2E2LA

Helicobacter pylori formamidase amif contains a fine-tuned cysteine-glutamate-lysine catalytic triad
Total Genus 97
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
322
structure length
317
Chain Sequence
GFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKWLSEEFLLDVPGKETELYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILKYRKLFPWNPIEPWYPGDLGMPVCEGPGGSKLAVCISHDGMIPELAREAAYKGCNVYIRISGYSTQVNDQWILTNRSNAWHNLMYTVSVNLAGYYFGEGQICNFDGTTLVQGHRNPWEIVTGEIYPKMADNARLSWGLENNIYNLGHRGYVAKPGGEHDAGLTYIKDLAAGKYKLPWEDHMKIKDGSIYGYPTTGGRFGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Formamidase
publication title Crystal structure of Helicobacter pylori formamidase AmiF reveals a cysteine-glutamate-lysine catalytic triad
pubmed doi rcsb
source organism Helicobacter pylori
total genus 97
structure length 317
sequence length 322
chains with identical sequence B, C, D, E, F
ec nomenclature ec 3.5.1.49: Formamidase.
pdb deposition date 2006-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 2e2lA01
2DYUA 3P8KA 5H8JA 4HGDA 3SZGA 2VHIA 4HG3A 1UF5A 2W1VA 3IVZA 1J31A 3N05A 5KHAA 3DLAA 4CYFA 2E2LA 4IZUA 3SEQA 3HKXA 3WUYA 2GGLA 4CYYA 1ERZA 1UF4A 4IZWA 5H8KA 3SDBA 2GGKA 1FO6A 3KI8A 2UXYA 4KZFA 4F4HA 1EMSA 2PLQA 4H5UA 1UF8A 4LF0A 4IZTA 4GYLA 4GYNA 2VHHA 2E2KA 1F89A 2DYVA 3SEZA 1UF7A 4IZSA 3KLCA 5H8IA 4HG5A 4IZVA 3ILVA 3IW3A 5H8LA 2E11A 4CYGA 5JQNA 3SYTA
chains in the Genus database with same CATH superfamily
2DYUA 3P8KA 5H8JA 4HGDA 3SZGA 2VHIA 4HG3A 1UF5A 2W1VA 3IVZA 1J31A 3N05A 5KHAA 3DLAA 4CYFA 2E2LA 4IZUA 3SEQA 3HKXA 3WUYA 2GGLA 4CYYA 1ERZA 1UF4A 4IZWA 5H8KA 3SDBA 2GGKA 1FO6A 3KI8A 2UXYA 4KZFA 4F4HA 1EMSA 2PLQA 4H5UA 1UF8A 4LF0A 4IZTA 4GYLA 4GYNA 2VHHA 2E2KA 1F89A 2DYVA 3SEZA 1UF7A 4IZSA 3KLCA 5H8IA 4HG5A 4IZVA 3ILVA 3IW3A 5H8LA 2E11A 4CYGA 5JQNA 3SYTA
chains in the Genus database with same CATH topology
2DYUA 3P8KA 5H8JA 4HGDA 3SZGA 2VHIA 4HG3A 1UF5A 2W1VA 3IVZA 1J31A 3N05A 5KHAA 3DLAA 4CYFA 2E2LA 4IZUA 3SEQA 3HKXA 3WUYA 2GGLA 4CYYA 1ERZA 1UF4A 4IZWA 5H8KA 3SDBA 2GGKA 1FO6A 3KI8A 2UXYA 4KZFA 4F4HA 1EMSA 2PLQA 4H5UA 1UF8A 4LF0A 4IZTA 4GYLA 4GYNA 2VHHA 2E2KA 1F89A 2DYVA 3SEZA 1UF7A 4IZSA 3KLCA 5H8IA 4HG5A 4IZVA 3ILVA 3IW3A 5H8LA 2E11A 4CYGA 5JQNA 3SYTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DYU A;  3P8K A;  5H8J A;  4HGD A;  3SZG A;  2VHI A;  4HG3 A;  1UF5 A;  2W1V A;  3IVZ A;  1J31 A;  3N05 A;  5KHA A;  3DLA A;  4CYF A;  2E2L A;  4IZU A;  3SEQ A;  3HKX A;  3WUY A;  2GGL A;  4CYY A;  1ERZ A;  1UF4 A;  4IZW A;  5H8K A;  3SDB A;  2GGK A;  1FO6 A;  3KI8 A;  2UXY A;  4KZF A;  4F4H A;  1EMS A;  2PLQ A;  4H5U A;  1UF8 A;  4LF0 A;  4IZT A;  4GYL A;  4GYN A;  2VHH A;  2E2K A;  1F89 A;  2DYV A;  3SEZ A;  1UF7 A;  4IZS A;  3KLC A;  5H8I A;  4HG5 A;  4IZV A;  3ILV A;  3IW3 A;  5H8L A;  2E11 A;  4CYG A;  5JQN A;  3SYT A; 
#chains in the Genus database with same CATH topology
 2DYU A;  3P8K A;  5H8J A;  4HGD A;  3SZG A;  2VHI A;  4HG3 A;  1UF5 A;  2W1V A;  3IVZ A;  1J31 A;  3N05 A;  5KHA A;  3DLA A;  4CYF A;  2E2L A;  4IZU A;  3SEQ A;  3HKX A;  3WUY A;  2GGL A;  4CYY A;  1ERZ A;  1UF4 A;  4IZW A;  5H8K A;  3SDB A;  2GGK A;  1FO6 A;  3KI8 A;  2UXY A;  4KZF A;  4F4H A;  1EMS A;  2PLQ A;  4H5U A;  1UF8 A;  4LF0 A;  4IZT A;  4GYL A;  4GYN A;  2VHH A;  2E2K A;  1F89 A;  2DYV A;  3SEZ A;  1UF7 A;  4IZS A;  3KLC A;  5H8I A;  4HG5 A;  4IZV A;  3ILV A;  3IW3 A;  5H8L A;  2E11 A;  4CYG A;  5JQN A;  3SYT A; 
#chains in the Genus database with same CATH homology
 2DYU A;  3P8K A;  5H8J A;  4HGD A;  3SZG A;  2VHI A;  4HG3 A;  1UF5 A;  2W1V A;  3IVZ A;  1J31 A;  3N05 A;  5KHA A;  3DLA A;  4CYF A;  2E2L A;  4IZU A;  3SEQ A;  3HKX A;  3WUY A;  2GGL A;  4CYY A;  1ERZ A;  1UF4 A;  4IZW A;  5H8K A;  3SDB A;  2GGK A;  1FO6 A;  3KI8 A;  2UXY A;  4KZF A;  4F4H A;  1EMS A;  2PLQ A;  4H5U A;  1UF8 A;  4LF0 A;  4IZT A;  4GYL A;  4GYN A;  2VHH A;  2E2K A;  1F89 A;  2DYV A;  3SEZ A;  1UF7 A;  4IZS A;  3KLC A;  5H8I A;  4HG5 A;  4IZV A;  3ILV A;  3IW3 A;  5H8L A;  2E11 A;  4CYG A;  5JQN A;  3SYT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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