2EH4A

Mutant t146m structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPMSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords diphthine synthase
publication title Mutant T146M structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
total genus 81
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2eh4A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2eh4A01
1V9AA 2EMRA 5HW4A 2P5CA 2PCAA 2HUVA 2PB6A 2PCIA 2QBUA 2EK7A 1VE2A 2EGSA 2OWKA 2P6IA 2ELDA 3NEIA 2ELEA 2E08A 2E8SA 2HUXA 2EMUA 2DV7A 2EKAA 2E4RA 2E8QA 3NDCA 2HR8A 2EH4A 1PJSA 2DSIA 2EGLA 2DSGA 2PCHA 3HH1A 2ENIA 2HUTA 2E15A 2DV4A 2ZVBA 2Z6RA 1PJTA 2EJKA 2DXWA 2EHCA 2EK2A 2BB3A 2DSHA 2DXXA 2OWUA 1S4DA 3ND1A 2P2XA 1VCEA 2EH2A 1WYZA 2DEKA 2OWFA 2ED3A 2P6DA 2P6KA 2EK4A 3NUTA 1WDEA 3I4TA 2E16A 2EK3A 2HUQA 2DXVA 2E7RA 2ZVCA 2PCGA 2EN5A 2E0KA 1WNGA 2CBFA 2P9DA 2OWGA 2E0NA 2PCKA 2EJZA 3KWPA 2E8HA 2EL2A 2PCMA 2NPNA 2OWVA 2DV3A 2P5FA 2E17A 1VA0A 2EHLA 2EL1A 2EEQA 2EH5A 3FQ6A 2ED5A 2EL3A 2PB5A 2E07A 1CBFA 3FFYA 2EGBA 2EJJA 2DV5A 2YBOA 2PB4A 2E4NA 2EL0A 4E16A 1PJQA 2E8RA 1VHVA 2P6LA 2YBQA
chains in the Genus database with same CATH superfamily
1V9AA 2EMRA 3UTDA 5HW4A 2P5CA 2PCAA 3KEFA 2HUVA 2PB6A 2PCIA 2QBUA 3ZGLA 2EK7A 1VE2A 2EGSA 3T0FA 2OWKA 2P6IA 4EB3A 2ELDA 3NEIA 2ELEA 4MUXA 2E08A 2E8SA 2HUXA 2EMUA 2DV7A 2EKAA 2E4RA 2E8QA 3UTCA 3NDCA 2HR8A 2EH4A 1PJSA 2DSIA 2EGLA 3T0GA 2DSGA 2PCHA 3HH1A 3TIXB 2ENIA 2HUTA 2E15A 2DV4A 2ZVBA 3URKA 2Z6RA 3UV3A 1PJTA 2EJKA 2DXWA 2EHCA 2EK2A 2BB3A 2DSHA 3UV7A 3ZGNA 4N7BA 2DXXA 2OWUA 1S4DA 3ND1A 2P2XA 3UV6A 1VCEA 2KYYA 3DNFA 2EH2A 1WYZA 2DEKA 4MUYA 2OWFA 2ED3A 2P6DA 2P6KA 2EK4A 3NUTA 1WDEA 3SZOA 3I4TA 2E16A 3SZUA 2EK3A 2HUQA 3KELA 2DXVA 2E7RA 4H4DA 2ZVCA 4MV5A 2PCGA 2EN5A 2E0KA 1WNGA 2CBFA 4MV0A 2P9DA 2OWGA 2E0NA 2PCKA 2EJZA 3KWPA 2E8HA 2EL2A 2PCMA 2NPNA 2OWVA 4H4EA 2DV3A 2P5FA 2E17A 1VA0A 2EHLA 2EL1A 3KE9A 2EEQA 2EH5A 3FQ6A 2ED5A 2EL3A 2PB5A 2E07A 3UWMA 1CBFA 3FFYA 2EGBA 3KEMA 3KE8A 2EJJA 3LMMA 2DV5A 3F7TA 2YBOA 2PB4A 4H4CA 2E4NA 2EL0A 4E16A 1PJQA 2E8RA 1VHVA 2P6LA 2YBQA 3SZLA
chains in the Genus database with same CATH topology
