2FICA

The crystal structure of the bar domain from human bin1/amphiphysin ii and its implications for molecular recognition
Total Genus 87
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
198
structure length
191
Chain Sequence
EQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Endocytosis/exocytosis, membrane protein
molecule keywords Myc box-dependent-interacting protein 1
publication title The Crystal Structure of the BAR Domain from Human Bin1/Amphiphysin II and Its Implications for Molecular Recognition
pubmed doi rcsb
source organism Homo sapiens
total genus 87
structure length 191
sequence length 198
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-12-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03114 BAR BAR domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 2ficA00
3ABHA 1WDZA 4WPCA 2ELBA 1I49A 4NQIA 2Q12A 4DCNC 4DYLA 3G9GA 3HAJA 5C5BB 3Q0KA 2EFLA 3HAHA 4NSWA 3M3WA 4H8SA 2D4CA 2RAKA 3QE6A 1X04A 2YKTA 2X3VA 2V0OA 1URUA 3I2WA 3HAIA 4FZSA 4AVMA 2Z0VA 3Q84A 2RAIA 1I4LA 2RAJA 3ACOA 4BNEA 1Y2OA 4AKVA 3SYVA 5C5BA 2X3WA 1I4DA 3LLLA 2C08A 2Q13A 3OK8A 3SOGA 3QWEA 3CAZA 4WPEA 1ZWWA 3QNIA 2D1LA 2X3XA 4I1QA 2Z0OA 4ATMA 1I4TA 3PLTA 1X03A 2Z0NA 2FICA 3DYTA 2EFKA
chains in the Genus database with same CATH superfamily
4E3CA 4UDYX 4EZTA 3D52A 3DX4A 3KDRA 1I49A 4NQIA 4NSWA 3EJPA 3T46A 2D4CA 3BVUA 1LQ7A 2YL8A 1SU7A 4IWOA 4D8JA 2Z0VA 3B51X 3GI7A 4BNEA 4EZUA 2Q13A 3DDFA 1TQSA 3T49A 3ABHA 1TQVA 4HR1B 4JLCA 2GAFD 2N3KA 5C5BB 4AZ7A 2RAKA 2YKTA 3RPMA 4EZVA 4AZ6A 3ACOA 3DDGA 5E84A 3CV5A 2YI9A 4F01A 1R34A 4EZRA 4AZCA 1TQUA 2WYIA 3L3PA 2WYHA 3BLBA 2NCZA 3VKHA 4EZQA 4EZPA 2O0I1 2YL9A 2EX3B 2PMRA 3BUPA 4AKVA 4EZNA 1ZWWA 4HY9A 1HXKA 3D50A 1HWWA 1ZYLA 3C7NA 1OA0A 2ELBA 2Q12A 3O3NB 3O3MB 3D2EA 2ZXQA 5FLEX 4IM3A 1TQTA 3BVTA 2OO2A 3EJUA 4F00A 2ND1A 1PS3A 4IM2A 1E2UA 2F7QA 1X03A 2YIVX 1E9VA 1O7DB 1YWMA 2QKWA 4AZ5A 4KIKB 4HR1A 5C5BA 2LXYA 2X3XA 2OBMA 3ER9B 3RV0A 3VEBA 2V0OA 2YIBA 2F1AA 4AVMA 3T47A 3T4AG 2PY6A 3CKDA 1I4DA 2C08A 4R5KA 2EFKA 2MI7A 3I04A 4IWPA 4AZHA 2OZNB 1DKZA 2FYVA 2Z8YA 3DPOA 2LM0A 2EWFA 4IM0A 2YL5A 3DPQA 3LMFA 4JWCA 1QWNA 4R5GA 3A98A 2RT6A 3QA8A 3QWEA 4WPEA 3CVRA 2JNSA 3EJQA 2X3VA 1O7DC 4FZPA 4WPCA 2OBLA 4E81A 1UPXA 2OW7A 3L3OM 4EZWA 4UDXX 1Y2OA 3SYVA 2X3WA 1JQKA 3ER8C 2YIAA 1GN9A 1I4LA 2Z0NA 4DYLA 3BVXA 3I39X 3QE6A 1HTYA 3DX2A 3D4ZA 3UITA 3DX3A 4R5LA 3CZSA 4ATMA 3DX0A 3D4YA 2OW6A 1R5EA 1QWUA 4JWIA 4JWEA 5KBPA 4AZCB 4IWQA 1SUFA 3CZNA 3BVVA 4FZOA 1MJGA 1E1DA 3QNIA 3HAHA 2YLLA 3F7WA 3KAWA 3ZEDA 2QFFA 3VEAA 2ALWA 1GNLA 4B9QA 3I01A 2WINM 4FZSA 2RAIA 2X5CA 1TQWA 2KHOA 2GA9D 3LLLA 1GNTA 4EZXA 4EZSA 2JNKA 3EJSA 3QNJA 4JNFA 3EJTA 4JL9A 2F7OA 