2EQZA

Solution structure of the first hmg-box domain from high mobility group protein b3
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
86
structure length
86
Chain Sequence
GSSGSSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords High mobility group protein B3
publication title Solution structure of the first HMG-box domain from high mobility group protein B3
rcsb
source organism Homo sapiens
total genus 24
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2007-03-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09011 HMG_box_2 HMG-box domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.30.10 Mainly Alpha Orthogonal Bundle DNA Binding (I), subunit A High mobility group box domain 2eqzA00
1V63A 3TQ6A 2EQZA 2RTUA 2LHJA 3TMMA 1AABA 4NODA 2D7LA 1WGFA 1V64A 1WXLA 1J3DA 1I11A 4S2QD 1HSNA 2LY4A 1HSMA 2YUKA 2CO9A 1K99A 1HMEA 2E6OA 1WZ6A 2CTOA 1GT0D 1J46A 3FGHA 2GZKA 4A3NA 3F27D 1LWMA 1NHNA 2YRQA 1HRYA 1HMAA 2YULA 3U2BC 1CG7A 1J3XA 1HMFA 1J3CA 3NM9A 2YQIA 2LE4A 2CRJA 1L8YA 2CS1A 1L8ZA 1HRZA 1QRVA 4NNUA 2LEFA 2HDZA 4Y60C 1J47A 4EUWA 1CKTA 4QR9A 1J5NA 1O4XB 1E7JA 1NHMA
chains in the Genus database with same CATH superfamily
1V63A 3TQ6A 2VSFA 2EQZA 2RTUA 3AO0B 2LHJA 3TMMA 4A15A 1AABA 4NODA 2D7LA 1WGFA 1V64A 1WXLA 3ABOB 1J3DA 1I11A 4S2QD 1HSNA 3ABSB 2LY4A 1HSMA 2YUKA 2CO9A 1K99A 1HMEA 2E6OA 1WZ6A 2CTOA 3ABRB 1GT0D 1J46A 5H8WA 3FGHA 2GZKA 4A3NA 3F27D 1LWMA 1NHNA 2YRQA 1HRYA 1HMAA 2YULA 4KQEA 3U2BC 1CG7A 1J3XA 1J3CA 3NM9A 1HMFA 2YQIA 2LE4A 2CRJA 1L8YA 2CS1A 3ANYB 1L8ZA 1HRZA 1QRVA 4NNUA 2LEFA 2HDZA 4Y60C 1J47A 4EUWA 1CKTA 4QR9A 1J5NA 1O4XB 1E7JA 1NHMA
chains in the Genus database with same CATH topology
1V63A 3TQ6A 2EQZA 2RTUA 2LHJA 3TMMA 1AABA 4NODA 2D7LA 1WGFA 1V64A 1WXLA 1J3DA 1I11A 4S2QD 1HSNA 2LY4A 1HSMA 2YUKA 2CO9A 1K99A 1HMEA 2E6OA 1WZ6A 2CTOA 1GT0D 1J46A 3FGHA 2GZKA 4A3NA 3F27D 1LWMA 1NHNA 2YRQA 1HRYA 1HMAA 2YULA 3U2BC 1CG7A 1J3XA 1HMFA 1J3CA 3NM9A 2YQIA 2LE4A 2CRJA 1L8YA 2CS1A 1L8ZA 1HRZA 1QRVA 4NNUA 2LEFA 2HDZA 4Y60C 1J47A 4EUWA 1CKTA 4QR9A 1J5NA 1O4XB 1E7JA 1NHMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V63 A;  3TQ6 A;  2EQZ A;  2RTU A;  2LHJ A;  3TMM A;  1AAB A;  4NOD A;  2D7L A;  1WGF A;  1V64 A;  1WXL A;  1J3D A;  1I11 A;  4S2Q D;  1HSN A;  2LY4 A;  1HSM A;  2YUK A;  2CO9 A;  1K99 A;  1HME A;  2E6O A;  1WZ6 A;  2CTO A;  1GT0 D;  1J46 A;  3FGH A;  2GZK A;  4A3N A;  3F27 D;  1LWM A;  1NHN A;  2YRQ A;  1HRY A;  1HMA A;  2YUL A;  3U2B C;  1CG7 A;  1J3X A;  1HMF A;  1J3C A;  3NM9 A;  2YQI A;  2LE4 A;  2CRJ A;  1L8Y A;  2CS1 A;  1L8Z A;  1HRZ A;  1QRV A;  4NNU A;  2LEF A;  2HDZ A;  4Y60 C;  1J47 A;  4EUW A;  1CKT A;  4QR9 A;  1J5N A;  1O4X B;  1E7J A;  1NHM A; 
#chains in the Genus database with same CATH topology
 1V63 A;  3TQ6 A;  2VSF A;  2EQZ A;  2RTU A;  3AO0 B;  2LHJ A;  3TMM A;  4A15 A;  1AAB A;  4NOD A;  2D7L A;  1WGF A;  1V64 A;  1WXL A;  3ABO B;  1J3D A;  1I11 A;  4S2Q D;  1HSN A;  3ABS B;  2LY4 A;  1HSM A;  2YUK A;  2CO9 A;  1K99 A;  1HME A;  2E6O A;  1WZ6 A;  2CTO A;  3ABR B;  1GT0 D;  1J46 A;  5H8W A;  3FGH A;  2GZK A;  4A3N A;  3F27 D;  1LWM A;  1NHN A;  2YRQ A;  1HRY A;  1HMA A;  2YUL A;  4KQE A;  3U2B C;  1CG7 A;  1J3X A;  1J3C A;  3NM9 A;  1HMF A;  2YQI A;  2LE4 A;  2CRJ A;  1L8Y A;  2CS1 A;  3ANY B;  1L8Z A;  1HRZ A;  1QRV A;  4NNU A;  2LEF A;  2HDZ A;  4Y60 C;  1J47 A;  4EUW A;  1CKT A;  4QR9 A;  1J5N A;  1O4X B;  1E7J A;  1NHM A; 
#chains in the Genus database with same CATH homology
 1V63 A;  3TQ6 A;  2EQZ A;  2RTU A;  2LHJ A;  3TMM A;  1AAB A;  4NOD A;  2D7L A;  1WGF A;  1V64 A;  1WXL A;  1J3D A;  1I11 A;  4S2Q D;  1HSN A;  2LY4 A;  1HSM A;  2YUK A;  2CO9 A;  1K99 A;  1HME A;  2E6O A;  1WZ6 A;  2CTO A;  1GT0 D;  1J46 A;  3FGH A;  2GZK A;  4A3N A;  3F27 D;  1LWM A;  1NHN A;  2YRQ A;  1HRY A;  1HMA A;  2YUL A;  3U2B C;  1CG7 A;  1J3X A;  1HMF A;  1J3C A;  3NM9 A;  2YQI A;  2LE4 A;  2CRJ A;  1L8Y A;  2CS1 A;  1L8Z A;  1HRZ A;  1QRV A;  4NNU A;  2LEF A;  2HDZ A;  4Y60 C;  1J47 A;  4EUW A;  1CKT A;  4QR9 A;  1J5N A;  1O4X B;  1E7J A;  1NHM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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