2F1DA

X-ray structure of imidazoleglycerol-phosphate dehydratase
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
183
structure length
183
Chain Sequence
GRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDVHVRATGDVHIDDHHTNEDIALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGENSHHIIEATFKAFARALRQATETDPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Imidazoleglycerol-phosphate dehydratase 1
publication title Structure and mechanism of imidazoleglycerol-phosphate dehydratase.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 54
structure length 183
sequence length 183
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
ec nomenclature ec 4.2.1.19: Imidazoleglycerol-phosphate dehydratase.
pdb deposition date 2005-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00475 IGPD Imidazoleglycerol-phosphate dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2f1dA01
3.30.230.40 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 Imidazole glycerol phosphate dehydratase; domain 1 2f1dA02
4GQUA 2AE8A 4MU1A 2F1DA 4QNKA 4QNJA 4MU4A 5EL9A 1RHYA 4LOMA 4MU0A 4MU3A 4LPFA 5DNLA 5ELWA 5EKWA 5DNXA
chains in the Genus database with same CATH superfamily
4JI7E 4GQUA 1MX0A 1S4EA 4LCFA 3L7ZA 2JT2A 3CDIA 1N34E 4PRXA 4DR3E 2X36A 5IWAI 1PVGA 4FWHA 3GMEA 4DV1E 4JI5I 4FWDA 3M7NG 4JI6E 3QT6A 1ZM4A 1K47A 2UXDE 4B3RE 4DV2E 1MU5A 4HY1A 4HACB 4ZVIA 2BV3A 4HACA 1Z5BA 3KRNA 4DPUA 2HFSA 2NN6C 4B3SE 4BA1B 3ZZTA 4NBQA 4LF6E 1ZM3A 2VQFE 5EKWA 4BA1A 1Y6ZA 4GKJE 5C0XA 1OYSA 3M6AA 4BA2B 4IFDC 1R6LA 3DD6A 1RREA 3J7AG 2BA1G 1IBMI 1KVKA 1VISA 4I3HA 3P3GA 1Z0WA 2UUBI 4X65I 1N36E 4LFAE 2C39B 4QNKA 2O1UA 3WU5A 4DPTA 2C39A 2LJPA 4DU7A 4DV3E 1Z0EA 2GO3A 4JYAI 2X7IA 3HJCA 1FNMA 5DNLA 2V2VA 5L3JA 4ISAA 4JI7I 4JI4E 4LF5I 4DR6E 1D6TA 5FWKA 3B78A 4DV6E 4IFDE 4LF9E 1N34I 4N3OA 1Z59A 4DR3I 4HYMA 4JV5E 1Z0GA 1KKHA 5FLXQ 4AIDA 2VESA 4JI6I 1UDQA 1B63A 1H7SA 4LFCE 4B3RI 4IS9A 4AIMA 2UUCE 4Z7YA 2V2QA 4DR1E 3J81Q 2NN6B 1UDNA 2NN6F 5DNXA 2NN6A 4DV7E 4B3SI 4LF6I 2E1RA 1Y4SA 2VQFI 2PO1B 2Z5CB 4B3ME 4IFDB 5JEAC 4FW6A 4IFDF 2Z5CA 1MG7A 1N32E 2AE8A 3P76A 3QT7A 4Z7CA 1P42A 3LNUA 5DRPA 1R6MA 4DV0E 4WUCA 1I94E 4FW9A 1XNQE 2IESA 3J80Q 1OJ4A 3GLLA 