2EF4A

Crystal structure of the arginase from thermus thermophilus
Total Genus 102
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
102
sequence length
290
structure length
282
Chain Sequence
ERVAVVGVPMDLGANRRGVDMGPSALRYARLLEQLEDLGYTVEDLGDVPVSLARLAYLEEIRAAALVLKERLAALPEGVFPIVLGGDHSLSMGSVAGAARGRRVGVVWVDAHADFNTPETSPSGNVHGMPLAVLSGLGHPRLTEVFRAVDPKDVVLVGVRSLDPGEKRLLKEAGVRVYTMHEVDRLGVARIAEEVLKHLQGLPLHVSLDADVLDPTLAPGVGTPVPGGLTYREAHLLMEILAESGRVQSLDLVEVNPILDERNRTAEMLVGLALSLLGKRIF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Arginase
publication title Crystal structure of the arginase from thermus thermophilus
rcsb
source organism Thermus thermophilus
total genus 102
structure length 282
sequence length 290
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2007-02-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 2ef4A00
3GN0A 4Q3PA 3LP7A 4GWCA 1WVBA 3LP4A 4GSVA 1TA1A 4IE1A 4Q3SA 1R1OA 2EIVA 1WOIA 5HJ9A 3F80A 1HQ5A 1P8MA 2PHOA 4IXUA 3E9BA 4IE3A 3RLAA 4Q3RC 1P8OA 1TBJA 3THEA 4IU5A 4Q40A 4RHIA 4IU0A 4CEVA 1P8SA 3M1RA 4Q41A 4MYLA 3SKKA 1HQGA 4I06A 1ZPEA 1T5GA 4IU1A 4Q42A 5RLAA 4HWWA 1HQHA 3E6KA 1RLAA 2CEVA 3E8ZA 3TF3A 4RHJA 3E6VA 4Q3UA 4GSZA 1T4SA 1T4RA 4Q3TA 3TH7A 4MXRA 3SJTA 1HQXA 4MYNA 1PQ3A 1T4TA 4MYKA 2ZAVA 3GMZA 4RHLA 1T5FA 2A0MA 4MYFA 3CEVA 1P8NA 1WVAA 1TBLA 1WOHA 1T4PA 4FCKA 3SL0A 2EF4A 2PHAA 3MFWA 3NIOA 4DZ4A 4HZEA 1D3VA 2AEBA 4RLAA 4RHKA 1ZPGA 5HJAA 4GWDA 1CEVA 4ITYA 3PZLA 4IE2A 2EF5A 4FCIA 4Q3VA 1XFKA 3SL1A 3MJLA 4HXQA 3THJA 1GQ6A 5CEVA 3E8QA 3KV2A 2PLLA 2RLAA 3THHA 4IXVA 4Q3RA 3MFVA 1P8QA 4G3HA 1P8PA 1P8RA 3MMRA 4RHQA 1WOGA 3NIQA 3NIPA 1TBHA 4GSMA 4RHMA 4IU4A 1GQ7A 1HQFA 3LHLA 4Q3QA 3DJ8A
chains in the Genus database with same CATH superfamily
5G0JA 2VQJA 3GN0A 4Q3PA 3C0YA 3LP7A 4GWCA 4LY1A 1WVBA 3F07A 3LP4A 4GSVA 1TA1A 4IE1A 5DC7A 4Q3SA 1R1OA 2EIVA 4BZ5A 1WOIA 5HJ9A 3F80A 1HQ5A 3C10A 5EEFA 1P8MA 2PHOA 5IX0A 1T67A 5G10A 4IXUA 5EEMA 5FUEA 2GH6A 5LI3A 3E9BA 4IE3A 3RLAA 5EENA 4Q3RC 1P8OA 3EZTA 4ZURA 3Q9CA 1TBJA 4QA7A 3THEA 4IU5A 4Q40A 4RHIA 4ZUQA 4BZ9A 4IU0A 4QA0A 1T69A 4ZUPA 2V5XA 4RN0A 5G12A 4CEVA 1P8SA 3MZ7A 5THSA 5G17A 2VQQA 3M1RA 4Q41A 5THVA 3MZ4A 4CQFA 3EZPA 4MYLA 5FCWA 3SKKA 2V5WA 1HQGA 4I06A 1ZPEA 1T5GA 4IU1A 4Q42A 4QA4A 5G1AA 4HWWA 5RLAA 1HQHA 3E6KA 1RLAA 4RN2A 2CEVA 3E8ZA 3TF3A 4A69A 