2EF5A

Crystal structure of the arginase from thermus thermophilus
Total Genus 95
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
290
structure length
273
Chain Sequence
ERVAVVGVPMDLGVDMGPSALRYARLLEQLEDLGYTVEDLGDVPVSLAYLEEIRAAALVLKERLAALPEGVFPIVLGGDHSLSMGSVAGAARGRRVGVVWVDAHADFNTPETSSGNVHGMPLAVLSGLGHPRLTEVFRAVDPKDVVLVGVRSLDPGEKRLLKEAGVRVYTMHEVDRLGVARIAEEVLKHLQGLPLHVSLDADVLDPTLAPGVGTPVPGGLTYREAHLLMEILAESGRVQSLDLVEVNPILDERNRTAEMLVGLALSLLGKRIF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Arginase
publication title Crystal structure of the arginase from thermus thermophilus
rcsb
source organism Thermus thermophilus
total genus 95
structure length 273
sequence length 290
chains with identical sequence B, D, E, F, G
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2007-02-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 2ef5A00
4HWWA 1P8NA 4Q41A 1HQ5A 3SL0A 2PLLA 1T5GA 1P8SA 1R1OA 2PHAA 4Q42A 4MYNA 1ZPEA 4RHLA 1WOIA 1P8PA 4FCIA 4HZEA 2CEVA 1PQ3A 1HQFA 3GMZA 4GSMA 1T4RA 3MFWA 1CEVA 1HQGA 3E6VA 3TH7A 2A0MA 5HJAA 4MYKA 1T5FA 1TBHA 4MYLA 3F80A 3NIPA 4IE3A 3THEA 4IE2A 3E9BA 3LP7A 3NIOA 3THHA 3E6KA 3MJLA 1P8QA 3SKKA 1HQXA 1T4PA 1WOHA 3MFVA 3SJTA 3M1RA 2AEBA 1TBJA 4ITYA 4Q40A 1GQ7A 4RLAA 4GSVA 4RHJA 4Q3TA 4CEVA 3CEVA 1XFKA 3E8ZA 1WOGA 4IU0A 5HJ9A 2RLAA 3NIQA 1RLAA 4RHQA 1P8RA 4Q3PA 3TF3A 1TA1A 4Q3QA 4Q3RC 1WVAA 3DJ8A 4RHIA 3MMRA 1D3VA 4I06A 4Q3RA 4Q3VA 1T4SA 3GN0A 3E8QA 4HXQA 4IXUA 5RLAA 1P8OA 2EIVA 4IE1A 3LHLA 4RHKA 4G3HA 3RLAA 3KV2A 4RHMA 3THJA 2EF5A 1HQHA 2EF4A 2ZAVA 1ZPGA 1TBLA 4MXRA 4MYFA 1GQ6A 4GWCA 4IU4A 3PZLA 1WVBA 4FCKA 5CEVA 3LP4A 4IU5A 4DZ4A 2PHOA 4IU1A 4Q3UA 4GSZA 1P8MA 4GWDA 4Q3SA 3SL1A 4IXVA 1T4TA
chains in the Genus database with same CATH superfamily
5EEIA 5G0HA 4ZURA 4HWWA 5IWGA 1P8NA 2VQOA 4Q41A 1HQ5A 3SL0A 2PLLA 5DC7A 3C0YA 1T5GA 4QA6A 1P8SA 1R1OA 2PHAA 4BZ9A 4Q42A 4MYNA 1W22A 1ZPEA 4RHLA 3MZ4A 5ICNB 1T67A 1VKGA 1WOIA 1C3PA 1T69A 1P8PA 4FCIA 4HZEA 2CEVA 1PQ3A 1HQFA 3EZPA 5DC6A 4ZUPA 3MENA 3GMZA 4GSMA 2VCGA 3F07A 1T4RA 2GH6A 3MFWA 4QA1A 4RN0A 4BKXB 5EFGA 1CEVA 1HQGA 4BZ8A 3E6VA 4RN2A 3TH7A 1ZZ1A 5THTA 5G0XA 3RQDA 2A0MA 2V5WA 3MZ7A 2VQQA 2VQJA 5EEMA 5JI5A 5HJAA 5FUEA 4MYKA 1T5FA 5D1BA 1TBHA 4MYLA 3ZNRA 3F80A 3SFHA 5EF8A 3NIPA 4IE3A 2V5XA 4ZUNA 3F06A 3THEA 4IE2A 4QA2A 3E9BA 3LP7A 3NIOA 4CBTA 