2FQOA

Crystal structure of b. subtilis luxs in complex with (2s)-2-amino-4-[(2r,3r)-2,3-dihydroxy-3-n- hydroxycarbamoyl-propylmercapto]butyric acid
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
154
structure length
154
Chain Sequence
VESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGCQTGYYLVVSGEPTSAEIVDLLEDTMKEAVEITEIPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEELLKVFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords S-ribosylhomocysteine lyase
publication title Design and Synthesis of Substrate and Intermediate Analogue Inhibitors of S-Ribosylhomocysteinase
pubmed doi rcsb
source organism Bacillus subtilis
total genus 45
structure length 154
sequence length 154
ec nomenclature ec 4.4.1.21: S-ribosylhomocysteine lyase.
pdb deposition date 2006-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02664 LuxS S-Ribosylhomocysteinase (LuxS)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.80 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 S-ribosylhomocysteinase (LuxS) 2fqoA00
1YCLA 1VJEA 1JOEA 1INNA 1JQWA 1VH2A 1J98A 2FQOA 4XCHA 1IE0A 1JVIA 1J6WA 1VGXA 2FQTA 5E68A 1J6VA 1J6XA
chains in the Genus database with same CATH superfamily
1WSVA 4A3JK 3S14K 1TWFK 1TWHA 1USMA 4FZBA 5TMCA 3OREA 1O2BA 4A3BK 4GTLA 3S2DK 4A3GC 4KAWX 2B63K 4M1XA 2NVTK 4P9SA 4A3EC 1O2FB 2VUMA 3GTGK 1WOOA 2R92C 3S2HK 1WCMA 1SFOA 1ZXOA 2A6HA 4OINA 2JA7A 5C3EK 3GTKK 5EGEA 3OEPA 3RZOC 4Y7NK 3TFJA 2JA8K 3PO3K 3HKZD 3S1NK 1K83C 4KC6A 1ZVUA 1UV7A 3V4GA 2NVXC 1TWCK 1O26A 1IQ0A 1VGXA 4RMFA 4KB4A 4A3KK 2P8TA 1TWGC 1XZPB 4BBRC 4A3MK 4YFXA 1WQHA 1J6XA 3PO2K 4BY7K 3SZZA 2GAHC 2YU9C 4WJ3M 3BP3A 5M5XK 5FLMC 3GTJC 2R93C 3CAGA 3S1RC 2WAQL 1XZQA 1DCPA 4BBSC 4KARA 2GSOA 1TWHC 4A3EK 2R92K 3S15K 3LAPA 3GIRA 1TWAA 4AH6A 4ZH4A 3H0GA 3RZOK 3T01A 4KMDA 2ZUEA 5C4JC 2W7VA 2JA5A 3FKIA 2VUMC 1WCMC 3GTPA 5IP7K 2JA7C 1DD5A 1TWFC 4KB2A 4G0WA 3GEHA 1TWGK 4BXXK 2R7ZK 4BBRK 4A3BC 2WAQD 1YNJA 4DDQA 4Q4ZA 4XCHA 3EQLA 3GTOA 1SMYA 2YU9K 2NVTC 5CHPA 5FLMK 3GTJK 2R93K 1F93A 3S1RK 2O5IA 4WILA 4Y7NC 2JA8C 3M4OC 4X6AC 2E2HK 3S1NC 5IOSA 3A8JA 2A6EA 