3Q9EA 4BZ6A 5EFHA 4RHJA 3E6VA 5EFKB 4Q3UA 4BZ7A 4GSZA 5EF8A 1T4SA 5G0YA 1T4RA 4QA2A 4BZ8A 1ZZ1A 5G13A 4Q3TA 5G0XA 3TH7A 5D1BA 4MXRA 3SJTA 3ZNRA 4CBYA 5DC6A 5THUA 5A2SA 1HQXA 4MYNA 1PQ3A 3MENA 5G11A 1T4TA 5BWZA 3SFFA 4MYKA 2ZAVA 3GMZA 4QA1A 4RHLA 5DC5A 5EFJD 1T5FA 5EEIA 2A0MA 4MYFA 3CEVA 1P8NA 4QA5A 1C3PA 1WVAA 5EFGA 5EEKA 4CBTA 1TBLA 3Q9FA 1WOHA 1T4PA 4FCKA 4QA6A 3SL0A 2EF4A 5IWGA 2PHAA 3THHA 5EFBD 3MFWA 3MZ3A 3EW8A 3NIOA 3F0RA 5EFNA 4DZ4A 4HZEA 1D3VA 2AEBA 2VQWG 4RLAA 3ZNSA 4RHKA 1ZPGA 5HJAA 4GWDA 1CEVA 4QA3A 4BKXB 4ITYA 3PZLA 5D1CA 4IE2A 2EF5A 4FCIA 4Q3VA 1XFKA 5G0GA 1ZZ0A 4ZUOA 1C3SA 5G1CA 5G0IA 3SL1A 2VQOA 3MJLA 5ICNB 4HXQA 3THJA 1GQ6A 5CEVA 3E8QA 1W22A 3SFHA 3KV2A 2PLLA 3RQDA 2RLAA 5DC8A 4ZUNA 3Q9BA 1C3RA 4ZUMA 2VQVA 4IXVA 1ZZ3A 3MAXA 3MFVA 4Q3RA 1P8QA 5G0HA 4G3HA 4RN1A 3C0ZA 5JI5A 1VKGA 5G3WA 5THTA 1P8PA 5D1DA 1P8RA 3EWFA 3MMRA 1T64A 4RHQA 1WOGA 3NIQA 4LXZA 3NIPA 1TBHA 4GSMA 4RHMA 5EF7A 3F06A 3MZ6A 4IU4A 2VQMA 1GQ7A 1HQFA 3LHLA 4Q3QA 2VCGA 5G1BA 3DJ8A
chains in the Genus database with same CATH topology
3GN0A 4Q3PA 3LP7A 4GWCA 1WVBA 3LP4A 4GSVA 1TA1A 4IE1A 4Q3SA 1R1OA 2EIVA 1WOIA 5HJ9A 3F80A 1HQ5A 1P8MA 2PHOA 4IXUA 3E9BA 4IE3A 3RLAA 4Q3RC 1P8OA 1TBJA 3THEA 4IU5A 4Q40A 4RHIA 4IU0A 4CEVA 1P8SA 3M1RA 4Q41A 4MYLA 3SKKA 1HQGA 4I06A 1ZPEA 1T5GA 4IU1A 4Q42A 5RLAA 4HWWA 1HQHA 3E6KA 1RLAA 2CEVA 3E8ZA 3TF3A 4RHJA 3E6VA 4Q3UA 4GSZA 1T4SA 1T4RA 4Q3TA 3TH7A 4MXRA 3SJTA 1HQXA 4MYNA 1PQ3A 1T4TA 4MYKA 2ZAVA 3GMZA 4RHLA 1T5FA 2A0MA 4MYFA 3CEVA 1P8NA 1WVAA 1TBLA 1WOHA 1T4PA 4FCKA 3SL0A 2EF4A 2PHAA 3MFWA 3NIOA 4DZ4A 4HZEA 1D3VA 2AEBA 4RLAA 4RHKA 1ZPGA 5HJAA 4GWDA 1CEVA 4ITYA 3PZLA 4IE2A 2EF5A 4FCIA 4Q3VA 1XFKA 3SL1A 3MJLA 4HXQA 3THJA 1GQ6A 5CEVA 3E8QA 3KV2A 2PLLA 2RLAA 3THHA 4IXVA 4Q3RA 3MFVA 1P8QA 4G3HA 1P8PA 1P8RA 3MMRA 4RHQA 1WOGA 3NIQA 3NIPA 1TBHA 4GSMA 4RHMA 4IU4A 1GQ7A 1HQFA 3LHLA 4Q3QA 3DJ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GN0 A;  4Q3P A;  3LP7 A;  4GWC A;  1WVB A;  3LP4 A;  4GSV A;  1TA1 A;  4IE1 A;  4Q3S A;  1R1O A;  2EIV A;  1WOI A;  5HJ9 A;  3F80 A;  1HQ5 A;  1P8M A;  2PHO A;  4IXU A;  3E9B A;  4IE3 A;  3RLA A;  4Q3R C;  1P8O A;  1TBJ A;  3THE A;  4IU5 A;  4Q40 A;  4RHI A;  4IU0 A;  4CEV A;  1P8S A;  3M1R A;  4Q41 A;  4MYL A;  3SKK A;  1HQG A;  4I06 A;  1ZPE A;  1T5G A;  4IU1 A;  4Q42 A;  5RLA