2GDXA

Solution structure of the b. brevis tycc3-pcp in h-state
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
85
structure length
85
Chain Sequence
MGVTEAQYVAPTNAVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVATRS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase/transport protein
molecule keywords Tyrocidine synthetase III
publication title Conformational switches modulate protein interactions in peptide antibiotic synthetases
pubmed doi rcsb
source organism Brevibacillus parabrevis
total genus 15
structure length 85
sequence length 85
ec nomenclature
pdb deposition date 2006-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 2gdxA00
2L4BA 2GDWA 2FACA 4R0MA 2JU1A 2AF8A 2EHSA 2N98A 1KLPA 2KOOA 3RG2A 3GZLA 3GZMA 2L22A 1DNYA 2FHSC 2CGQA 2CQ8A 2LMLA 2MF4A 2KG8A 2FADA 2AFDA 2K92A 1L0HA 1HQBA 5KP8B 2KW2A 2KOQA 2MR7A 5HV8A 2CNRA 2FVFA 3CE7A 5KP6B 2LOLA 2N6YA 2FQ1A 2LPKA 1DV5A 2LL8A 1HY8A 4BPGA 2KGEA 4H2WC 2KGCA 2M5RA 2KGDA 4IZ6A 2VSQA 2FVEA 2KG9A 2AVAA 2KOSA 2KG6A 2XZ0D 2DNWA 2MD9A 4MRTC 4H2XC 2KOPA 5HVCA 1X3OA 2K2QA 3NY7B 2XZ1C 2ROQA 2K94A 4BPFA 2JGPA 2MVUA 2LIWA 2N5HA 4H2YC 4NEOA 2GDYA 2JU2A 4PWVB 2FVAA 4CA3A 4PXHB 1OR5A 1VKUA 3EJDA 5EJDA 2FQ0A 2LIUA 2N5IA 3EJBA 2GDXA 1T8KA 2KWLA 2CG5B 2JQ4A 2KORA 1NQ4A 1ACPA 2AFEA 2LKIA 2K0YA 2N6ZA 2MVVA 2K0XA 2FAEA 3EJEA 2QNWA 2EHTA 2L0QA 2MY5A 2MR8A 2PNGA 5KP7B 2FQ2A 4BPHA 3LMOA 2KR5A 2LTEA 4HKGA 2X2BA 1L0IA 2L9FA 1F80D 4DG9A 1AF8A 2K93A 5CZDB 2N50A 2KGAA
chains in the Genus database with same CATH superfamily
1VQPP 1K9MQ 3CC7P 1KC8Q 2N98A 4U0EA 2PEKA 4F37A 2OTLP 2GZJA 2VLNA 1E6JP 2LMLA 3CD6P 1Q86Q 2XT1A 2FADA 2M8LA 2AFDA 2K92A 3E2DA 2WPTA 2FVFA 4COCA 2LOLA 2N6YA 3CCEP 2LPKA 3CCSP 2KGDA 4IZ6A 2FVEA 2JO0A 2PEJA 2KG6A 1K8AQ 3G1GA 1KD1Q 5I4TG 3G21A 3CC2P 5F2OA 3DS1A 1M6NA 2K94A 4BPFA 1RO0A 3CCJP 4NEOA 1Q7YQ 2FVAA 4CA3A 4PXHB 1QVFO 1ZMBA 5EW5E 2XXMA 5JPAA 3CCLP 1K30A 1FR2A 2GDXA 3CC4P 1VQ9P 1N8RQ 2KORA 1NQ4A 2Z46A 2K0XA 3EJEA 2PEMA 2L0QA 2MY5A 1VQLP 5HGOA 5KP7B 2FQ2A 3G71P 2GZFA 2L9FA 4DG9A 2DGYA 1AF8A 3CXCO 1IUQA 5CZDB 1VQKP 2EIAA 2JYLA 