3MZ3A 3THHA 3E6KA 3MJLA 5EEFA 3SFFA 1P8QA 3SKKA 5IX0A 5A2SA 5BWZA 1HQXA 1T4PA 1WOHA 3C0ZA 3MFVA 3SJTA 3M1RA 2AEBA 4LY1A 1TBJA 4A69A 4ITYA 3EWFA 4Q40A 5G3WA 3C10A 1GQ7A 4RLAA 4GSVA 4RHJA 5G0JA 4Q3TA 5EEKA 5FCWA 4QA4A 3Q9EA 3EZTA 3ZNSA 3CEVA 4CEVA 3Q9CA 1XFKA 4CQFA 1C3RA 3E8ZA 5D1CA 5EFHA 3MAXA 5G1BA 5EFNA 5G0IA 4QA7A 1WOGA 5G13A 5LI3A 4IU0A 5G12A 5HJ9A 2RLAA 3NIQA 5DC5A 3F0RA 4ZUOA 4ZUQA 5G1CA 1RLAA 4RHQA 1C3SA 1P8RA 4RN1A 4Q3PA 5G1AA 5EENA 1TA1A 4Q3QA 4Q3RC 5DC8A 1WVAA 3TF3A 3MZ6A 3DJ8A 4RHIA 3MMRA 1D3VA 4I06A 5EFJD 4BZ6A 4QA3A 4Q3RA 4Q3VA 5THUA 1T4SA 3GN0A 3E8QA 4HXQA 4IXUA 5G0GA 5RLAA 4BZ5A 1P8OA 2EIVA 2VQWG 4IE1A 3LHLA 5EFKB 3Q9FA 4RHKA 4G3HA 3RLAA 3KV2A 4RHMA 3THJA 2EF5A 1HQHA 2EF4A 2ZAVA 1ZPGA 1TBLA 5THSA 4MXRA 2VQMA 4QA5A 5EF7A 4MYFA 1GQ6A 4GWCA 4IU4A 3PZLA 1WVBA 4CBYA 4FCKA 1T64A 3EW8A 5D1DA 3Q9BA 4LXZA 4BZ7A 4QA0A 5G11A 5CEVA 3LP4A 4IU5A 5G0YA 4DZ4A 2PHOA 1ZZ3A 5EFBD 5G10A 4IU1A 4Q3UA 4GSZA 4ZUMA 1P8MA 4GWDA 4Q3SA 5THVA 3SL1A 4IXVA 2VQVA 1T4TA 5G17A 1ZZ0A
chains in the Genus database with same CATH topology
4HWWA 1P8NA 4Q41A 1HQ5A 3SL0A 2PLLA 1T5GA 1P8SA 1R1OA 2PHAA 4Q42A 4MYNA 1ZPEA 4RHLA 1WOIA 1P8PA 4FCIA 4HZEA 2CEVA 1PQ3A 1HQFA 3GMZA 4GSMA 1T4RA 3MFWA 1CEVA 1HQGA 3E6VA 3TH7A 2A0MA 5HJAA 4MYKA 1T5FA 1TBHA 4MYLA 3F80A 3NIPA 4IE3A 3THEA 4IE2A 3E9BA 3LP7A 3NIOA 3THHA 3E6KA 3MJLA 1P8QA 3SKKA 1HQXA 1T4PA 1WOHA 3MFVA 3SJTA 3M1RA 2AEBA 1TBJA 4ITYA 4Q40A 1GQ7A 4RLAA 4GSVA 4RHJA 4Q3TA 4CEVA 3CEVA 1XFKA 3E8ZA 1WOGA 4IU0A 5HJ9A 2RLAA 3NIQA 1RLAA 4RHQA 1P8RA 4Q3PA 3TF3A 1TA1A 4Q3QA 4Q3RC 1WVAA 3DJ8A 4RHIA 3MMRA 1D3VA 4I06A 4Q3RA 4Q3VA 1T4SA 3GN0A 3E8QA 4HXQA 4IXUA 5RLAA 1P8OA 2EIVA 4IE1A 3LHLA 4RHKA 4G3HA 3RLAA 3KV2A 4RHMA 3THJA 2EF5A 1HQHA 2EF4A 2ZAVA 1ZPGA 1TBLA 4MXRA 4MYFA 1GQ6A 4GWCA 4IU4A 3PZLA 1WVBA 4FCKA 5CEVA 3LP4A 4IU5A 4DZ4A 2PHOA 4IU1A 4Q3UA 4GSZA 1P8MA 4GWDA 4Q3SA 3SL1A 4IXVA 1T4TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HWW A;  1P8N A;  4Q41 A;  1HQ5 A;  3SL0 A;  2PLL A;  1T5G A;  1P8S A;  1R1O A;  2PHA A;  4Q42 A;  4MYN A;  1ZPE A;  4RHL A;  1WOI A;  1P8P A;  4FCI A;  4HZE A;  2CEV A;  1PQ3 A;  1HQF A;  3GMZ A;  4GSM A;  1T4R A;  3MFW A;  1CEV A;  1HQG A;  3E6V A;  3TH7 A;  2A0M A;  5HJA A;  4MYK A;  1T5F A;  1TBH A;  4MYL A;  3F80 A;  3NIP A;  4IE3 A;  3THE A;  4IE2 A;  3E9B A;  3LP7 A;  