2G16A

Structure of s65a y66s gfp variant after backbone fragmentation
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
62
structure length
62
Chain Sequence
KGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Luminescent protein
molecule keywords Green fluorescent protein
publication title Understanding GFP Posttranslational Chemistry: Structures of Designed Variants that Achieve Backbone Fragmentation, Hydrolysis, and Decarboxylation.
pubmed doi rcsb
source organism Aequorea victoria
total genus 11
structure length 62
sequence length 62
ec nomenclature
pdb deposition date 2006-02-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1300.40 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 Pantoate--beta-alanine Ligase; Chain: A,domain 2 2g16A00
2A54A 2G16A 2A52A 2G3DA 2GW4A 2A50A 3CFFL 2G2SA 5EXCA 3CFHL 3LF4A 2G5ZA 2A53A 3CFAL 2A56A
chains in the Genus database with same CATH superfamily
1MOPA 3AG5A 2I52A 1IHOA 4MUGA 5EXCA 3COZA 3IMEA 3IODA 2G5ZA 3IMGA 4MUKA 3COVA 2GR8A 3UY4A 2A86A 4MUEA 4G5YA 3CFHL 4FZJA 3IVGA 2IECA 2X3FA 3ISJA 1N2IA 2A52A 2G3DA 3MUEA 3IUEA 5KWVA 5G2FA 1UFVA 4EFKA 1N2GA 2RETA 3MXTA 4G5FA 4DDKA 4MUIA 3Q12A 4MULA 3CI0K 3EMOA 3N8HA 4MUHA 4MUNA 2A54A 2G16A 3HL6A 3UK2A 1V8FA 2LMEA 3Q10A 1N2JA 3IOCA 3CFFL 3LF4A 2A7XA 3IOEA 4BHRA 5BW0B 2A88A 2A50A 4IXJA 3INNA 3COYA 4DDHA 4EF6A 1N2EA 2A84A 4MUFA 3IMCA 4DDMA 3IVCA 3COWA 2A56A 2GW4A 3IUBA 3QTTA 3IVXA 3UA0A 3CFAL 4MUJA 3IOBA 2OGFA 3LE8A 3CI0I 1N2BA 2G2SA 4DE5A 2A53A 2GR7A 2EJCA 1N2OA 1N2HA 3AG6A 3CFIA 4MQ6A 5HG0A
chains in the Genus database with same CATH topology
1MOPA 3AG5A 1IHOA 4MUGA 5EXCA 3COZA 3IMEA 3IODA 2G5ZA 3IMGA 4MUKA 3COVA 3UY4A 2A86A 4MUEA 4G5YA 3CFHL 4FZJA 3IVGA 2X3FA 3ISJA 1N2IA 2A52A 2G3DA 3MUEA 3IUEA 5KWVA 5G2FA 1UFVA 4EFKA 1N2GA 3MXTA 4G5FA 4DDKA 4MUIA 3Q12A 4MULA 3N8HA 4MUHA 4MUNA 2A54A 2G16A 3HL6A 3UK2A 1V8FA 3Q10A 1N2JA 3CFFL 3LF4A 2A7XA 3IOEA 4BHRA 2A88A 2A50A 4IXJA 3INNA 3COYA 4DDHA 4EF6A 1N2EA 2A84A 4MUFA 3IMCA 4DDMA 3IVCA 3COWA 2A56A 2GW4A 3IUBA 3QTTA 3IVXA 3UA0A 3CFAL 4MUJA 3IOBA 3LE8A 1N2BA 2G2SA 4DE5A 2A53A 2EJCA 1N2OA 1N2HA 3AG6A 3IOCA 4MQ6A 5HG0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2A54 A;  2G16 A;  2A52 A;  2G3D A;  2GW4 A;  2A50 A;  3CFF L;  2G2S A;  5EXC A;  3CFH L;  3LF4 A;  2G5Z A;  2A53 A;  3CFA L;  2A56 A; 
#chains in the Genus database with same CATH topology
 1MOP A;  3AG5 A;  2I52 A;  1IHO A;  4MUG A;  5EXC A;  3COZ A;  3IME A;  3IOD A;  2G5Z A;  3IMG A;  4MUK A;  3COV A;  2GR8 A;  3UY4 A;  2A86 A;  4MUE A;  4G5Y A;  3CFH L;  4FZJ A;  3IVG A;  2IEC A;  2X3F A;  3ISJ A;  1N2I A;  2A52 A;  2G3D A;  3MUE A;  3IUE A;  5KWV A;  5G2F A;  1UFV A;  4EFK A;  1N2G A;  2RET A;  3MXT A;  4G5F A;  4DDK A;  4MUI A;  3Q12 A;  4MUL A;  3CI0 K;  3EMO A;  3N8H A;  4MUH A;  4MUN A;  2A54 A;  2G16 A;  3HL6 A;  3UK2 A;  1V8F A;  2LME A;  3Q10 A;  1N2J A;  3IOC A;  3CFF L;  3LF4 A;  2A7X A;  3IOE A;  4BHR A;  5BW0 B;  2A88 A;  2A50 A;  4IXJ A;  3INN A;  3COY A;  4DDH A;  4EF6 A;  1N2E A;  2A84 A;  4MUF A;  3IMC A;  4DDM A;  3IVC A;  3COW A;  2A56 A;  2GW4 A;  3IUB A;  3QTT A;  3IVX A;  3UA0 A;  3CFA L;  4MUJ A;  3IOB A;  2OGF A;  3LE8 A;  3CI0 I;  1N2B A;  2G2S A;  4DE5 A;  2A53 A;  2GR7 A;  2EJC A;  1N2O A;  1N2H A;  3AG6 A;  3CFI A;  4MQ6 A;  5HG0 A; 
#chains in the Genus database with same CATH homology
 1MOP A;  3AG5 A;  1IHO A;  4MUG A;  5EXC A;  3COZ A;  3IME A;  3IOD A;  2G5Z A;  3IMG A;  4MUK A;  3COV A;  3UY4 A;  2A86 A;  4MUE A;  4G5Y A;  3CFH L;  4FZJ A;  3IVG A;  2X3F A;  3ISJ A;  1N2I A;  2A52 A;  2G3D A;  3MUE A;  3IUE A;  5KWV A;  5G2F A;  1UFV A;  4EFK A;  1N2G A;  3MXT A;  4G5F A;  4DDK A;  4MUI A;  3Q12 A;  4MUL A;  3N8H A;  4MUH A;  4MUN A;  2A54 A;  2G16 A;  3HL6 A;  3UK2 A;  1V8F A;  3Q10 A;  1N2J A;  3CFF L;  3LF4 A;  2A7X A;  3IOE A;  4BHR A;  2A88 A;  2A50 A;  4IXJ A;  3INN A;  3COY A;  4DDH A;  4EF6 A;  1N2E A;  2A84 A;  4MUF A;  3IMC A;  4DDM A;  3IVC A;  3COW A;  2A56 A;  2GW4 A;  3IUB A;  3QTT A;  3IVX A;  3UA0 A;  3CFA L;  4MUJ A;  3IOB A;  3LE8 A;  1N2B A;  2G2S A;  4DE5 A;  2A53 A;  2EJC A;  1N2O A;  1N2H A;  3AG6 A;  3IOC A;  4MQ6 A;  5HG0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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