1V9AA 2EMRA 3UTDA 5HW4A 2P5CA 2PCAA 3KEFA 2HUVA 2PB6A 2PCIA 2QBUA 3ZGLA 2EK7A 1VE2A 2EGSA 3T0FA 2OWKA 2P6IA 4EB3A 2ELDA 3NEIA 2ELEA 4MUXA 2E08A 2E8SA 2HUXA 2EMUA 2DV7A 2EKAA 2E4RA 2E8QA 3UTCA 3NDCA 2HR8A 2EH4A 1PJSA 2DSIA 2EGLA 3T0GA 2DSGA 2PCHA 3HH1A 3TIXB 2ENIA 2HUTA 2E15A 2DV4A 2ZVBA 3URKA 2Z6RA 3UV3A 1PJTA 2EJKA 2DXWA 2EHCA 2EK2A 2BB3A 2DSHA 3UV7A 3ZGNA 4N7BA 2DXXA 2OWUA 1S4DA 3ND1A 2P2XA 3UV6A 1VCEA 2KYYA 3DNFA 2EH2A 1WYZA 2DEKA 4MUYA 2OWFA 2ED3A 2P6DA 2P6KA 2EK4A 3NUTA 1WDEA 3SZOA 3I4TA 2E16A 3SZUA 2EK3A 2HUQA 3KELA 2DXVA 2E7RA 4H4DA 2ZVCA 4MV5A 2PCGA 2EN5A 2E0KA 1WNGA 2CBFA 4MV0A 2P9DA 2OWGA 2E0NA 2PCKA 2EJZA 3KWPA 2E8HA 2EL2A 2PCMA 2NPNA 2OWVA 4H4EA 2DV3A 2P5FA 2E17A 1VA0A 2EHLA 2EL1A 3KE9A 2EEQA 2EH5A 3FQ6A 2ED5A 2EL3A 2PB5A 2E07A 3UWMA 1CBFA 3FFYA 2EGBA 3KEMA 3KE8A 2EJJA 3LMMA 2DV5A 3F7TA 2YBOA 2PB4A 4H4CA 2E4NA 2EL0A 4E16A 1PJQA 2E8RA 1VHVA 2P6LA 2YBQA 3SZLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V9A A;  2EMR A;  5HW4 A;  2P5C A;  2PCA A;  2HUV A;  2PB6 A;  2PCI A;  2QBU A;  2EK7 A;  1VE2 A;  2EGS A;  2OWK A;  2P6I A;  2ELD A;  3NEI A;  2ELE A;  2E08 A;  2E8S A;  2HUX A;  2EMU A;  2DV7 A;  2EKA A;  2E4R A;  2E8Q A;  3NDC A;  2HR8 A;  2EH4 A;  1PJS A;  2DSI A;  2EGL A;  2DSG A;  2PCH A;  3HH1 A;  2ENI A;  2HUT A;  2E15 A;  2DV4 A;  2ZVB A;  2Z6R A;  1PJT A;  2EJK A;  2DXW A;  2EHC A;  2EK2 A;  2BB3 A;  2DSH A;  2DXX A;  2OWU A;  1S4D A;  3ND1 A;  2P2X A;  1VCE A;  2EH2 A;  1WYZ A;  2DEK A;  2OWF A;  2ED3 A;  2P6D A;  2P6K A;  2EK4 A;  3NUT A;  1WDE A;  3I4T A;  2E16 A;  2EK3 A;  2HUQ A;  2DXV A;  2E7R A;  2ZVC A;  2PCG A;  2EN5 A;  2E0K A;  1WNG A;  2CBF A;  2P9D A;  2OWG A;  2E0N A;  2PCK A;  2EJZ A;  3KWP A;  2E8H A;  2EL2 A;  2PCM A;  2NPN A;  2OWV A;  2DV3 A;  2P5F A;  2E17 A;  1VA0 A;  2EHL A;  2EL1 A;  2EEQ A;  2EH5 A;  3FQ6 A;  2ED5 A;  2EL3 A;  2PB5 A;  2E07 A;  1CBF A;  3FFY A;  2EGB A;  2EJJ A;  2DV5 A;  2YBO A;  2PB4 A;  2E4N A;  2EL0 A;  4E16 A;  1PJQ A;  2E8R A;  1VHV A;  2P6L A;  2YBQ A; 
#chains in the Genus database with same CATH topology
 1V9A A;  2EMR A;  3UTD A;  5HW4 A;  2P5C A;  2PCA A;  3KEF A;  2HUV A;  2PB6 A;  2PCI A;  2QBU A;  3ZGL A;  2EK7 A;  1VE2 A;  2EGS A;  3T0F A;  2OWK A;  2P6I A;  4EB3 A;  2ELD A;  3NEI A;  2ELE A;  4MUX A;  2E08 A;  2E8S A;  2HUX A;  2EMU A;  2DV7 A;  2EKA A;  2E4R A;  2E8Q A;  3UTC A;  3NDC A;  2HR8 A;  2EH4 A;  1PJS A;  2DSI A;  2EGL A;  3T0G A;  2DSG A;  2PCH A;  3HH1 A;  3TIX B;  2ENI A;  2HUT A;  2E15 A;  2DV4 A;  2ZVB A;  3URK A;  2Z6R A;  3UV3 A;  1PJT A;  2EJK A;  2DXW A;  2EHC A;  2EK2 A;  2BB3 