A;  4HWW A;  1HQH A;  3E6K A;  1RLA A;  2CEV A;  3E8Z A;  3TF3 A;  4RHJ A;  3E6V A;  4Q3U A;  4GSZ A;  1T4S A;  1T4R A;  4Q3T A;  3TH7 A;  4MXR A;  3SJT A;  1HQX A;  4MYN A;  1PQ3 A;  1T4T A;  4MYK A;  2ZAV A;  3GMZ A;  4RHL A;  1T5F A;  2A0M A;  4MYF A;  3CEV A;  1P8N A;  1WVA A;  1TBL A;  1WOH A;  1T4P A;  4FCK A;  3SL0 A;  2EF4 A;  2PHA A;  3MFW A;  3NIO A;  4DZ4 A;  4HZE A;  1D3V A;  2AEB A;  4RLA A;  4RHK A;  1ZPG A;  5HJA A;  4GWD A;  1CEV A;  4ITY A;  3PZL A;  4IE2 A;  2EF5 A;  4FCI A;  4Q3V A;  1XFK A;  3SL1 A;  3MJL A;  4HXQ A;  3THJ A;  1GQ6 A;  5CEV A;  3E8Q A;  3KV2 A;  2PLL A;  2RLA A;  3THH A;  4IXV A;  4Q3R A;  3MFV A;  1P8Q A;  4G3H A;  1P8P A;  1P8R A;  3MMR A;  4RHQ A;  1WOG A;  3NIQ A;  3NIP A;  1TBH A;  4GSM A;  4RHM A;  4IU4 A;  1GQ7 A;  1HQF A;  3LHL A;  4Q3Q A;  3DJ8 A; 
#chains in the Genus database with same CATH topology
 5G0J A;  2VQJ A;  3GN0 A;  4Q3P A;  3C0Y A;  3LP7 A;  4GWC A;  4LY1 A;  1WVB A;  3F07 A;  3LP4 A;  4GSV A;  1TA1 A;  4IE1 A;  5DC7 A;  4Q3S A;  1R1O A;  2EIV A;  4BZ5 A;  1WOI A;  5HJ9 A;  3F80 A;  1HQ5 A;  3C10 A;  5EEF A;  1P8M A;  2PHO A;  5IX0 A;  1T67 A;  5G10 A;  4IXU A;  5EEM A;  5FUE A;  2GH6 A;  5LI3 A;  3E9B A;  4IE3 A;  3RLA A;  5EEN A;  4Q3R C;  1P8O A;  3EZT A;  4ZUR A;  3Q9C A;  1TBJ A;  4QA7 A;  3THE A;  4IU5 A;  4Q40 A;  4RHI A;  4ZUQ A;  4BZ9 A;  4IU0 A;  4QA0 A;  1T69 A;  4ZUP A;  2V5X A;  4RN0 A;  5G12 A;  4CEV A;  1P8S A;  3MZ7 A;  5THS A;  5G17 A;  2VQQ A;  3M1R A;  4Q41 A;  5THV A;  3MZ4 A;  4CQF A;  3EZP A;  4MYL A;  5FCW A;  3SKK A;  2V5W A;  1HQG A;  4I06 A;  1ZPE A;  1T5G A;  4IU1 A;  4Q42 A;  4QA4 A;  5G1A A;  4HWW A;  5RLA A;  1HQH A;  3E6K A;  1RLA A;  4RN2 A;  2CEV A;  3E8Z A;  3TF3 A;  4A69 A;  3Q9E A;  4BZ6 A;  5EFH A;  4RHJ A;  3E6V A;  5EFK B;  4Q3U A;  4BZ7 A;  4GSZ A;  5EF8 A;  1T4S A;  5G0Y A;  1T4R A;  4QA2 A;  4BZ8 A;  1ZZ1 A;  5G13 A;  4Q3T A;  5G0X A;  3TH7 A;  5D1B A;  4MXR A;  3SJT A;  3ZNR A;  4CBY A;  5DC6 A;  5THU A;  5A2S A;  1HQX A;  4MYN A;  1PQ3 A;  3MEN A;  5G11 A;  1T4T A;  5BWZ A;  3SFF A;  4MYK A;  2ZAV A;  3GMZ A;  4QA1 A;  4RHL A;  5DC5 A;  5EFJ D;  1T5F A;  5EEI A;  2A0M A;  4MYF A;  3CEV A;  1P8N A;  4QA5 A;  1C3P A;  1WVA A;  5EFG A;  5EEK A;  4CBT A;  1TBL A;  3Q9F A;  1WOH A;  1T4P A;  4FCK A;  4QA6 A;  3SL0 