2CW0A 1TWHK 2V6UA 2CFAA 5EGHA 1TWCC 4A3LK 2FQOA 3CQZA 2PMZL 4KATA 3RZDC 3HKZL 4C3JK 4LLGA 1L0WA 5C4JK 1WOSA 2FQTA 2VUMK 1HI9A 4MQ9A 1TWAC 1WCMK 1SFOK 4LK0A 1XZPA 1YX2A 2ZFZA 3H3VL 2JA7K 4Q5SA 3H0GC 3GTMA 4OIRA 1I3QA 2GSUA 5C44C 1VH2A 2JH3A 4G0UA 3FKIC 2E2IA 1R9TA 3GTQA 4QIWL 1O24A 4XSXA 3HOXC 3S15C 2CFAB 3L4JA 4A3DK 3FOEA 2PMZD 3M4OK 4X6AK 3GTOC 3GEEA 1JOEA 3AQPA 5IP9C 5E68A 2A69A 4KDDA 4O2DA 4GTEA 4KMHA 1Y1WA 5IP7C 1XXBA 3H3VD 3TTGA 3RZDK 4BXXC 1JVIA 1Y1VA 2R7ZC 4KN7A 3K7AC 3HOYK 1VRQC 5C4XC 3GDZA 1TWAK 2WB1D 4QIWD 1IE0A 3H0GK 1RU0A 4KMUA 2B63A 3CQZC 5C44K 2JA5K 3FKIK 3AD7C 3GTGA 2E2HC 5JFEA 1KQ4A 3GTPK 1ZYRA 2XCRB 4XSZA 2D6FC 3BP8C 1JQWA 1V5VA 3HOXK 4OIPA 1I6HK 4KASA 3S1MC 4A3LC 1YCLA 3OPFA 2BE5A 2E2IC 3HOUK 3GTOK 5IYDC 1PJ6A 1ZBSA 4C3JC 3ADAC 5IP9K 3GTQC 2E2JC 3M3YK 4KN4A 4A3CC 3LPXA 3TFHA 3G4AA 4PAAA 1VLOA 3G4CA 1SFOC 5IYCK 1PJ5A 2P5MA 4JK1A 3S16K 4QJVB 3K7AK 5C4XK 3S17C 3ERED 3FOFA 3CQZK 3VA7A 4BKWA 3GEIA 1O27A 3AD8C 1G51A 4A3DC 4A3IK 4YG2A 1IW7A 1GE9A 3GTMK 3HOVC 1I3QK 4LR2A 3I4NK 3I4MC 4G7OA 5M5YK 3S1MK 1K83A 1ZQ1C 3Q3QA 5HL8A 4BY1K 4A3FC 2E2IK 4KMAA 2PA8D 4P5AA 1O28A 1DCHA 3A8IA 1R9TK 5IYDK 1B4BA 3GTQK 2NVXA 1HQMA 2Y3PA 2E2JK 3HOYC 4A3CK 3GTLA 1EH1A 1IBAA 1TWGA 4XLPA 2ZUFA 1BJTA 1F9NA 3T02A 1C0AA 4C2MK 1B4AA 4Y52K 2RH6A 2YU9A 3LAJA 2JA5C 1I50A 3S17K 5TJ3A 3GTJA 2WB1L 3GTPC 4BLAA 3L4KA 1Y1WK 4GT9A 5CJ9A 1VJEA 4LK1A 1I6HC 1YNNA 4MEYA 1Y1VK 1WSRA 3HOUC 4FM9A 5FJ8K 4WJ4A 4GTCA 3M3YC 3HOVK 2JA6A 3I4MK 4GTBA 5IYCC 2Y0SD 2NVQC 3IPJA 4YFNA 4A3FK 3JSTA 3HXAA 2PHCB 4XLNA 3S16C 2NVYA 1EI6A 2EBBA 1BDFA 3WODA 1TWFA 1F7UA 3N3YA 1USOA 1O25A 1WORA 4GFQA 4BLBA 4QJVA 4C3IC 5IYBC 4LOWA 4OIOA 2O5JA 1O2AA 3HOWC 4A93C 3FHZA 1INNA 3GTLC 2A68A 3S0XA 4A3IC 5M3FK 1IL2A 3BUEA 1F7VA 3GTMC 3GTKA 5IOTA 5D4DA 1I3QC 3I4NC 2XCOA 4BY1C 4LQYA 1I50C 1R9TC 4C3HC 1WQGA 3T00A 4J3NA 1TWCA 4G7HA 1J98A 4A3GK 1AB4A 3AD9C 4YFKA 5TMFA 2NVQK 2XCQA 4C2MC 2PA8L 5IORA 4PABA 4Y52C 1EQRA 4KM9A 1DCOA 1XPPA 3N0BA 2JA6C 1X31C 4G0VA 3GSIA 1Y1WC 4GTFA 1K83K 1J6WA 2PPBA 1EK8A 4C3IK 4GTAA 5IYBK 4GZYA 1WQFA 3S1QC 4NOIA 2NVYC 1Y1VC 2KWAA 1WOPA 2NVXK 3HOWK 3HOZC 