3NIO A;  3THH A;  3E6K A;  3MJL A;  1P8Q A;  3SKK A;  1HQX A;  1T4P A;  1WOH A;  3MFV A;  3SJT A;  3M1R A;  2AEB A;  1TBJ A;  4ITY A;  4Q40 A;  1GQ7 A;  4RLA A;  4GSV A;  4RHJ A;  4Q3T A;  4CEV A;  3CEV A;  1XFK A;  3E8Z A;  1WOG A;  4IU0 A;  5HJ9 A;  2RLA A;  3NIQ A;  1RLA A;  4RHQ A;  1P8R A;  4Q3P A;  3TF3 A;  1TA1 A;  4Q3Q A;  4Q3R C;  1WVA A;  3DJ8 A;  4RHI A;  3MMR A;  1D3V A;  4I06 A;  4Q3R A;  4Q3V A;  1T4S A;  3GN0 A;  3E8Q A;  4HXQ A;  4IXU A;  5RLA A;  1P8O A;  2EIV A;  4IE1 A;  3LHL A;  4RHK A;  4G3H A;  3RLA A;  3KV2 A;  4RHM A;  3THJ A;  2EF5 A;  1HQH A;  2EF4 A;  2ZAV A;  1ZPG A;  1TBL A;  4MXR A;  4MYF A;  1GQ6 A;  4GWC A;  4IU4 A;  3PZL A;  1WVB A;  4FCK A;  5CEV A;  3LP4 A;  4IU5 A;  4DZ4 A;  2PHO A;  4IU1 A;  4Q3U A;  4GSZ A;  1P8M A;  4GWD A;  4Q3S A;  3SL1 A;  4IXV A;  1T4T A; 
#chains in the Genus database with same CATH topology
 5EEI A;  5G0H A;  4ZUR A;  4HWW A;  5IWG A;  1P8N A;  2VQO A;  4Q41 A;  1HQ5 A;  3SL0 A;  2PLL A;  5DC7 A;  3C0Y A;  1T5G A;  4QA6 A;  1P8S A;  1R1O A;  2PHA A;  4BZ9 A;  4Q42 A;  4MYN A;  1W22 A;  1ZPE A;  4RHL A;  3MZ4 A;  5ICN B;  1T67 A;  1VKG A;  1WOI A;  1C3P A;  1T69 A;  1P8P A;  4FCI A;  4HZE A;  2CEV A;  1PQ3 A;  1HQF A;  3EZP A;  5DC6 A;  4ZUP A;  3MEN A;  3GMZ A;  4GSM A;  2VCG A;  3F07 A;  1T4R A;  2GH6 A;  3MFW A;  4QA1 A;  4RN0 A;  4BKX B;  5EFG A;  1CEV A;  1HQG A;  4BZ8 A;  3E6V A;  4RN2 A;  3TH7 A;  1ZZ1 A;  5THT A;  5G0X A;  3RQD A;  2A0M A;  2V5W A;  3MZ7 A;  2VQQ A;  2VQJ A;  5EEM A;  5JI5 A;  5HJA A;  5FUE A;  4MYK A;  1T5F A;  5D1B A;  1TBH A;  4MYL A;  3ZNR A;  3F80 A;  3SFH A;  5EF8 A;  3NIP A;  4IE3 A;  2V5X A;  4ZUN A;  3F06 A;  3THE A;  4IE2 A;  4QA2 A;  3E9B A;  3LP7 A;  3NIO A;  4CBT A;  3MZ3 A;  3THH A;  3E6K A;  3MJL A;  5EEF A;  3SFF A;  1P8Q A;  3SKK A;  5IX0 A;  5A2S A;  5BWZ A;  1HQX A;  1T4P A;  1WOH A;  3C0Z A;  3MFV A;  3SJT A;  3M1R A;  2AEB A;  4LY1 A;  1TBJ A;  4A69 A;  4ITY A;  3EWF A;  4Q40 A;  5G3W A;  3C10 A;  1GQ7 A;  4RLA A;  4GSV A;  4RHJ A;  5G0J A;  4Q3T A;  5EEK A;  5FCW A;  4QA4 A;  3Q9E A;  3EZT A;  3ZNS A;  3CEV A;  4CEV A;  3Q9C A;  1XFK A;  4CQF A;  1C3R A;  3E8Z A;  5D1C A;  5EFH A;  3MAX A;  5G1B A;  5EFN A;  5G0I A;  4QA7 A;  1WOG A;  5G13 A;  5LI3 A;  4IU0 A;  5G12 A;  5HJ9 A;  2RLA A;  3NIQ A;  5DC5 A;  