3QT5A 4DR2E 2UUAE 4DV3I 1E3PA 4DV4E 5K36B 5K36F 5A2QC 5K36A 4JI4I 4DR6I 4LCHA 5JEAE 3HKMA 4DV6I 4IZJB 4JI8E 4LF9I 2PNZB 4IZJA 1S16A 3M85G 1Z0CA 2PNZA 2WNRB 4JV5I 2NN6D 2WNRA 4OX9E 4LFCI 1PKPA 4IFDD 3WU4A 4DUZE 1ELOA 2UUCI 1ZXMA 1EA6A 5DRQA 1A6FA 3U1YA 1J5EE 1VI7A 3PYDA 4X66E 4DV7I 3GONA 3K17A 5JEAB 4DR5E 4JI2E 5JEAF 4QNJA 1HNZE 4B3MI 3GCMA 4MU3A 3H1CA 2HK3A 1Z5AA 5K36D 5IT9C 2IOQA 2BM1A 4IZJD 4LOMA 4WUDA 4USKA 4DR2I 2JEAB 4AM3A 4UTGA 2UUAI 5DROA 2ZBKB 2JEAA 4DR7E 4BA2A 1Y60A 4U3DA 4JI0E 2EFGA 4WUBA 5BR8E 5LMNE 4X64E 1XMOE 1N0UA 2BA0G 2DEIA 4OX9I 5JEAD 3PYFA 2UXCE 5LL6R 1XXEA 2V8PA 3K1JA 4DUZI 2JE6B 1HR0E 1OYRA 2HK2A 2JE6A 3PS3A 4MYTA 1KTVA 1J5EI 4X62E 2UXBE 4JG4A 4X66I 4DV1I 1PIEA 4DR5I 2OI2A 4JI2I 4KHPE 1HNXE 1HNZI 4B3TE 2PO2B 2UXDI 4DV2I 3OTOE 3PS1A 2VQEE 1UDOA 4DUYE 4DPYA 4JI1E 4XTJA 4DV5E 4DR4E 3WU3A 3PRYA 4IZKB 1H74A 1B62A 3ZZ0A 1Y5YA 4IZKA 4FW4A 4MU4A 1XHKA 3T1YE 5GMDA 2PO1A 4PRVA 4GKJI 2O1VA 4IFDA 4DR7I 4LF4E 1IBLE 2CVEA 4OKGA 3T1HE 4JI0I 5BR8I 5LMNI 4HXZA 1XMOI 1N36I 1EI1A 1H72C 4LFAI 2C37B 4JI5E 1IBKE 3M7ND 2C37A 2CZ9A 2UU9E 2HFUA 3PYGA 4FWGA 3UHMA 5GMEA 5FLXC 1ZXNA 3NZKA 2UXCI 2V34A 1Z0BA 2C38B 3K85A 1HR0I 3F0NA 2C38A 2E5LE 3U1KA 3H4LA 4FW7A 4LF7E 4X62I 2Q2EB 1KIJA 3J81C 2F4VE 2UXBI 3V5RA 1RHYA 2Z5BB 4KHPI 1HNXI 1Z0TA 1NHIA 2PO0B 2ZITA 2BR2B 2Z5BA 5C0XC 4K0KE 2F1DA 3OTOI 2VQEI 2PO0A 4DU8A 2BA1D 4NXME 3ZKDA 1HK7A 1ZM9A 5LMUE 2GO4A 4KQVA 4DR1I 1NZ0A 1UEKA 3D4JA 1NHJA 1N0VC 4DPXA 4LCGA 4X65E 3J80C 3T1YI 1NHHA 3LPSA 5JEAA 4OO1C 2WP8B 4JYAE 2GS8A 1N32I 4PU9A 2WP8A 4ED4A 4LF4I 1IBLI 4DV0I 2A2CA 4URLA 3T1HI 4LF5E 3WU6A 1I94I 1U2RA 3V2UC 5C0XE 1XNQI 4FN5A 1XMQE 1Z5CA 4JI3E 4YY3E 2O1WA 2ZM6E 1FI4A 2CG9A 1QZRA 2O3ZA 1Y4UA 1IBKI 2UU9I 4DV4I 1N33E 1XNRE 2PNMA 4OO1E 2XEXA 5DRRA 2JEBB 4M1KA 3Q1QA 2E5LI 4NXNE 4JI8I 2JEBA 4GKKE 2Z5EA 4LF7I 3ZM7A 4YHHE 2F4VI 4OZEA 5C0XB 1OYPA 5C0XF 4K0KI 2BM0A 1HNWE 1USVA 3Q6NA 4NXMI 1DARA 2IERA 3P06A 5EL9A 3LTOA 5LMUI 3PYEA 2WW4A 4LF8E 2IOPA 1UDSA 1H7UA 3HULA 4OO1B 4OO1F 4OO1A 2PO2A 2NN6E 5K36C 4FW5A 3P3CA 1FJGE 4AQYE 3JAMQ 1XMQI 4JI3I 4UT4A 4YY3I 1USUA 4LFBE 3M85D 2HKEA 4MU0A 1Z0VA 2ZM6I 1FKAE 3QT8A 4MDTA 4MU1A 5A2QQ 3PS2A 3ZKBA 1H73A 1RR9A 2HHHE 5C0XD 1N33I 4U3BA 4RPFA 2VF3A 