;  2KM6 A;  3EZQ B;  4M9X A;  1CY5 A;  2D96 A;  4UZ0 A;  3MOP A;  4I16 A;  4NQK A;  2G7R A;  2XV9 A;  4JQW A;  1PN5 A;  4O9L A;  2N00 A;  1E41 A;  2GF5 A;  2L6A A;  1DDF A;  4F44 A;  3YGS C;  1DGN A;  2BBZ A;  1FAD A;  2A9I A;  1Z6T A;  2LWD A;  1E3Y A;  1WXP A;  1CWW A;  4N1J A;  2YVI A;  2A5Y B;  4DWN A;  2MJM A;  2MPC A;  3EZQ A;  2DBG A;  4O9F A;  3KAT A;  2LS7 A;  2F1S A;  2NSN A;  2MS8 A;  4O7Q A;  2B1W A;  4D8O A;  4A2W A;  4A2Q A;  3LQR A;  2MB9 A;  2IB1 A;  2N97 A;  4E9M A;  2N7Z A;  2VGQ A;  4EWI A;  4F42 A;  1C15 A;  3YGS P;  3MOP K;  1UCP A;  1D2Z B;  2N80 A;  2NAQ A;  2O71 A;  2BBR A;  4IZ5 E;  2YQF A;  2M5V A;  2N83 A;  1WH4 A;  4P4H I;  2KN6 A;  4RHW A;  1YGO A;  2P1H A;  1ICH A;  4QOB A;  1N3K A;  3CL3 A;  4IZA B;  3LQQ A;  1A1W A;  4JUP A;  1WMG A;  2HM2 Q;  4N1K A;  4ZBW A;  4FH0 A;  3CRD A;  2DBF A;  1D2Z A;  2L9M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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