4EZZA 5TKYA 3I2WA 4M0MA 3D51A 3Q84A 3BUDA 3LVTA 3DPPA 3B52X 3CAZA 3BUIA 4I1QA 2YLAA 2F7RA 3PLTA 3DYTA 4H6HA 3OHXM 3BUBA 1U00A 4DCNC 3G9GA 2F18A 1W9MA 4EZOA 1DKYA 1OA1A 3ERCC 5FIGA 1DKXA 2F7PA 3RV1A 4JWDA 4PO2A 2YI8A 4G6QA 2Z0OA 1OAOA 1I4TA 1WDZA 3D2FA 4KIKA 4FM3A 3OWGA 3B53X 1URUA 4AZBA 4AZIA 2RAJA 4HYBA 3DX1A 3FD9A 4IW0A 3BUQA 4NPHA 4JN4A 2EFLA 4H8SA 1X04A 4R5IA 1SU8A 3O3OB 3HAIA 1QX1A 4JNEA 3EJRA 2F1BA 3SOGA 4EZYA 3T48A 2FICA 3BVWA 3HAJA 3Q0KA 3M3WA 3KAVA 1SU6A 2QXLA 2GF4A 1R33A 2YL6A 4H6IA 4AZGA 3OK8A 4R5JA 2D1LA 2ND0A
chains in the Genus database with same CATH topology
3ABHA 1WDZA 4WPCA 2ELBA 1I49A 4NQIA 2Q12A 4DCNC 4DYLA 3G9GA 3HAJA 5C5BB 3Q0KA 2EFLA 3HAHA 4NSWA 3M3WA 4H8SA 2D4CA 2RAKA 3QE6A 1X04A 2YKTA 2X3VA 2V0OA 1URUA 3I2WA 3HAIA 4FZSA 4AVMA 2Z0VA 3Q84A 2RAIA 1I4LA 2RAJA 3ACOA 4BNEA 1Y2OA 4AKVA 3SYVA 5C5BA 2X3WA 1I4DA 3LLLA 2C08A 2Q13A 3OK8A 3SOGA 3QWEA 3CAZA 4WPEA 1ZWWA 3QNIA 2D1LA 2X3XA 4I1QA 2Z0OA 4ATMA 1I4TA 3PLTA 1X03A 2Z0NA 2FICA 3DYTA 2EFKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ABH A;  1WDZ A;  4WPC A;  2ELB A;  1I49 A;  4NQI A;  2Q12 A;  4DCN C;  4DYL A;  3G9G A;  3HAJ A;  5C5B B;  3Q0K A;  2EFL A;  3HAH A;  4NSW A;  3M3W A;  4H8S A;  2D4C A;  2RAK A;  3QE6 A;  1X04 A;  2YKT A;  2X3V A;  2V0O A;  1URU A;  3I2W A;  3HAI A;  4FZS A;  4AVM A;  2Z0V A;  3Q84 A;  2RAI A;  1I4L A;  2RAJ A;  3ACO A;  4BNE A;  1Y2O A;  4AKV A;  3SYV A;  5C5B A;  2X3W A;  1I4D A;  3LLL A;  2C08 A;  2Q13 A;  3OK8 A;  3SOG A;  3QWE A;  3CAZ A;  4WPE A;  1ZWW A;  3QNI A;  2D1L A;  2X3X A;  4I1Q A;  2Z0O A;  4ATM A;  1I4T A;  3PLT A;  1X03 A;  2Z0N A;  2FIC A;  3DYT A;  2EFK A; 
#chains in the Genus database with same CATH topology
 4E3C A;  4UDY X;  4EZT A;  3D52 A;  3DX4 A;  3KDR A;  1I49 A;  4NQI A;  4NSW A;  3EJP A;  3T46 A;  2D4C A;  3BVU A;  1LQ7 A;  2YL8 A;  1SU7 A;  4IWO A;  4D8J A;  2Z0V A;  3B51 X;  3GI7 A;  4BNE A;  4EZU A;  2Q13 A;  3DDF A;  1TQS A;  3T49 A;  3ABH A;  1TQV A;  4HR1 B;  4JLC A;  2GAF D;  2N3K A;  5C5B B;  4AZ7 A;  2RAK A;  2YKT A;  3RPM A;  4EZV A;  4AZ6 A;  3ACO A;  3DDG A;  5E84 A;  3CV5 A;  2YI9 A;  4F01 A;  1R34 A;  4EZR A;  4AZC A;  1TQU A;  2WYI A;  3L3P A;  2WYH A;  3BLB A;  2NCZ A;  3VKH A;  4EZQ A;  4EZP A;  2O0I 1;  2YL9 A;  2EX3 B;  2PMR A;  3BUP A;  4AKV A;  4EZN A;  1ZWW A;  4HY9 A;  1HXK A;  3D50 A;  1HWW A;  1ZYL A;  3C7N A;  1OA0 A;  2ELB A;  2Q12 A;  3O3N B;  3O3M B;  3D2E A;  2ZXQ A;  5FLE X;  4IM3 A;  1TQT A;  3BVT A;  2OO2 A;  3EJU A;  4F00 A;  2ND1 A;  1PS3 A;  4IM2 A;  1E2U A;  2F7Q A;  1X03 A;  2YIV X;  1E9V A;  1O7D B;  1YWM A;  2QKW A;  4AZ5 A;  4KIK B;  4HR1 A;  5C5B A;  2LXY A;  2X3X A;  2OBM A;  3ER9 