4MEXA 4A93K 2GAGC 4A3JC 3GTLK 3S14C 3DXJA 2R92A 3NUHA 4G7ZA 1XXAA 5M5WK 3S2DC 2B63C 3A8KA 3TFIA 2GSNA 4AYBL 5M3MK 2V6TA 1EFWA 4LJZA 1I6VA 1XZQB 5L46A 1I50K 3GTGC 1IS1A 1BS2A 3S2HC 3AH5A 4C3HK 4ILDA 5C3EC 3GTKC 4C45A 2V6SA 3PO3C 3N0CA 4P5BA 4BBSK 4KM8A 2Y0SL 1BGWA 2R7ZA 3AQOA 3MMLB 4A3KC 4OIQA 2JA6K 5IOQA 2R93A 1J6VA 3QX3A 4GTDA 1ISEA 1XXCA 1PJ7A 4A3MC 1O29A 3SZYA 2RGRA 3PO2C 3S1QK 4BY7C 5JVOA 4AYBD 2E2HA 2NVYK 1WIHA 3HOZK
chains in the Genus database with same CATH topology
1YCLA 1VJEA 1JOEA 1INNA 1JQWA 1VH2A 1J98A 2FQOA 4XCHA 1IE0A 1JVIA 1J6WA 1VGXA 2FQTA 5E68A 1J6VA 1J6XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YCL A;  1VJE A;  1JOE A;  1INN A;  1JQW A;  1VH2 A;  1J98 A;  2FQO A;  4XCH A;  1IE0 A;  1JVI A;  1J6W A;  1VGX A;  2FQT A;  5E68 A;  1J6V A;  1J6X A; 
#chains in the Genus database with same CATH topology
 1WSV A;  4A3J K;  3S14 K;  1TWF K;  1TWH A;  1USM A;  4FZB A;  5TMC A;  3ORE A;  1O2B A;  4A3B K;  4GTL A;  3S2D K;  4A3G C;  4KAW X;  2B63 K;  4M1X A;  2NVT K;  4P9S A;  4A3E C;  1O2F B;  2VUM A;  3GTG K;  1WOO A;  2R92 C;  3S2H K;  1WCM A;  1SFO A;  1ZXO A;  2A6H A;  4OIN A;  2JA7 A;  5C3E K;  3GTK K;  5EGE A;  3OEP A;  3RZO C;  4Y7N K;  3TFJ A;  2JA8 K;  3PO3 K;  3HKZ D;  3S1N K;  1K83 C;  4KC6 A;  1ZVU A;  1UV7 A;  3V4G A;  2NVX C;  1TWC K;  1O26 A;  1IQ0 A;  1VGX A;  4RMF A;  4KB4 A;  4A3K K;  2P8T A;  1TWG C;  1XZP B;  4BBR C;  4A3M K;  4YFX A;  1WQH A;  1J6X A;  3PO2 K;  4BY7 K;  3SZZ A;  2GAH C;  2YU9 C;  4WJ3 M;  3BP3 A;  5M5X K;  5FLM C;  3GTJ C;  2R93 C;  3CAG A;  3S1R C;  2WAQ L;  1XZQ A;  1DCP A;  4BBS C;  4KAR A;  2GSO A;  1TWH C;  4A3E K;  2R92 K;  3S15 K;  3LAP A;  3GIR A;  1TWA A;  4AH6 A;  4ZH4 A;  3H0G A;  3RZO K;  3T01 A;  4KMD A;  2ZUE A;  5C4J C;  2W7V A;  2JA5 A;  3FKI A;  2VUM C;  1WCM C;  3GTP A;  5IP7 K;  2JA7 C;  1DD5 A;  1TWF C;  4KB2 A;  4G0W A;  3GEH A;  1TWG K;  4BXX K;  2R7Z K;  4BBR K;  4A3B C;  2WAQ D;  1YNJ A;  4DDQ A;  4Q4Z A;  4XCH A;  3EQL A;  3GTO A;  1SMY A;  2YU9 K;  2NVT C;  5CHP A;  5FLM K;  3GTJ K;  2R93 K;  1F93 A;  3S1R K;  2O5I A;  4WIL A;  4Y7N