2DBFA

Solution structure of the death domain in human nuclear factor nf-kappa-b p105 subunit
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
100
structure length
100
Chain Sequence
GSSGSSGDMKQLAEDVKLQLYKLLEIPDPDKNWATLAQKLGLGILNNAFRLSPAPSKTLMDNYEVSGGTVRELVEALRQMGYTEAIEVIQAASSSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords Nuclear factor NF-kappa-B p105 subunit
publication title Solution structure of the Death domain in human Nuclear factor NF-kappa-B p105 subunit
rcsb
source organism Homo sapiens
total genus 21
structure length 100
sequence length 100
ec nomenclature
pdb deposition date 2005-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00531 Death Death domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2dbfA01
4I16A 2F1SA 4P4HA 4LWDA 2M5VA 2N97A 2MN4A 2A9IA 2DBFA 2YQFA 4O9LA 4NQKA 3T6PA 1N3KA 1PN5A 2KN6A 2A5YB 2G7RA 2LWEA 2N83A 1WXPA 1A1WA 1A1ZA 2BBRA 4M9SA 4RHWA 3KATA 4N1KA 3CL3A 3J63A 2D96A 3QF2A 2DBDA 3MOPA 2YGSA 4O9FA 4ZBWA 4A2WA 2N80A 3MOPG 1CWWA 2L6AA 1D2ZB 2HM2Q 4IZ5E 2BBZA 1ICHA 4F42A 1NGRA 2N7ZA 2DBHA 2O71A 2VGQA 2KM6A 4DWNA 3EZQB 2NZ7A 1E41A 1WMGA 3YGSP 2GF5A 4FH0A 4E9MA 4A2QA 2LWDA 2L9MA 2LS7A 2OF5H 2DBGA 4M9XA 2YVIA 2NAQA 2MB9A 4O7QA 2MPCA 3YGSC 4F44A 4P4HI 2N1FA 3MOPK 2N00A 1Z6TA 1C15A 1WH4A 4N1LA 1YGOA 1D2ZA 2MS7A 4N1JA 4RHWE 2B1WA 4D8OA 4QOBA 4EWIA 4JUPA 1UCPA 1DDFA 2NSNA 4JQWA 4O6XA 1CY5A 2P1HA 2IB1A 3EZQA 1FADA 2MS8A 1DGNA 3CRDA 3LQRA 1E3YA 4IZAB 4M9ZA 4UZ0A 3J6JA 2YU0A 2OF5A 4IZ7B 3LQQA 2DO9A
chains in the Genus database with same CATH superfamily
4I16A 2F1SA 4P4HA 4LWDA 2M5VA 2N97A 2MN4A 2A9IA 2DBFA 2YQFA 4O9LA 4NQKA 3T6PA 1N3KA 1PN5A 2KN6A 2A5YB 2G7RA 2LWEA 2N83A 1WXPA 1A1WA 1A1ZA 2BBRA 2MJMA 4M9SA 4RHWA 3KATA 4N1KA 3CL3A 3J63A 2D96A 3QF2A 2DBDA 3MOPA 2YGSA 4O9FA 4ZBWA 4A2WA 2N80A 3MOPG 1CWWA 2L6AA 1D2ZB 2HM2Q 4IZ5E 2BBZA 1ICHA 4F42A 1NGRA 2N7ZA 2DBHA 2O71A 2VGQA 2KM6A 4DWNA 3EZQB 2NZ7A 1E41A 1WMGA 3YGSP 2GF5A 4FH0A 4E9MA 4A2QA 2LWDA 2XV9A 2L9MA 2LS7A 2OF5H 2DBGA 4M9XA 2YVIA 2NAQA 2MB9A 4O7QA 2MPCA 3YGSC 4F44A 4P4HI 2N1FA 3MOPK 2N00A 1Z6TA 1C15A 1WH4A 4N1LA 1YGOA 1D2ZA 2MS7A 4N1JA 4RHWE 2B1WA 4D8OA 4QOBA 4EWIA 4JUPA 1UCPA 1DDFA 2NSNA 4JQWA 4O6XA 1CY5A 2P1HA 2IB1A 3EZQA 1FADA 2MS8A 1DGNA 3CRDA 3LQRA 1E3YA 4IZAB 4M9ZA 4UZ0A 3J6JA 2YU0A 2OF5A 4IZ7B 3LQQA 2DO9A