B;  3RV0 A;  3VEB A;  2V0O A;  2YIB A;  2F1A A;  4AVM A;  3T47 A;  3T4A G;  2PY6 A;  3CKD A;  1I4D A;  2C08 A;  4R5K A;  2EFK A;  2MI7 A;  3I04 A;  4IWP A;  4AZH A;  2OZN B;  1DKZ A;  2FYV A;  2Z8Y A;  3DPO A;  2LM0 A;  2EWF A;  4IM0 A;  2YL5 A;  3DPQ A;  3LMF A;  4JWC A;  1QWN A;  4R5G A;  3A98 A;  2RT6 A;  3QA8 A;  3QWE A;  4WPE A;  3CVR A;  2JNS A;  3EJQ A;  2X3V A;  1O7D C;  4FZP A;  4WPC A;  2OBL A;  4E81 A;  1UPX A;  2OW7 A;  3L3O M;  4EZW A;  4UDX X;  1Y2O A;  3SYV A;  2X3W A;  1JQK A;  3ER8 C;  2YIA A;  1GN9 A;  1I4L A;  2Z0N A;  4DYL A;  3BVX A;  3I39 X;  3QE6 A;  1HTY A;  3DX2 A;  3D4Z A;  3UIT A;  3DX3 A;  4R5L A;  3CZS A;  4ATM A;  3DX0 A;  3D4Y A;  2OW6 A;  1R5E A;  1QWU A;  4JWI A;  4JWE A;  5KBP A;  4AZC B;  4IWQ A;  1SUF A;  3CZN A;  3BVV A;  4FZO A;  1MJG A;  1E1D A;  3QNI A;  3HAH A;  2YLL A;  3F7W A;  3KAW A;  3ZED A;  2QFF A;  3VEA A;  2ALW A;  1GNL A;  4B9Q A;  3I01 A;  2WIN M;  4FZS A;  2RAI A;  2X5C A;  1TQW A;  2KHO A;  2GA9 D;  3LLL A;  1GNT A;  4EZX A;  4EZS A;  2JNK A;  3EJS A;  3QNJ A;  4JNF A;  3EJT A;  4JL9 A;  2F7O A;  4EZZ A;  5TKY A;  3I2W A;  4M0M A;  3D51 A;  3Q84 A;  3BUD A;  3LVT A;  3DPP A;  3B52 X;  3CAZ A;  3BUI A;  4I1Q A;  2YLA A;  2F7R A;  3PLT A;  3DYT A;  4H6H A;  3OHX M;  3BUB A;  1U00 A;  4DCN C;  3G9G A;  2F18 A;  1W9M A;  4EZO A;  1DKY A;  1OA1 A;  3ERC C;  5FIG A;  1DKX A;  2F7P A;  3RV1 A;  4JWD A;  4PO2 A;  2YI8 A;  4G6Q A;  2Z0O A;  1OAO A;  1I4T A;  1WDZ A;  3D2F A;  4KIK A;  4FM3 A;  3OWG A;  3B53 X;  1URU A;  4AZB A;  4AZI A;  2RAJ A;  4HYB A;  3DX1 A;  3FD9 A;  4IW0 A;  3BUQ A;  4NPH A;  4JN4 A;  2EFL A;  4H8S A;  1X04 A;  4R5I A;  1SU8 A;  3O3O B;  3HAI A;  1QX1 A;  4JNE A;  3EJR A;  2F1B A;  3SOG A;  4EZY A;  3T48 A;  2FIC A;  3BVW A;  3HAJ A;  3Q0K A;  3M3W A;  3KAV A;  1SU6 A;  2QXL A;  2GF4 A;  1R33 A;  2YL6 A;  4H6I A;  4AZG A;  3OK8 A;  4R5J A;  2D1L A;  2ND0 A; 
#chains in the Genus database with same CATH homology
 3ABH A;  1WDZ A;  4WPC A;  2ELB A;  1I49 A;  4NQI A;  2Q12 A;  4DCN C;  4DYL A;  3G9G A;  3HAJ A;  5C5B B;  3Q0K A;  2EFL A;  3HAH A;  4NSW A;  3M3W A;  4H8S A;  2D4C A;  2RAK A;  3QE6 A;  1X04 A;  2YKT A;  2X3V A;  2V0O A;  1URU A;  3I2W A;  3HAI A;  4FZS A;  4AVM A;  2Z0V A;  3Q84 A;  2RAI A;  1I4L A;  2RAJ A;  3ACO A;  4BNE A;  1Y2O A;  4AKV A;  3SYV A;  5C5B A;  2X3W A;  1I4D A;  3LLL A;  2C08 A;  2Q13 A;  3OK8 A;  3SOG A;  3QWE A;  3CAZ A;  4WPE A;  1ZWW A;  3QNI A;  2D1L A;  2X3X A;  4I1Q A;  2Z0O A;  4ATM A;  1I4T A;  3PLT A;  1X03 A;  2Z0N A;  2FIC A;  3DYT A;  2EFK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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