2FY5A

Structures of ligand bound human choline acetyltransferase provide insight into regulation of acetylcholine synthesis
Total Genus 218
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
218
Knots found
sequence length
594
structure length
577
Chain Sequence
SGLPKLPVPPLQQTLATYLQCMRHLVSEEQFRKSQAIVQQFGAPGGLGETLQQKLLERQEKTANWVSEYWLNDMYLNNRLALPVNSSPAVIFARQHFPGTDDQLRFAASLISGVLSYKALLDSHSIPTDCAKGQLSGQPLCMKQYYGLFSSYRLPGHTQDTLVMPEPEHVIVACCNQFFVLDVVINFRRLSEGDLFTQLRKIVKMASNAAARLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLDMIERCICLVCLDAPGGVELSDTHRALQLLHGGGYSKNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDGIVLVQCTEHLLKHMPLPAPRRLRWKCSPEIQGHLASSAEKLQRIVKNLDFIVYKFDNYGKTFIKKQKCSPDAFIQVALQLAFYRLHRRLVPTYESASIRRFQEGRVDNIRSATPEALAFVRAVTDHKAAVPASEKLLLLKDAIRAQTAYTVMAITGMAIDNHLLALRELARAMCAALPEMFMDETYLMSNRFVLSTSQVPTTTEMFCCYGPVVPNGYGACYNPQPETILFCISSFHSCAATSSSKFAKAVEESLIDMRDLCSLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Choline O-acetyltransferase
publication title Substrate binding and catalytic mechanism of human choline acetyltransferase.
pubmed doi rcsb
source organism Homo sapiens
total genus 218
structure length 577
sequence length 594
other databases KnotProt 2.0: Artifct K -31 -31 -
ec nomenclature ec 2.3.1.6: Choline O-acetyltransferase.
pdb deposition date 2006-02-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 2fy5A01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 2fy5A02
2H3PA 2FYOA 2DEBA 1T7QA 1T1UA 2H4TA 1T7NA 2H3WA 1NDBA 2FW3A 2FY2A 1S5OA 1NDIA 2FY5A 4EP9A 2FY3A 2FY4A 1T7OA 4EPHA 1NM8A 2RCUA 4EYWA 1Q6XA 2H3UA 1NDFA
chains in the Genus database with same CATH superfamily
2FYOA 1L5AA 1C4TA 3U9BA 4G2MA 1S5OA 1NDIA 1Q23A 2ZBAA 2RKTA 2FY5A 2IHWA 1NOCB 1DPBA 1EAEA 1NM8A 4EYWA 1Q6XA 4G22A 2E1VA 2H3UA 4KE4A 1DPCA 2E1TA 1NDFA 1EADA 2DEBA 1QCAA 3FOTA 2H3WA 1SCZA 4JN3A 2E1UA 2JGPA 4G0BA 5KJUA 1XL7A 5KJVA 4EP9A 1T7OA 2BGHA 1E2OA 1XL8A 3L60A 4JN5A 2II5A 2CLAA 5FANA 2XHGA 1T1UA 2H4TA 1DPDA 5KJTA 3CLAA 1XMCA 2FW3A 2II4A 1EAAA 1XMDA 2FY3A 2FY4A 3B2SA 3FP0A 2RCUA 1EACA 5FALA 4KECA 3U9FA 3B30A 2H3PA 4N72A 5DU9A 1T7QA 1PD5A 1T7NA 4CLAA 1NDBA 2RKVA 2XR7A 2I9DA 2FY2A 1CIAA 5KJWA 2VSQA 3MAEA 5KJSA 5DUAA 1EABA 4HVMA 1CLAA 1EAFA 5T3EA 2II3A 1Q9JA 4EPHA
chains in the Genus database with same CATH topology
2H3PA 5DU9A 2FYOA 2DEBA 2XHGA 1T7QA 1T1UA 2H4TA 3FOTA 1L5AA 1T7NA 2H3WA 4JN3A 1NDBA 2FW3A 2JGPA 2FY2A 1S5OA 1NDIA 2VSQA 2FY5A 5DUAA 4HVMA 4EP9A 5T3EA 2FY3A 2FY4A 3FP0A 1T7OA 1Q9JA 1NM8A 4EPHA 2RCUA 4EYWA 1Q6XA 2H3UA 4JN5A 1NDFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H3P A;  2FYO A;  2DEB A;  1T7Q A;  1T1U A;  2H4T A;  1T7N A;  2H3W A;  1NDB A;  2FW3 A;  2FY2 A;  1S5O A;  1NDI A;  2FY5 A;  4EP9 A;  2FY3 A;  2FY4 A;  1T7O A;  4EPH A;  1NM8 A;  2RCU A;  4EYW A;  1Q6X A;  2H3U A;  1NDF A; 
#chains in the Genus database with same CATH topology
 2FYO A;  1L5A A;  1C4T A;  3U9B A;  4G2M A;  1S5O A;  1NDI A;  1Q23 A;  2ZBA A;  2RKT A;  2FY5 A;  2IHW A;  1NOC B;  1DPB A;  1EAE A;  1NM8 A;  4EYW A;  1Q6X A;  4G22 A;  2E1V A;  2H3U A;  4KE4 A;  1DPC A;  2E1T A;  1NDF A;  1EAD A;  2DEB A;  1QCA A;  3FOT A;  2H3W A;  1SCZ A;  4JN3 A;  2E1U A;  2JGP A;  4G0B A;  5KJU A;  1XL7 A;  5KJV A;  4EP9 A;  1T7O A;  2BGH A;  1E2O A;  1XL8 A;  3L60 A;  4JN5 A;  2II5 A;  2CLA A;  5FAN A;  2XHG A;  1T1U A;  2H4T A;  1DPD A;  5KJT A;  3CLA A;  1XMC A;  2FW3 A;  2II4 A;  1EAA A;  1XMD A;  2FY3 A;  2FY4 A;  3B2S A;  3FP0 A;  2RCU A;  1EAC A;  5FAL A;  4KEC A;  3U9F A;  3B30 A;  2H3P A;  4N72 A;  5DU9 A;  1T7Q A;  1PD5 A;  1T7N A;  4CLA A;  1NDB A;  2RKV A;  2XR7 A;  2I9D A;  2FY2 A;  1CIA A;  5KJW A;  2VSQ A;  3MAE A;  5KJS A;  5DUA A;  1EAB A;  4HVM A;  1CLA A;  1EAF A;  5T3E A;  2II3 A;  1Q9J A;  4EPH A; 
#chains in the Genus database with same CATH homology
 2H3P A;  5DU9 A;  2FYO A;  2DEB A;  2XHG A;  1T7Q A;  1T1U A;  2H4T A;  3FOT A;  1L5A A;  1T7N A;  2H3W A;  4JN3 A;  1NDB A;  2FW3 A;  2JGP A;  2FY2 A;  1S5O A;  1NDI A;  2VSQ A;  2FY5 A;  5DUA A;  4HVM A;  4EP9 A;  5T3E A;  2FY3 A;  2FY4 A;  3FP0 A;  1T7O A;  1Q9J A;  1NM8 A;  4EPH A;  2RCU A;  4EYW A;  1Q6X A;  2H3U A;  4JN5 A;  1NDF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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