2FL3A

Binary complex of restriction endonuclease hinp1i with cognate dna
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
247
structure length
247
Chain Sequence
MNLVELGSKTAKDGFKNEKDIADRFENWKENSEAQDWLVTMGHNLDEIKSVKAVVLSGYKSDINVQVLVFYKDALDIHNIQVKLVSNKRGFNQIDKHWLAHYQEMWKFDDNLLRILRHFTGELPPYHSNTKDKRRMFMTEFSQEEQNIVLNWLEKNRVLVLTDILRGRGDFAAEWVLVAQKVSNNARWILRNINEVLQHYGSGDISLSPRGSINFGRVTIQRKGGDNGRETANMLQFKIDPTELFDI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords 5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3'
publication title DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion.
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 77
structure length 247
sequence length 247
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2006-01-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11463 R-HINP1I R.HinP1I restriction endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.40 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 2fl3A01
2FL3A 2FKCA 2FKHB 2FLCA 1YNMA
chains in the Genus database with same CATH superfamily
1F1ZA 3P1YA 2VS1A 2CZRA 3AJVB 3BT7A 4LQEA 2WJ0A 4QBOA 2FKHB 4DA2A 2WIZA 2JJQA 2GJWA 3IEYA 1Y1OA 2WIWA 2BH2A 1ZP7A 2WCWA 4TKDA 1IPIA 2ZYZA 1RZNA 3IEYB 1T0FA 2WCZA 4QBLA 4ZQUA 3P1ZA 1OB8A 2ZYZB 4G6UA 4E6ZA 2Z0RA 1GEFA 1HH1A 1RLVA 3DNXA 3IF0X 2FCOA 3P1ZB 1Y88A 2W8MA 4QBNA 2DBSA 2OKFA 2INBA 4G6VA 1UWVA 1A79A 1OB9A 4DAPA 2FLCA 2VLDA 1YNMA 2OSTA 2FL3A 4TKKA 5FDKA 1XMXA 1R11A 1R0VA 2EO0A 4DAVA 2FKCA 3FOVA 2CV8A 2GW6A 4EV1A 3AJVA 2IXSA
chains in the Genus database with same CATH topology
1F1ZA 3P1YA 2VS1A 2CZRA 3AJVB 3BT7A 4LQEA 2WJ0A 4QBOA 2FKHB 4DA2A 2WIZA 2JJQA 2GJWA 3IEYA 1Y1OA 2WIWA 2BH2A 1ZP7A 2WCWA 4TKDA 1IPIA 2ZYZA 1RZNA 3IEYB 1T0FA 2WCZA 4QBLA 4ZQUA 3P1ZA 1OB8A 2ZYZB 4G6UA 4E6ZA 2Z0RA 1GEFA 1HH1A 1RLVA 3DNXA 3IF0X 2FCOA 3P1ZB 1Y88A 2W8MA 4QBNA 2DBSA 2OKFA 2INBA 4G6VA 1UWVA 1A79A 1OB9A 4DAPA 2FLCA 2VLDA 1YNMA 2OSTA 2FL3A 4TKKA 5FDKA 1XMXA 1R11A 1R0VA 2EO0A 4DAVA 2FKCA 3FOVA 2CV8A 2GW6A 4EV1A 3AJVA 2IXSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FL3 A;  2FKC A;  2FKH B;  2FLC A;  1YNM A; 
#chains in the Genus database with same CATH topology
 1F1Z A;  3P1Y A;  2VS1 A;  2CZR A;  3AJV B;  3BT7 A;  4LQE A;  2WJ0 A;  4QBO A;  2FKH B;  4DA2 A;  2WIZ A;  2JJQ A;  2GJW A;  3IEY A;  1Y1O A;  2WIW A;  2BH2 A;  1ZP7 A;  2WCW A;  4TKD A;  1IPI A;  2ZYZ A;  1RZN A;  3IEY B;  1T0F A;  2WCZ A;  4QBL A;  4ZQU A;  3P1Z A;  1OB8 A;  2ZYZ B;  4G6U A;  4E6Z A;  2Z0R A;  1GEF A;  1HH1 A;  1RLV A;  3DNX A;  3IF0 X;  2FCO A;  3P1Z B;  1Y88 A;  2W8M A;  4QBN A;  2DBS A;  2OKF A;  2INB A;  4G6V A;  1UWV A;  1A79 A;  1OB9 A;  4DAP A;  2FLC A;  2VLD A;  1YNM A;  2OST A;  2FL3 A;  4TKK A;  5FDK A;  1XMX A;  1R11 A;  1R0V A;  2EO0 A;  4DAV A;  2FKC A;  3FOV A;  2CV8 A;  2GW6 A;  4EV1 A;  3AJV A;  2IXS A; 
#chains in the Genus database with same CATH homology
 1F1Z A;  3P1Y A;  2VS1 A;  2CZR A;  3AJV B;  3BT7 A;  4LQE A;  2WJ0 A;  4QBO A;  2FKH B;  4DA2 A;  2WIZ A;  2JJQ A;  2GJW A;  3IEY A;  1Y1O A;  2WIW A;  2BH2 A;  1ZP7 A;  2WCW A;  4TKD A;  1IPI A;  2ZYZ A;  1RZN A;  3IEY B;  1T0F A;  2WCZ A;  4QBL A;  4ZQU A;  3P1Z A;  1OB8 A;  2ZYZ B;  4G6U A;  4E6Z A;  2Z0R A;  1GEF A;  1HH1 A;  1RLV A;  3DNX A;  3IF0 X;  2FCO A;  3P1Z B;  1Y88 A;  2W8M A;  4QBN A;  2DBS A;  2OKF A;  2INB A;  4G6V A;  1UWV A;  1A79 A;  1OB9 A;  4DAP A;  2FLC A;  2VLD A;  1YNM A;  2OST A;  2FL3 A;  4TKK A;  5FDK A;  1XMX A;  1R11 A;  1R0V A;  2EO0 A;  4DAV A;  2FKC A;  3FOV A;  2CV8 A;  2GW6 A;  4EV1 A;  3AJV A;  2IXS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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