chains in the Genus database with same CATH topology
4I16A 2F1SA 4P4HA 4LWDA 2M5VA 2N97A 2MN4A 2A9IA 2DBFA 2YQFA 4O9LA 4NQKA 3T6PA 1N3KA 1PN5A 2KN6A 2A5YB 2G7RA 2LWEA 2N83A 1WXPA 1A1WA 1A1ZA 2BBRA 2MJMA 4M9SA 4RHWA 3KATA 4N1KA 3CL3A 3J63A 2D96A 3QF2A 2DBDA 3MOPA 2YGSA 4O9FA 4ZBWA 4A2WA 2N80A 3MOPG 1CWWA 2L6AA 1D2ZB 2HM2Q 4IZ5E 2BBZA 1ICHA 4F42A 1NGRA 2N7ZA 2DBHA 2O71A 2VGQA 2KM6A 4DWNA 3EZQB 2NZ7A 1E41A 1WMGA 3YGSP 2GF5A 4FH0A 4E9MA 4A2QA 2LWDA 2XV9A 2L9MA 2LS7A 2OF5H 2DBGA 4M9XA 2YVIA 2NAQA 2MB9A 4O7QA 2MPCA 3YGSC 4F44A 4P4HI 2N1FA 3MOPK 2N00A 1Z6TA 1C15A 1WH4A 4N1LA 1YGOA 1D2ZA 2MS7A 4N1JA 4RHWE 2B1WA 4D8OA 4QOBA 4EWIA 4JUPA 1UCPA 1DDFA 2NSNA 4JQWA 4O6XA 1CY5A 2P1HA 2IB1A 3EZQA 1FADA 2MS8A 1DGNA 3CRDA 3LQRA 1E3YA 4IZAB 4M9ZA 4UZ0A 3J6JA 2YU0A 2OF5A 4IZ7B 3LQQA 2DO9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4I16 A;  2F1S A;  4P4H A;  4LWD A;  2M5V A;  2N97 A;  2MN4 A;  2A9I A;  2DBF A;  2YQF A;  4O9L A;  4NQK A;  3T6P A;  1N3K A;  1PN5 A;  2KN6 A;  2A5Y B;  2G7R A;  2LWE A;  2N83 A;  1WXP A;  1A1W A;  1A1Z A;  2BBR A;  4M9S A;  4RHW A;  3KAT A;  4N1K A;  3CL3 A;  3J63 A;  2D96 A;  3QF2 A;  2DBD A;  3MOP A;  2YGS A;  4O9F A;  4ZBW A;  4A2W A;  2N80 A;  3MOP G;  1CWW A;  2L6A A;  1D2Z B;  2HM2 Q;  4IZ5 E;  2BBZ A;  1ICH A;  4F42 A;  1NGR A;  2N7Z A;  2DBH A;  2O71 A;  2VGQ A;  2KM6 A;  4DWN A;  3EZQ B;  2NZ7 A;  1E41 A;  1WMG A;  3YGS P;  2GF5 A;  4FH0 A;  4E9M A;  4A2Q A;  2LWD A;  2L9M A;  2LS7 A;  2OF5 H;  2DBG A;  4M9X A;  2YVI A;  2NAQ A;  2MB9 A;  4O7Q A;  2MPC A;  3YGS C;  4F44 A;  4P4H I;  2N1F A;  3MOP K;  2N00 A;  1Z6T A;  1C15 A;  1WH4 A;  4N1L A;  1YGO A;  1D2Z A;  2MS7 A;  4N1J A;  4RHW E;  2B1W A;  4D8O A;  4QOB A;  4EWI A;  4JUP A;  1UCP A;  1DDF A;  2NSN A;  4JQW A;  4O6X A;  1CY5 A;  2P1H A;  2IB1 A;  3EZQ A;  1FAD A;  2MS8 A;  1DGN A;  3CRD A;  3LQR A;  1E3Y A;  4IZA B;  4M9Z A;  4UZ0 A;  3J6J A;  2YU0 A;  2OF5 A;  4IZ7 B;  3LQQ A;  2DO9 A; 
#chains in the Genus database with same CATH topology