3F0R A;  4ZUO A;  4ZUQ A;  5G1C A;  1RLA A;  4RHQ A;  1C3S A;  1P8R A;  4RN1 A;  4Q3P A;  5G1A A;  5EEN A;  1TA1 A;  4Q3Q A;  4Q3R C;  5DC8 A;  1WVA A;  3TF3 A;  3MZ6 A;  3DJ8 A;  4RHI A;  3MMR A;  1D3V A;  4I06 A;  5EFJ D;  4BZ6 A;  4QA3 A;  4Q3R A;  4Q3V A;  5THU A;  1T4S A;  3GN0 A;  3E8Q A;  4HXQ A;  4IXU A;  5G0G A;  5RLA A;  4BZ5 A;  1P8O A;  2EIV A;  2VQW G;  4IE1 A;  3LHL A;  5EFK B;  3Q9F A;  4RHK A;  4G3H A;  3RLA A;  3KV2 A;  4RHM A;  3THJ A;  2EF5 A;  1HQH A;  2EF4 A;  2ZAV A;  1ZPG A;  1TBL A;  5THS A;  4MXR A;  2VQM A;  4QA5 A;  5EF7 A;  4MYF A;  1GQ6 A;  4GWC A;  4IU4 A;  3PZL A;  1WVB A;  4CBY A;  4FCK A;  1T64 A;  3EW8 A;  5D1D A;  3Q9B A;  4LXZ A;  4BZ7 A;  4QA0 A;  5G11 A;  5CEV A;  3LP4 A;  4IU5 A;  5G0Y A;  4DZ4 A;  2PHO A;  1ZZ3 A;  5EFB D;  5G10 A;  4IU1 A;  4Q3U A;  4GSZ A;  4ZUM A;  1P8M A;  4GWD A;  4Q3S A;  5THV A;  3SL1 A;  4IXV A;  2VQV A;  1T4T A;  5G17 A;  1ZZ0 A; 
#chains in the Genus database with same CATH homology
 4HWW A;  1P8N A;  4Q41 A;  1HQ5 A;  3SL0 A;  2PLL A;  1T5G A;  1P8S A;  1R1O A;  2PHA A;  4Q42 A;  4MYN A;  1ZPE A;  4RHL A;  1WOI A;  1P8P A;  4FCI A;  4HZE A;  2CEV A;  1PQ3 A;  1HQF A;  3GMZ A;  4GSM A;  1T4R A;  3MFW A;  1CEV A;  1HQG A;  3E6V A;  3TH7 A;  2A0M A;  5HJA A;  4MYK A;  1T5F A;  1TBH A;  4MYL A;  3F80 A;  3NIP A;  4IE3 A;  3THE A;  4IE2 A;  3E9B A;  3LP7 A;  3NIO A;  3THH A;  3E6K A;  3MJL A;  1P8Q A;  3SKK A;  1HQX A;  1T4P A;  1WOH A;  3MFV A;  3SJT A;  3M1R A;  2AEB A;  1TBJ A;  4ITY A;  4Q40 A;  1GQ7 A;  4RLA A;  4GSV A;  4RHJ A;  4Q3T A;  4CEV A;  3CEV A;  1XFK A;  3E8Z A;  1WOG A;  4IU0 A;  5HJ9 A;  2RLA A;  3NIQ A;  1RLA A;  4RHQ A;  1P8R A;  4Q3P A;  3TF3 A;  1TA1 A;  4Q3Q A;  4Q3R C;  1WVA A;  3DJ8 A;  4RHI A;  3MMR A;  1D3V A;  4I06 A;  4Q3R A;  4Q3V A;  1T4S A;  3GN0 A;  3E8Q A;  4HXQ A;  4IXU A;  5RLA A;  1P8O A;  2EIV A;  4IE1 A;  3LHL A;  4RHK A;  4G3H A;  3RLA A;  3KV2 A;  4RHM A;  3THJ A;  2EF5 A;  1HQH A;  2EF4 A;  2ZAV A;  1ZPG A;  1TBL A;  4MXR A;  4MYF A;  1GQ6 A;  4GWC A;  4IU4 A;  3PZL A;  1WVB A;  4FCK A;  5CEV A;  3LP4 A;  4IU5 A;  4DZ4 A;  2PHO A;  4IU1 A;  4Q3U A;  4GSZ A;  1P8M A;  4GWD A;  4Q3S A;  3SL1 A;  4IXV A;  1T4T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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