2PENA 2L4BA 2E1MA 2GDWA 2FACA 4R0MA 1EOQA 2EHSA 2KOOA 1UJZA 3GZLA 1M90Q 1AYIA 3CMAP 2CWOA 2VLOA 2OARA 1EMVA 3RG6C 1L0HA 2K5XA 1HQBA 2KW2A 2MR7A 2CNRA 5KP6B 3I56P 3DS2A 3G4SP 2LL8A 3VRLC 3CCMP 1RNIA 2QEXP 2VSQA 4COPA 1VQOP 2Z44A 4WYMA 1A8OA 2DNWA 3HYBA 2PEIA 3G1IA 3MGEA 3I55P 3NY7B 5BS1A 2GZGA 2GZIA 2N5HA 2VLPA 2JU2A 5HGMA 1OR5A 1VKUA 2XV6A 2LIUA 5HGLA 1T8KA 1Z6MA 1UNKA 2CG5B 5F2KA 2JQ4A 2AFEA 2LKIA 3G26A 1YITP 2P9XA 3CCQP 4U0FA 3DPHA 2FAEA 1VQ7P 2EHTA 1VQ8P 2PEQA 2M8PA 4QNBA 1IMQA 3WBHA 4BPHA 3LMOA 1K73Q 2LTEA 1AUMA 2X2BA 1L0IA 1Q82Q 1QVGO 2GYKA 3G0VA 2OTJP 2AF8A 2M8NA 3H47A 2ERHA 1KLPA 3GZMA 3B5IA 1DNYA 2FHSC 2QA4P 2CGQA 1VQMP 2CQ8A 2MF4A 2KG8A 3GJNA 7CEIA 4IPYA 3OW2O 5HV8A 3CE7A 1S72P 1GXGA 2KODA 1YIJP 1YJNP 3DS3A 2FQ1A 2K0DX 4XRQA 3B4QA 2M5RA 3GKLC 1YI2P 2KG9A 2AVAA 1A43A 5DCKA 3G28A 2BHVA 1M74A 2MD9A 4MRTC 1ZNVA 5HVCA 3H0DA 3P05A 3CCVP 3DS5A 2LF4A 2K2QA 1D1DA 2XZ1C 2ROQA 2JGPA 2MVUA 2LIWA 4U0CA 2ONTA 2PY8A 3CCUP 1M1KQ 3EJDA 5EJDA 3U43A 2VLQA 5HGNA 2PEOA 2KWLA 1BXIA 4GR6A 1ACPA 2MVVA 4XFXA 2QNWA 3M1MA 3LRYA 1GPJA 5F2NA 1NJIQ 1IMPA 5BS2A 4PH1A 2BUOA 3HZQA 1RO2A 2KR5A 2JB0A 1F80D 2K93A 3CCRP 2N50A 2KGAA 3G29A 3DTJA 4XFYA 2EFJA 1VQ5P 2JU1A 3RG2A 2L22A 2NO8A 4U0AA 1CEIA 5KP8B 1VQ6P 2KOQA 1W2BO 1QRJA 1DV5A 1HY8A 4BPGA 1YJ9P 2KGEA 4H2WC 4M0IA 2KGCA 2L6EA 2KOSA 2XZ0D 3CPWO 4H2XC 2KOPA 4GR2A 4U0DA 1X3OA 1EIAA 4QKOA 4UHPB 2Z45A 4H2YC 1M6EX 2GDYA 4PWVB 1YJWP 2GZEA 2FQ0A 3NTEA 2N5IA 1E0HA 3EJBA 1YHQP 2JAZA 1BAJA 4XROA 3CMEP 1JJ2O 1VQ4P 2K0YA 2N6ZA 3H4EA 1MZ8A 2EG5A 4U0BA 1GXHA 2JBGA 3Q20A 2MR8A 2PNGA 1VQNP 1Q81Q 2JYGA 4HKGA 3DS0A 1VHNA 3G6EP 4XFZA 3DS4A 4PH0A 1KQSO
chains in the Genus database with same CATH topology
2L4BA 2GDWA 2FACA 4R0MA 2JU1A 2AF8A 2EHSA 2N98A 1KLPA 2KOOA 3RG2A 3GZLA 3GZMA 2L22A 1DNYA 2FHSC 2CGQA 2CQ8A 2LMLA 2MF4A 2KG8A 2FADA 2AFDA 2K92A 1L0HA 1HQBA 5KP8B 2KW2A 2KOQA 2MR7A 5HV8A 2CNRA 2FVFA 3CE7A 5KP6B 2LOLA 2N6YA 2FQ1A 2LPKA 1DV5A 2LL8A 1HY8A 4BPGA 2KGEA 4H2WC 2KGCA 2M5RA 2KGDA 4IZ6A 2VSQA 2FVEA 2KG9A 2AVAA 2KOSA 2KG6A 2XZ0D 2DNWA 2MD9A 4MRTC 4H2XC 2KOPA 5HVCA 1X3OA 2K2QA 3NY7B 2XZ1C 