1YH8A 1XNRI 4X64I 4NXNI 4GKKI 5K36E 5IWAE 2GQ0A 4FW3A 3B82A 3CWVA 4YHHI 2NPFA 4P52A 4OO1D 2R42A 1HNWI 4MQYA 2J7KA 2DEJA 1E3HA 5ELWA 2J65A 3P3EA 3CDJA 1YHCA 2HKJA 3ZZUA 2V2ZA 4EMDA 4LF8I 3JAMC 3J7AM 2O1TA 1FWKA 4B3TI 1ZM2A 5IT9Q 4DUYI 2BR2A 1IBME 1BKNA 4P7AA 2AJ4A 4JI1I 4DV5I 1FJGI 4AQYI 4DR4I 4LPFA 4USMA 4DXLA 4R1FA 2UUBE 4MYUA 4LFBI 3B4TA 3B8HA 4J3DA 2CGEA 2A2DA 1WUUA 2BA0D 2PNLA 4DPWA 1FWLA 3Q6MA 2R3VA 2HHHI 3L7ZB
chains in the Genus database with same CATH topology
4GQUA 2AE8A 4MU1A 2F1DA 4QNKA 4QNJA 4MU4A 5EL9A 1RHYA 4LOMA 4MU0A 4MU3A 4LPFA 5DNLA 5ELWA 5EKWA 5DNXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GQU A;  2AE8 A;  4MU1 A;  2F1D A;  4QNK A;  4QNJ A;  4MU4 A;  5EL9 A;  1RHY A;  4LOM A;  4MU0 A;  4MU3 A;  4LPF A;  5DNL A;  5ELW A;  5EKW A;  5DNX A; 
#chains in the Genus database with same CATH topology
 4JI7 E;  4GQU A;  1MX0 A;  1S4E A;  4LCF A;  3L7Z A;  2JT2 A;  3CDI A;  1N34 E;  4PRX A;  4DR3 E;  2X36 A;  5IWA I;  1PVG A;  4FWH A;  3GME A;  4DV1 E;  4JI5 I;  4FWD A;  3M7N G;  4JI6 E;  3QT6 A;  1ZM4 A;  1K47 A;  2UXD E;  4B3R E;  4DV2 E;  1MU5 A;  4HY1 A;  4HAC B;  4ZVI A;  2BV3 A;  4HAC A;  1Z5B A;  3KRN A;  4DPU A;  2HFS A;  2NN6 C;  4B3S E;  4BA1 B;  3ZZT A;  4NBQ A;  4LF6 E;  1ZM3 A;  2VQF E;  5EKW A;  4BA1 A;  1Y6Z A;  4GKJ E;  5C0X A;  1OYS A;  3M6A A;  4BA2 B;  4IFD C;  1R6L A;  3DD6 A;  1RRE A;  3J7A G;  2BA1 G;  1IBM I;  1KVK A;  1VIS A;  4I3H A;  3P3G A;  1Z0W A;  2UUB I;  4X65 I;  1N36 E;  4LFA E;  2C39 B;  4QNK A;  2O1U A;  3WU5 A;  4DPT A;  2C39 A;  2LJP A;  4DU7 A;  4DV3 E;  1Z0E A;  2GO3 A;  4JYA I;  2X7I A;  3HJC A;  1FNM A;  5DNL A;  2V2V A;  5L3J A;  4ISA A;  4JI7 I;  4JI4 E;  4LF5 I;  4DR6 E;  1D6T A;  5FWK A;  3B78 A;  4DV6 E;  4IFD E;  4LF9 E;  1N34 I;  4N3O A;  1Z59 A;  4DR3 I;  4HYM A;  4JV5 E;  1Z0G A;  1KKH A;  5FLX Q;  4AID A;  2VES A;  4JI6 I;  1UDQ A;  1B63 A;  1H7S A;  4LFC E;  4B3R I;  4IS9 A;  4AIM A;  2UUC E;  4Z7Y A;  2V2Q A;  4DR1 E;  3J81 Q;  2NN6 B;  1UDN A;  2NN6 F;  5DNX A;  2NN6 A;  4DV7 E;  4B3S I;  4LF6 I;  2E1R A;  1Y4S A;  2VQF I;  2PO1 B;  2Z5C B;  4B3M E;  4IFD B;  5JEA C;  4FW6 A;  4IFD F;  2Z5C A;  1MG7 A;  1N32 E;  2AE8 A;  3P76 A;  3QT7 