2DG6A

Crystal structure of the putative transcriptional regulator sco5550 from streptomyces coelicolor a3(2)
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
216
structure length
207
Chain Sequence
MRLADLSKRSGVSTATIKYYLREGLLPPGYDEDHLRRLRLVRALIQVGKVPVATAREVLGHVDDDSLGRTVRLGAALWALPQDAEPDEADPAVAAARVEVDRLLELLGWETSRELAPLSPVHRSLVVAVAALRRLDYPWDAELMAPYGELMMEVARRDLDFMETHASEAEKVEMAVAAAVLFQPVLRALHRLAQEEESARRYGIELE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Gene regulation
molecule keywords putative transcriptional regulator
publication title Structural and genomic DNA analysis of a putative transcription factor SCO5550 from Streptomyces coelicolor A3(2): regulating the expression of gene sco5551 as a transcriptional activator with a novel dimer shape
pubmed doi rcsb
source organism Streptomyces coelicolor
total genus 67
structure length 207
sequence length 216
ec nomenclature
pdb deposition date 2006-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00376 MerR MerR family regulatory protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1660.10 Mainly Alpha Orthogonal Bundle Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 2dg6A01
4R22B 3D6YA 1Q05A 5D8CA 4WLSA 2ZHHA 5D90A 4R4EA 3D71A 2DG6A 5I44A 5I41B 2ZHGA 1EXIA 3Q3DA 3UCSA 3Q5PA 3Q5SA 2VZ4A 1Q09A 3HH0A 3IAOA 3D6ZA 1Q07A 1R8DA 1Q06A 3QAOA 2JMLA 3GPVA 5E01A 3D70A 3Q5RA 1JBGA 1Q0AA 3Q2YA 1R8EA 1EXJA 3GP4A 3Q1MA 4J2NA 4WLWA 4R24B 1Q08A
chains in the Genus database with same CATH superfamily
4R22B 3D6YA 1Q05A 3EZ2A 2IEFA 5D8CA 4WLSA 2ZHHA 5D90A 4R4EA 3D71A 2DG6A 5I44A 5I41B 2KVVA 2ZHGA 4LHFA 4DCZA 1EXIA 3Q3DA 3UCSA 3Q5PA 3EZFA 2VZ4A 1Q09A 3Q5SA 3HH0A 3IAOA 3D6ZA 1Q07A 1Y6UA 1Q06A 3EZ9A 3EZ6A 2JMLA 3GPVA 1LX8A 3QAOA 1PM6A 5E01A 1R8DA 3D70A 3Q5RA 1JBGA 1Q0AA 3Q2YA 1R8EA 1EXJA 2OG0A 3GP4A 1RH6A 3Q1MA 4J2NA 4WLWA 4R24B 1Q08A 3EZ7A
chains in the Genus database with same CATH topology
4R22B 3D6YA 1Q05A 3EZ2A 2IEFA 5D8CA 4WLSA 2ZHHA 5D90A 4R4EA 3D71A 2DG6A 5I44A 5I41B 2KVVA 2ZHGA 4LHFA 4DCZA 1EXIA 3Q3DA 3UCSA 3Q5PA 3EZFA 2VZ4A 1Q09A 3Q5SA 3HH0A 3IAOA 3D6ZA 1Q07A 1Y6UA 1Q06A 3EZ9A 3EZ6A 2JMLA 3GPVA 1LX8A 3QAOA 1PM6A 5E01A 1R8DA 3D70A 3Q5RA 1JBGA 1Q0AA 3Q2YA 1R8EA 1EXJA 2OG0A 3GP4A 1RH6A 3Q1MA 4J2NA 4WLWA 4R24B 1Q08A 3EZ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4R22 B;  3D6Y A;  1Q05 A;  5D8C A;  4WLS A;  2ZHH A;  5D90 A;  4R4E A;  3D71 A;  2DG6 A;  5I44 A;  5I41 B;  2ZHG A;  1EXI A;  3Q3D A;  3UCS A;  3Q5P A;  3Q5S A;  2VZ4 A;  1Q09 A;  3HH0 A;  3IAO A;  3D6Z A;  1Q07 A;  1R8D A;  1Q06 A;  3QAO A;  2JML A;  3GPV A;  5E01 A;  3D70 A;  3Q5R A;  1JBG A;  1Q0A A;  3Q2Y A;  1R8E A;  1EXJ A;  3GP4 A;  3Q1M A;  4J2N A;  4WLW A;  4R24 B;  1Q08 A; 
#chains in the Genus database with same CATH topology
 4R22 B;  3D6Y A;  1Q05 A;  3EZ2 A;  2IEF A;  5D8C A;  4WLS A;  2ZHH A;  5D90 A;  4R4E A;  3D71 A;  2DG6 A;  5I44 A;  5I41 B;  2KVV A;  2ZHG A;  4LHF A;  4DCZ A;  1EXI A;  3Q3D A;  3UCS A;  3Q5P A;  3EZF A;  2VZ4 A;  1Q09 A;  3Q5S A;  3HH0 A;  3IAO A;  3D6Z A;  1Q07 A;  1Y6U A;  1Q06 A;  3EZ9 A;  3EZ6 A;  2JML A;  3GPV A;  1LX8 A;  3QAO A;  1PM6 A;  5E01 A;  1R8D A;  3D70 A;  3Q5R A;  1JBG A;  1Q0A A;  3Q2Y A;  1R8E A;  1EXJ A;  2OG0 A;  3GP4 A;  1RH6 A;  3Q1M A;  4J2N A;  4WLW A;  4R24 B;  1Q08 A;  3EZ7 A; 
#chains in the Genus database with same CATH homology
 4R22 B;  3D6Y A;  1Q05 A;  3EZ2 A;  2IEF A;  5D8C A;  4WLS A;  2ZHH A;  5D90 A;  4R4E A;  3D71 A;  2DG6 A;  5I44 A;  5I41 B;  2KVV A;  2ZHG A;  4LHF A;  4DCZ A;  1EXI A;  3Q3D A;  3UCS A;  3Q5P A;  3EZF A;  2VZ4 A;  1Q09 A;  3Q5S A;  3HH0 A;  3IAO A;  3D6Z A;  1Q07 A;  1Y6U A;  1Q06 A;  3EZ9 A;  3EZ6 A;  2JML A;  3GPV A;  1LX8 A;  3QAO A;  1PM6 A;  5E01 A;  1R8D A;  3D70 A;  3Q5R A;  1JBG A;  1Q0A A;  3Q2Y A;  1R8E A;  1EXJ A;  2OG0 A;  3GP4 A;  1RH6 A;  3Q1M A;  4J2N A;  4WLW A;  4R24 B;  1Q08 A;  3EZ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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