C;  2JA8 C;  3M4O C;  4X6A C;  2E2H K;  3S1N C;  5IOS A;  3A8J A;  2A6E A;  2CW0 A;  1TWH K;  2V6U A;  2CFA A;  5EGH A;  1TWC C;  4A3L K;  2FQO A;  3CQZ A;  2PMZ L;  4KAT A;  3RZD C;  3HKZ L;  4C3J K;  4LLG A;  1L0W A;  5C4J K;  1WOS A;  2FQT A;  2VUM K;  1HI9 A;  4MQ9 A;  1TWA C;  1WCM K;  1SFO K;  4LK0 A;  1XZP A;  1YX2 A;  2ZFZ A;  3H3V L;  2JA7 K;  4Q5S A;  3H0G C;  3GTM A;  4OIR A;  1I3Q A;  2GSU A;  5C44 C;  1VH2 A;  2JH3 A;  4G0U A;  3FKI C;  2E2I A;  1R9T A;  3GTQ A;  4QIW L;  1O24 A;  4XSX A;  3HOX C;  3S15 C;  2CFA B;  3L4J A;  4A3D K;  3FOE A;  2PMZ D;  3M4O K;  4X6A K;  3GTO C;  3GEE A;  1JOE A;  3AQP A;  5IP9 C;  5E68 A;  2A69 A;  4KDD A;  4O2D A;  4GTE A;  4KMH A;  1Y1W A;  5IP7 C;  1XXB A;  3H3V D;  3TTG A;  3RZD K;  4BXX C;  1JVI A;  1Y1V A;  2R7Z C;  4KN7 A;  3K7A C;  3HOY K;  1VRQ C;  5C4X C;  3GDZ A;  1TWA K;  2WB1 D;  4QIW D;  1IE0 A;  3H0G K;  1RU0 A;  4KMU A;  2B63 A;  3CQZ C;  5C44 K;  2JA5 K;  3FKI K;  3AD7 C;  3GTG A;  2E2H C;  5JFE A;  1KQ4 A;  3GTP K;  1ZYR A;  2XCR B;  4XSZ A;  2D6F C;  3BP8 C;  1JQW A;  1V5V A;  3HOX K;  4OIP A;  1I6H K;  4KAS A;  3S1M C;  4A3L C;  1YCL A;  3OPF A;  2BE5 A;  2E2I C;  3HOU K;  3GTO K;  5IYD C;  1PJ6 A;  1ZBS A;  4C3J C;  3ADA C;  5IP9 K;  3GTQ C;  2E2J C;  3M3Y K;  4KN4 A;  4A3C C;  3LPX A;  3TFH A;  3G4A A;  4PAA A;  1VLO A;  3G4C A;  1SFO C;  5IYC K;  1PJ5 A;  2P5M A;  4JK1 A;  3S16 K;  4QJV B;  3K7A K;  5C4X K;  3S17 C;  3ERE D;  3FOF A;  3CQZ K;  3VA7 A;  4BKW A;  3GEI A;  1O27 A;  3AD8 C;  1G51 A;  4A3D C;  4A3I K;  4YG2 A;  1IW7 A;  1GE9 A;  3GTM K;  3HOV C;  1I3Q K;  4LR2 A;  3I4N K;  3I4M C;  4G7O A;  5M5Y K;  3S1M K;  1K83 A;  1ZQ1 C;  3Q3Q A;  5HL8 A;  4BY1 K;  4A3F C;  2E2I K;  4KMA A;  2PA8 D;  4P5A A;  1O28 A;  1DCH A;  3A8I A;  1R9T K;  5IYD K;  1B4B A;  3GTQ K;  2NVX A;  1HQM A;  2Y3P A;  2E2J K;  3HOY C;  4A3C K;  3GTL A;  1EH1 A;  1IBA A;  1TWG A;  4XLP A;  2ZUF A;  1BJT A;  1F9N A;  3T02 A;  1C0A A;  4C2M K;  1B4A A;  4Y52 K;  2RH6 A;  2YU9 A;  3LAJ A;  2JA5 C;  1I50 A;  3S17 K;  5TJ3 A;  3GTJ A;  2WB1 L;  3GTP C;  4BLA A;  3L4K A;  