A;  4Z7C A;  1P42 A;  3LNU A;  5DRP A;  1R6M A;  4DV0 E;  4WUC A;  1I94 E;  4FW9 A;  1XNQ E;  2IES A;  3J80 Q;  1OJ4 A;  3GLL A;  3QT5 A;  4DR2 E;  2UUA E;  4DV3 I;  1E3P A;  4DV4 E;  5K36 B;  5K36 F;  5A2Q C;  5K36 A;  4JI4 I;  4DR6 I;  4LCH A;  5JEA E;  3HKM A;  4DV6 I;  4IZJ B;  4JI8 E;  4LF9 I;  2PNZ B;  4IZJ A;  1S16 A;  3M85 G;  1Z0C A;  2PNZ A;  2WNR B;  4JV5 I;  2NN6 D;  2WNR A;  4OX9 E;  4LFC I;  1PKP A;  4IFD D;  3WU4 A;  4DUZ E;  1ELO A;  2UUC I;  1ZXM A;  1EA6 A;  5DRQ A;  1A6F A;  3U1Y A;  1J5E E;  1VI7 A;  3PYD A;  4X66 E;  4DV7 I;  3GON A;  3K17 A;  5JEA B;  4DR5 E;  4JI2 E;  5JEA F;  4QNJ A;  1HNZ E;  4B3M I;  3GCM A;  4MU3 A;  3H1C A;  2HK3 A;  1Z5A A;  5K36 D;  5IT9 C;  2IOQ A;  2BM1 A;  4IZJ D;  4LOM A;  4WUD A;  4USK A;  4DR2 I;  2JEA B;  4AM3 A;  4UTG A;  2UUA I;  5DRO A;  2ZBK B;  2JEA A;  4DR7 E;  4BA2 A;  1Y60 A;  4U3D A;  4JI0 E;  2EFG A;  4WUB A;  5BR8 E;  5LMN E;  4X64 E;  1XMO E;  1N0U A;  2BA0 G;  2DEI A;  4OX9 I;  5JEA D;  3PYF A;  2UXC E;  5LL6 R;  1XXE A;  2V8P A;  3K1J A;  4DUZ I;  2JE6 B;  1HR0 E;  1OYR A;  2HK2 A;  2JE6 A;  3PS3 A;  4MYT A;  1KTV A;  1J5E I;  4X62 E;  2UXB E;  4JG4 A;  4X66 I;  4DV1 I;  1PIE A;  4DR5 I;  2OI2 A;  4JI2 I;  4KHP E;  1HNX E;  1HNZ I;  4B3T E;  2PO2 B;  2UXD I;  4DV2 I;  3OTO E;  3PS1 A;  2VQE E;  1UDO A;  4DUY E;  4DPY A;  4JI1 E;  4XTJ A;  4DV5 E;  4DR4 E;  3WU3 A;  3PRY A;  4IZK B;  1H74 A;  1B62 A;  3ZZ0 A;  1Y5Y A;  4IZK A;  4FW4 A;  4MU4 A;  1XHK A;  3T1Y E;  5GMD A;  2PO1 A;  4PRV A;  4GKJ I;  2O1V A;  4IFD A;  4DR7 I;  4LF4 E;  1IBL E;  2CVE A;  4OKG A;  3T1H E;  4JI0 I;  5BR8 I;  5LMN I;  4HXZ A;  1XMO I;  1N36 I;  1EI1 A;  1H72 C;  4LFA I;  2C37 B;  4JI5 E;  1IBK E;  3M7N D;  2C37 A;  2CZ9 A;  2UU9 E;  2HFU A;  3PYG A;  4FWG A;  3UHM A;  5GME A;  5FLX C;  1ZXN A;  3NZK A;  2UXC I;  2V34 A;  1Z0B A;  2C38 B;  3K85 A;  1HR0 I;  3F0N A;  2C38 A;  2E5L E;  3U1K A;  3H4L A;  4FW7 A;  4LF7 E;  4X62 I;  2Q2E B;  1KIJ A;  3J81 C;  2F4V E;  2UXB I;  3V5R A;  1RHY A;  2Z5B B;  4KHP I;  1HNX I;  1Z0T A;  1NHI A;  2PO0 B;  2ZIT A;  2BR2 B;  2Z5B A;  5C0X C;  4K0K E;  2F1D A;  3OTO I;  2VQE I;  2PO0 A;  4DU8 A;  2BA1 D;  4NXM E;  3ZKD A;  1HK7 