 4I16 A;  2F1S A;  4P4H A;  4LWD A;  2M5V A;  2N97 A;  2MN4 A;  2A9I A;  2DBF A;  2YQF A;  4O9L A;  4NQK A;  3T6P A;  1N3K A;  1PN5 A;  2KN6 A;  2A5Y B;  2G7R A;  2LWE A;  2N83 A;  1WXP A;  1A1W A;  1A1Z A;  2BBR A;  2MJM A;  4M9S A;  4RHW A;  3KAT A;  4N1K A;  3CL3 A;  3J63 A;  2D96 A;  3QF2 A;  2DBD A;  3MOP A;  2YGS A;  4O9F A;  4ZBW A;  4A2W A;  2N80 A;  3MOP G;  1CWW A;  2L6A A;  1D2Z B;  2HM2 Q;  4IZ5 E;  2BBZ A;  1ICH A;  4F42 A;  1NGR A;  2N7Z A;  2DBH A;  2O71 A;  2VGQ A;  2KM6 A;  4DWN A;  3EZQ B;  2NZ7 A;  1E41 A;  1WMG A;  3YGS P;  2GF5 A;  4FH0 A;  4E9M A;  4A2Q A;  2LWD A;  2XV9 A;  2L9M A;  2LS7 A;  2OF5 H;  2DBG A;  4M9X A;  2YVI A;  2NAQ A;  2MB9 A;  4O7Q A;  2MPC A;  3YGS C;  4F44 A;  4P4H I;  2N1F A;  3MOP K;  2N00 A;  1Z6T A;  1C15 A;  1WH4 A;  4N1L A;  1YGO A;  1D2Z A;  2MS7 A;  4N1J A;  4RHW E;  2B1W A;  4D8O A;  4QOB A;  4EWI A;  4JUP A;  1UCP A;  1DDF A;  2NSN A;  4JQW A;  4O6X A;  1CY5 A;  2P1H A;  2IB1 A;  3EZQ A;  1FAD A;  2MS8 A;  1DGN A;  3CRD A;  3LQR A;  1E3Y A;  4IZA B;  4M9Z A;  4UZ0 A;  3J6J A;  2YU0 A;  2OF5 A;  4IZ7 B;  3LQQ A;  2DO9 A; 
#chains in the Genus database with same CATH homology
 4I16 A;  2F1S A;  4P4H A;  4LWD A;  2M5V A;  2N97 A;  2MN4 A;  2A9I A;  2DBF A;  2YQF A;  4O9L A;  4NQK A;  3T6P A;  1N3K A;  1PN5 A;  2KN6 A;  2A5Y B;  2G7R A;  2LWE A;  2N83 A;  1WXP A;  1A1W A;  1A1Z A;  2BBR A;  2MJM A;  4M9S A;  4RHW A;  3KAT A;  4N1K A;  3CL3 A;  3J63 A;  2D96 A;  3QF2 A;  2DBD A;  3MOP A;  2YGS A;  4O9F A;  4ZBW A;  4A2W A;  2N80 A;  3MOP G;  1CWW A;  2L6A A;  1D2Z B;  2HM2 Q;  4IZ5 E;  2BBZ A;  1ICH A;  4F42 A;  1NGR A;  2N7Z A;  2DBH A;  2O71 A;  2VGQ A;  2KM6 A;  4DWN A;  3EZQ B;  2NZ7 A;  1E41 A;  1WMG A;  3YGS P;  2GF5 A;  4FH0 A;  4E9M A;  4A2Q A;  2LWD A;  2XV9 A;  2L9M A;  2LS7 A;  2OF5 H;  2DBG A;  4M9X A;  2YVI A;  2NAQ A;  2MB9 A;  4O7Q A;  2MPC A;  3YGS C;  4F44 A;  4P4H I;  2N1F A;  3MOP K;  2N00 A;  1Z6T A;  1C15 A;  1WH4 A;  4N1L A;  1YGO A;  1D2Z A;  2MS7 A;  4N1J A;  4RHW E;  2B1W A;  4D8O A;  4QOB A;  4EWI A;  4JUP A;  1UCP A;  1DDF A;  2NSN A;  4JQW A;  4O6X A;  1CY5 A;  2P1H A;  2IB1 A;  3EZQ A;  1FAD A;  2MS8 A;  1DGN A;  3CRD A;  3LQR A;  1E3Y A;  4IZA B;  4M9Z A;  4UZ0 A;  3J6J A;  2YU0 A;  2OF5 A;  4IZ7 B;  3LQQ A;  2DO9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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