A;  2EF4 A;  5IWG A;  2PHA A;  3THH A;  5EFB D;  3MFW A;  3MZ3 A;  3EW8 A;  3NIO A;  3F0R A;  5EFN A;  4DZ4 A;  4HZE A;  1D3V A;  2AEB A;  2VQW G;  4RLA A;  3ZNS A;  4RHK A;  1ZPG A;  5HJA A;  4GWD A;  1CEV A;  4QA3 A;  4BKX B;  4ITY A;  3PZL A;  5D1C A;  4IE2 A;  2EF5 A;  4FCI A;  4Q3V A;  1XFK A;  5G0G A;  1ZZ0 A;  4ZUO A;  1C3S A;  5G1C A;  5G0I A;  3SL1 A;  2VQO A;  3MJL A;  5ICN B;  4HXQ A;  3THJ A;  1GQ6 A;  5CEV A;  3E8Q A;  1W22 A;  3SFH A;  3KV2 A;  2PLL A;  3RQD A;  2RLA A;  5DC8 A;  4ZUN A;  3Q9B A;  1C3R A;  4ZUM A;  2VQV A;  4IXV A;  1ZZ3 A;  3MAX A;  3MFV A;  4Q3R A;  1P8Q A;  5G0H A;  4G3H A;  4RN1 A;  3C0Z A;  5JI5 A;  1VKG A;  5G3W A;  5THT A;  1P8P A;  5D1D A;  1P8R A;  3EWF A;  3MMR A;  1T64 A;  4RHQ A;  1WOG A;  3NIQ A;  4LXZ A;  3NIP A;  1TBH A;  4GSM A;  4RHM A;  5EF7 A;  3F06 A;  3MZ6 A;  4IU4 A;  2VQM A;  1GQ7 A;  1HQF A;  3LHL A;  4Q3Q A;  2VCG A;  5G1B A;  3DJ8 A; 
#chains in the Genus database with same CATH homology
 3GN0 A;  4Q3P A;  3LP7 A;  4GWC A;  1WVB A;  3LP4 A;  4GSV A;  1TA1 A;  4IE1 A;  4Q3S A;  1R1O A;  2EIV A;  1WOI A;  5HJ9 A;  3F80 A;  1HQ5 A;  1P8M A;  2PHO A;  4IXU A;  3E9B A;  4IE3 A;  3RLA A;  4Q3R C;  1P8O A;  1TBJ A;  3THE A;  4IU5 A;  4Q40 A;  4RHI A;  4IU0 A;  4CEV A;  1P8S A;  3M1R A;  4Q41 A;  4MYL A;  3SKK A;  1HQG A;  4I06 A;  1ZPE A;  1T5G A;  4IU1 A;  4Q42 A;  5RLA A;  4HWW A;  1HQH A;  3E6K A;  1RLA A;  2CEV A;  3E8Z A;  3TF3 A;  4RHJ A;  3E6V A;  4Q3U A;  4GSZ A;  1T4S A;  1T4R A;  4Q3T A;  3TH7 A;  4MXR A;  3SJT A;  1HQX A;  4MYN A;  1PQ3 A;  1T4T A;  4MYK A;  2ZAV A;  3GMZ A;  4RHL A;  1T5F A;  2A0M A;  4MYF A;  3CEV A;  1P8N A;  1WVA A;  1TBL A;  1WOH A;  1T4P A;  4FCK A;  3SL0 A;  2EF4 A;  2PHA A;  3MFW A;  3NIO A;  4DZ4 A;  4HZE A;  1D3V A;  2AEB A;  4RLA A;  4RHK A;  1ZPG A;  5HJA A;  4GWD A;  1CEV A;  4ITY A;  3PZL A;  4IE2 A;  2EF5 A;  4FCI A;  4Q3V A;  1XFK A;  3SL1 A;  3MJL A;  4HXQ A;  3THJ A;  1GQ6 A;  5CEV A;  3E8Q A;  3KV2 A;  2PLL A;  2RLA A;  3THH A;  4IXV A;  4Q3R A;  3MFV A;  1P8Q A;  4G3H A;  1P8P A;  1P8R A;  3MMR A;  4RHQ A;  1WOG A;  3NIQ A;  3NIP A;  1TBH A;  4GSM A;  4RHM A;  4IU4 A;  1GQ7 A;  1HQF A;  3LHL A;  4Q3Q A;  3DJ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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