2GC4B

Structural comparison of the oxidized ternary electron transfer complex of methylamine dehydrogenase, amicyanin and cytochrome c551i from paracoccus denitrificans with the substrate-reduced, copper free complex at 1.9 a resolution.
Total Genus 30
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
Knots found
sequence length
125
structure length
124
Chain Sequence
TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase, electron transport
molecule keywords Methylamine dehydrogenase heavy chain
publication title Structural comparison of the oxidized ternary electron transfer complex of methylamine dehydrogenase, amicyanin and cytochrome c551i from Paracoccus denitrificans with the substrate-reduced, copper free complex at 1.9 A resolution.
rcsb
total genus 30
structure length 124
sequence length 125
chains with identical sequence F, J, N
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 2006-03-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2gc4B00
2OK6D 4FANC 2IAAB 4FA5C 2H47B 3SLEC 3C75L 3ORVC 2GC7B 4K3IC 3RMZC 2AH0D 4FA4C 4FA9C 3RLMC 3PXTC 1MG3B 1MDAL 2HKRD 3SWSC 2OJYD 2BBKL 3SVWC 3L4OC 2HXCD 2J57K 3RN0C 2AGLD 4FB1C 2OK4D 4L1QC 4FA1C 2IUQD 2J56L 2I0RD 1MAFL 3L4MC 4FAVC 1MAEL 4L3HC 2AH1D 2OIZD 2HJ4D 2HJBD 2IUPD 3SJLC 4O1QC 2AGWD 2H3XB 2Q7QD 2MADL 2MTAL 2GC4B 2AGXD 2AGZD 2I0SD 2IUVD 3RN1C 4Y5RC 3PXWC 3PXSC 2IURD 4L3GC 2I0TD 2AGYD 2J55L 3SXTC 1MG2B 2HKMD
chains in the Genus database with same CATH superfamily
2OK6D 4FANC 2IAAB 4FA5C 2H47B 3SLEC 3C75L 3ORVC 2GC7B 4K3IC 3RMZC 2AH0D 4FA4C 4FA9C 3RLMC 3PXTC 1MG3B 1MDAL 2HKRD 3SWSC 2OJYD 2BBKL 3SVWC 3L4OC 2HXCD 2J57K 3RN0C 2AGLD 4FB1C 2OK4D 4L1QC 4FA1C 2IUQD 2J56L 2I0RD 1MAFL 3L4MC 4FAVC 1MAEL 4L3HC 2AH1D 2OIZD 2HJ4D 2HJBD 2IUPD 3SJLC 4O1QC 2AGWD 2H3XB 2Q7QD 2MADL 2MTAL 2GC4B 2AGXD 2AGZD 2I0SD 2IUVD 3RN1C 4Y5RC 3PXWC 3PXSC 2IURD 4L3GC 2I0TD 2AGYD 2J55L 3SXTC 1MG2B 2HKMD
chains in the Genus database with same CATH topology