A;  1ZM9 A;  5LMU E;  2GO4 A;  4KQV A;  4DR1 I;  1NZ0 A;  1UEK A;  3D4J A;  1NHJ A;  1N0V C;  4DPX A;  4LCG A;  4X65 E;  3J80 C;  3T1Y I;  1NHH A;  3LPS A;  5JEA A;  4OO1 C;  2WP8 B;  4JYA E;  2GS8 A;  1N32 I;  4PU9 A;  2WP8 A;  4ED4 A;  4LF4 I;  1IBL I;  4DV0 I;  2A2C A;  4URL A;  3T1H I;  4LF5 E;  3WU6 A;  1I94 I;  1U2R A;  3V2U C;  5C0X E;  1XNQ I;  4FN5 A;  1XMQ E;  1Z5C A;  4JI3 E;  4YY3 E;  2O1W A;  2ZM6 E;  1FI4 A;  2CG9 A;  1QZR A;  2O3Z A;  1Y4U A;  1IBK I;  2UU9 I;  4DV4 I;  1N33 E;  1XNR E;  2PNM A;  4OO1 E;  2XEX A;  5DRR A;  2JEB B;  4M1K A;  3Q1Q A;  2E5L I;  4NXN E;  4JI8 I;  2JEB A;  4GKK E;  2Z5E A;  4LF7 I;  3ZM7 A;  4YHH E;  2F4V I;  4OZE A;  5C0X B;  1OYP A;  5C0X F;  4K0K I;  2BM0 A;  1HNW E;  1USV A;  3Q6N A;  4NXM I;  1DAR A;  2IER A;  3P06 A;  5EL9 A;  3LTO A;  5LMU I;  3PYE A;  2WW4 A;  4LF8 E;  2IOP A;  1UDS A;  1H7U A;  3HUL A;  4OO1 B;  4OO1 F;  4OO1 A;  2PO2 A;  2NN6 E;  5K36 C;  4FW5 A;  3P3C A;  1FJG E;  4AQY E;  3JAM Q;  1XMQ I;  4JI3 I;  4UT4 A;  4YY3 I;  1USU A;  4LFB E;  3M85 D;  2HKE A;  4MU0 A;  1Z0V A;  2ZM6 I;  1FKA E;  3QT8 A;  4MDT A;  4MU1 A;  5A2Q Q;  3PS2 A;  3ZKB A;  1H73 A;  1RR9 A;  2HHH E;  5C0X D;  1N33 I;  4U3B A;  4RPF A;  2VF3 A;  1YH8 A;  1XNR I;  4X64 I;  4NXN I;  4GKK I;  5K36 E;  5IWA E;  2GQ0 A;  4FW3 A;  3B82 A;  3CWV A;  4YHH I;  2NPF A;  4P52 A;  4OO1 D;  2R42 A;  1HNW I;  4MQY A;  2J7K A;  2DEJ A;  1E3H A;  5ELW A;  2J65 A;  3P3E A;  3CDJ A;  1YHC A;  2HKJ A;  3ZZU A;  2V2Z A;  4EMD A;  4LF8 I;  3JAM C;  3J7A M;  2O1T A;  1FWK A;  4B3T I;  1ZM2 A;  5IT9 Q;  4DUY I;  2BR2 A;  1IBM E;  1BKN A;  4P7A A;  2AJ4 A;  4JI1 I;  4DV5 I;  1FJG I;  4AQY I;  4DR4 I;  4LPF A;  4USM A;  4DXL A;  4R1F A;  2UUB E;  4MYU A;  4LFB I;  3B4T A;  3B8H A;  4J3D A;  2CGE A;  2A2D A;  1WUU A;  2BA0 D;  2PNL A;  4DPW A;  1FWL A;  3Q6M A;  2R3V A;  2HHH I;  3L7Z B; 
#chains in the Genus database with same CATH homology
 4GQU A;  2AE8 A;  4MU1 A;  2F1D A;  4QNK A;  4QNJ A;  4MU4 A;  5EL9 A;  1RHY A;  4LOM A;  4MU0 A;  4MU3 A;  4LPF A;  5DNL A;  5ELW A;  5EKW A;  5DNX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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