1Y1W K;  4GT9 A;  5CJ9 A;  1VJE A;  4LK1 A;  1I6H C;  1YNN A;  4MEY A;  1Y1V K;  1WSR A;  3HOU C;  4FM9 A;  5FJ8 K;  4WJ4 A;  4GTC A;  3M3Y C;  3HOV K;  2JA6 A;  3I4M K;  4GTB A;  5IYC C;  2Y0S D;  2NVQ C;  3IPJ A;  4YFN A;  4A3F K;  3JST A;  3HXA A;  2PHC B;  4XLN A;  3S16 C;  2NVY A;  1EI6 A;  2EBB A;  1BDF A;  3WOD A;  1TWF A;  1F7U A;  3N3Y A;  1USO A;  1O25 A;  1WOR A;  4GFQ A;  4BLB A;  4QJV A;  4C3I C;  5IYB C;  4LOW A;  4OIO A;  2O5J A;  1O2A A;  3HOW C;  4A93 C;  3FHZ A;  1INN A;  3GTL C;  2A68 A;  3S0X A;  4A3I C;  5M3F K;  1IL2 A;  3BUE A;  1F7V A;  3GTM C;  3GTK A;  5IOT A;  5D4D A;  1I3Q C;  3I4N C;  2XCO A;  4BY1 C;  4LQY A;  1I50 C;  1R9T C;  4C3H C;  1WQG A;  3T00 A;  4J3N A;  1TWC A;  4G7H A;  1J98 A;  4A3G K;  1AB4 A;  3AD9 C;  4YFK A;  5TMF A;  2NVQ K;  2XCQ A;  4C2M C;  2PA8 L;  5IOR A;  4PAB A;  4Y52 C;  1EQR A;  4KM9 A;  1DCO A;  1XPP A;  3N0B A;  2JA6 C;  1X31 C;  4G0V A;  3GSI A;  1Y1W C;  4GTF A;  1K83 K;  1J6W A;  2PPB A;  1EK8 A;  4C3I K;  4GTA A;  5IYB K;  4GZY A;  1WQF A;  3S1Q C;  4NOI A;  2NVY C;  1Y1V C;  2KWA A;  1WOP A;  2NVX K;  3HOW K;  3HOZ C;  4MEX A;  4A93 K;  2GAG C;  4A3J C;  3GTL K;  3S14 C;  3DXJ A;  2R92 A;  3NUH A;  4G7Z A;  1XXA A;  5M5W K;  3S2D C;  2B63 C;  3A8K A;  3TFI A;  2GSN A;  4AYB L;  5M3M K;  2V6T A;  1EFW A;  4LJZ A;  1I6V A;  1XZQ B;  5L46 A;  1I50 K;  3GTG C;  1IS1 A;  1BS2 A;  3S2H C;  3AH5 A;  4C3H K;  4ILD A;  5C3E C;  3GTK C;  4C45 A;  2V6S A;  3PO3 C;  3N0C A;  4P5B A;  4BBS K;  4KM8 A;  2Y0S L;  1BGW A;  2R7Z A;  3AQO A;  3MML B;  4A3K C;  4OIQ A;  2JA6 K;  5IOQ A;  2R93 A;  1J6V A;  3QX3 A;  4GTD A;  1ISE A;  1XXC A;  1PJ7 A;  4A3M C;  1O29 A;  3SZY A;  2RGR A;  3PO2 C;  3S1Q K;  4BY7 C;  5JVO A;  4AYB D;  2E2H A;  2NVY K;  1WIH A;  3HOZ K; 
#chains in the Genus database with same CATH homology
 1YCL A;  1VJE A;  1JOE A;  1INN A;  1JQW A;  1VH2 A;  1J98 A;  2FQO A;  4XCH A;  1IE0 A;  1JVI A;  1J6W A;  1VGX A;  2FQT A;  5E68 A;  1J6V A;  1J6X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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