2OK6D 4FANC 2IAAB 4FA5C 2H47B 3SLEC 3C75L 3ORVC 2GC7B 4K3IC 3RMZC 2AH0D 4FA4C 4FA9C 3RLMC 3PXTC 1MG3B 1MDAL 2HKRD 3SWSC 2OJYD 2BBKL 3SVWC 3L4OC 2HXCD 2J57K 3RN0C 2AGLD 4FB1C 2OK4D 4L1QC 4FA1C 2IUQD 2J56L 2I0RD 1MAFL 3L4MC 4FAVC 1MAEL 4L3HC 2AH1D 2OIZD 2HJ4D 2HJBD 2IUPD 3SJLC 4O1QC 2AGWD 2H3XB 2Q7QD 2MADL 2MTAL 2GC4B 2AGXD 2AGZD 2I0SD 2IUVD 3RN1C 4Y5RC 3PXWC 3PXSC 2IURD 4L3GC 2I0TD 2AGYD 2J55L 3SXTC 1MG2B 2HKMD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OK6 D;  4FAN C;  2IAA B;  4FA5 C;  2H47 B;  3SLE C;  3C75 L;  3ORV C;  2GC7 B;  4K3I C;  3RMZ C;  2AH0 D;  4FA4 C;  4FA9 C;  3RLM C;  3PXT C;  1MG3 B;  1MDA L;  2HKR D;  3SWS C;  2OJY D;  2BBK L;  3SVW C;  3L4O C;  2HXC D;  2J57 K;  3RN0 C;  2AGL D;  4FB1 C;  2OK4 D;  4L1Q C;  4FA1 C;  2IUQ D;  2J56 L;  2I0R D;  1MAF L;  3L4M C;  4FAV C;  1MAE L;  4L3H C;  2AH1 D;  2OIZ D;  2HJ4 D;  2HJB D;  2IUP D;  3SJL C;  4O1Q C;  2AGW D;  2H3X B;  2Q7Q D;  2MAD L;  2MTA L;  2GC4 B;  2AGX D;  2AGZ D;  2I0S D;  2IUV D;  3RN1 C;  4Y5R C;  3PXW C;  3PXS C;  2IUR D;  4L3G C;  2I0T D;  2AGY D;  2J55 L;  3SXT C;  1MG2 B;  2HKM D; 
#chains in the Genus database with same CATH topology
 2OK6 D;  4FAN C;  2IAA B;  4FA5 C;  2H47 B;  3SLE C;  3C75 L;  3ORV C;  2GC7 B;  4K3I C;  3RMZ C;  2AH0 D;  4FA4 C;  4FA9 C;  3RLM C;  3PXT C;  1MG3 B;  1MDA L;  2HKR D;  3SWS C;  2OJY D;  2BBK L;  3SVW C;  3L4O C;  2HXC D;  2J57 K;  3RN0 C;  2AGL D;  4FB1 C;  2OK4 D;  4L1Q C;  4FA1 C;  2IUQ D;  2J56 L;  2I0R D;  1MAF L;  3L4M C;  4FAV C;  1MAE L;  4L3H C;  2AH1 D;  2OIZ D;  2HJ4 D;  2HJB D;  2IUP D;  3SJL C;  4O1Q C;  2AGW D;  2H3X B;  2Q7Q D;  2MAD L;  2MTA L;  2GC4 B;  2AGX D;  2AGZ D;  2I0S D;  2IUV D;  3RN1 C;  4Y5R C;  3PXW C;  3PXS C;  2IUR D;  4L3G C;  2I0T D;  2AGY D;  2J55 L;  3SXT C;  1MG2 B;  2HKM D; 
#chains in the Genus database with same CATH homology
 2OK6 D;  4FAN C;  2IAA B;  4FA5 C;  2H47 B;  3SLE C;  3C75 L;  3ORV C;  2GC7 B;  4K3I C;  3RMZ C;  2AH0 D;  4FA4 C;  4FA9 C;  3RLM C;  3PXT C;  1MG3 B;  1MDA L;  2HKR D;  3SWS C;  2OJY D;  2BBK L;  3SVW C;  3L4O C;  2HXC D;  2J57 K;  3RN0 C;  2AGL D;  4FB1 C;  2OK4 D;  4L1Q C;  4FA1 C;  2IUQ D;  2J56 L;  2I0R D;  1MAF L;  3L4M C;  4FAV C;  1MAE L;  4L3H C;  2AH1 D;  2OIZ D;  2HJ4 D;  2HJB D;  2IUP D;  3SJL C;  4O1Q C;  2AGW D;  2H3X B;  2Q7Q D;  2MAD L;  2MTA L;  2GC4 B;  2AGX D;  2AGZ D;  2I0S D;  2IUV D;  3RN1 C;  4Y5R C;  3PXW C;  3PXS C;  2IUR D;  4L3G C;  2I0T D;  2AGY D;  2J55 L;  3SXT C;  1MG2 B;  2HKM D; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...