A;  2DSH A;  3UV7 A;  3ZGN A;  4N7B A;  2DXX A;  2OWU A;  1S4D A;  3ND1 A;  2P2X A;  3UV6 A;  1VCE A;  2KYY A;  3DNF A;  2EH2 A;  1WYZ A;  2DEK A;  4MUY A;  2OWF A;  2ED3 A;  2P6D A;  2P6K A;  2EK4 A;  3NUT A;  1WDE A;  3SZO A;  3I4T A;  2E16 A;  3SZU A;  2EK3 A;  2HUQ A;  3KEL A;  2DXV A;  2E7R A;  4H4D A;  2ZVC A;  4MV5 A;  2PCG A;  2EN5 A;  2E0K A;  1WNG A;  2CBF A;  4MV0 A;  2P9D A;  2OWG A;  2E0N A;  2PCK A;  2EJZ A;  3KWP A;  2E8H A;  2EL2 A;  2PCM A;  2NPN A;  2OWV A;  4H4E A;  2DV3 A;  2P5F A;  2E17 A;  1VA0 A;  2EHL A;  2EL1 A;  3KE9 A;  2EEQ A;  2EH5 A;  3FQ6 A;  2ED5 A;  2EL3 A;  2PB5 A;  2E07 A;  3UWM A;  1CBF A;  3FFY A;  2EGB A;  3KEM A;  3KE8 A;  2EJJ A;  3LMM A;  2DV5 A;  3F7T A;  2YBO A;  2PB4 A;  4H4C A;  2E4N A;  2EL0 A;  4E16 A;  1PJQ A;  2E8R A;  1VHV A;  2P6L A;  2YBQ A;  3SZL A; 
#chains in the Genus database with same CATH homology
 1V9A A;  2EMR A;  3UTD A;  5HW4 A;  2P5C A;  2PCA A;  3KEF A;  2HUV A;  2PB6 A;  2PCI A;  2QBU A;  3ZGL A;  2EK7 A;  1VE2 A;  2EGS A;  3T0F A;  2OWK A;  2P6I A;  4EB3 A;  2ELD A;  3NEI A;  2ELE A;  4MUX A;  2E08 A;  2E8S A;  2HUX A;  2EMU A;  2DV7 A;  2EKA A;  2E4R A;  2E8Q A;  3UTC A;  3NDC A;  2HR8 A;  2EH4 A;  1PJS A;  2DSI A;  2EGL A;  3T0G A;  2DSG A;  2PCH A;  3HH1 A;  3TIX B;  2ENI A;  2HUT A;  2E15 A;  2DV4 A;  2ZVB A;  3URK A;  2Z6R A;  3UV3 A;  1PJT A;  2EJK A;  2DXW A;  2EHC A;  2EK2 A;  2BB3 A;  2DSH A;  3UV7 A;  3ZGN A;  4N7B A;  2DXX A;  2OWU A;  1S4D A;  3ND1 A;  2P2X A;  3UV6 A;  1VCE A;  2KYY A;  3DNF A;  2EH2 A;  1WYZ A;  2DEK A;  4MUY A;  2OWF A;  2ED3 A;  2P6D A;  2P6K A;  2EK4 A;  3NUT A;  1WDE A;  3SZO A;  3I4T A;  2E16 A;  3SZU A;  2EK3 A;  2HUQ A;  3KEL A;  2DXV A;  2E7R A;  4H4D A;  2ZVC A;  4MV5 A;  2PCG A;  2EN5 A;  2E0K A;  1WNG A;  2CBF A;  4MV0 A;  2P9D A;  2OWG A;  2E0N A;  2PCK A;  2EJZ A;  3KWP A;  2E8H A;  2EL2 A;  2PCM A;  2NPN A;  2OWV A;  4H4E A;  2DV3 A;  2P5F A;  2E17 A;  1VA0 A;  2EHL A;  2EL1 A;  3KE9 A;  2EEQ A;  2EH5 A;  3FQ6 A;  2ED5 A;  2EL3 A;  2PB5 A;  2E07 A;  3UWM A;  1CBF A;  3FFY A;  2EGB A;  3KEM A;  3KE8 A;  2EJJ A;  3LMM A;  2DV5 A;  3F7T A;  2YBO A;  2PB4 A;  4H4C A;  2E4N A;  2EL0 A;  4E16 A;  1PJQ A;  2E8R A;  1VHV A;  2P6L A;  2YBQ A;  3SZL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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