2ROQA 2K94A 4BPFA 2JGPA 2MVUA 2LIWA 2N5HA 4H2YC 4NEOA 2GDYA 2JU2A 4PWVB 2FVAA 4CA3A 4PXHB 1OR5A 1VKUA 3EJDA 5EJDA 2FQ0A 2LIUA 2N5IA 3EJBA 2GDXA 1T8KA 2KWLA 2CG5B 2JQ4A 2KORA 1NQ4A 1ACPA 2AFEA 2LKIA 2K0YA 2N6ZA 2MVVA 2K0XA 2FAEA 3EJEA 2QNWA 2EHTA 2L0QA 2MY5A 2MR8A 2PNGA 5KP7B 2FQ2A 4BPHA 3LMOA 2KR5A 2LTEA 4HKGA 2X2BA 1L0IA 2L9FA 1F80D 4DG9A 1AF8A 2K93A 5CZDB 2N50A 2KGAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2L4B A;  2GDW A;  2FAC A;  4R0M A;  2JU1 A;  2AF8 A;  2EHS A;  2N98 A;  1KLP A;  2KOO A;  3RG2 A;  3GZL A;  3GZM A;  2L22 A;  1DNY A;  2FHS C;  2CGQ A;  2CQ8 A;  2LML A;  2MF4 A;  2KG8 A;  2FAD A;  2AFD A;  2K92 A;  1L0H A;  1HQB A;  5KP8 B;  2KW2 A;  2KOQ A;  2MR7 A;  5HV8 A;  2CNR A;  2FVF A;  3CE7 A;  5KP6 B;  2LOL A;  2N6Y A;  2FQ1 A;  2LPK A;  1DV5 A;  2LL8 A;  1HY8 A;  4BPG A;  2KGE A;  4H2W C;  2KGC A;  2M5R A;  2KGD A;  4IZ6 A;  2VSQ A;  2FVE A;  2KG9 A;  2AVA A;  2KOS A;  2KG6 A;  2XZ0 D;  2DNW A;  2MD9 A;  4MRT C;  4H2X C;  2KOP A;  5HVC A;  1X3O A;  2K2Q A;  3NY7 B;  2XZ1 C;  2ROQ A;  2K94 A;  4BPF A;  2JGP A;  2MVU A;  2LIW A;  2N5H A;  4H2Y C;  4NEO A;  2GDY A;  2JU2 A;  4PWV B;  2FVA A;  4CA3 A;  4PXH B;  1OR5 A;  1VKU A;  3EJD A;  5EJD A;  2FQ0 A;  2LIU A;  2N5I A;  3EJB A;  2GDX A;  1T8K A;  2KWL A;  2CG5 B;  2JQ4 A;  2KOR A;  1NQ4 A;  1ACP A;  2AFE A;  2LKI A;  2K0Y A;  2N6Z A;  2MVV A;  2K0X A;  2FAE A;  3EJE A;  2QNW A;  2EHT A;  2L0Q A;  2MY5 A;  2MR8 A;  2PNG A;  5KP7 B;  2FQ2 A;  4BPH A;  3LMO A;  2KR5 A;  2LTE A;  4HKG A;  2X2B A;  1L0I A;  2L9F A;  1F80 D;  4DG9 A;  1AF8 A;  2K93 A;  5CZD B;  2N50 A;  2KGA A; 
#chains in the Genus database with same CATH topology
 1VQP P;  1K9M Q;  3CC7 P;  1KC8 Q;  2N98 A;  4U0E A;  2PEK A;  4F37 A;  2OTL P;  2GZJ A;  2VLN A;  1E6J P;  2LML A;  3CD6 P;  1Q86 Q;  2XT1 A;  2FAD A;  2M8L A;  2AFD A;  2K92 A;  3E2D A;  2WPT A;  2FVF A;  4COC A;  2LOL A;  2N6Y A;  3CCE P;  2LPK A;  3CCS P;  2KGD A;  4IZ6 A;  2FVE A;  2JO0 A;  2PEJ A;  2KG6 A;  1K8A Q;  3G1G A;  1KD1 Q;  5I4T G;  3G21 A;  3CC2 P;  5F2O A;  3DS1 A;  1M6N A;  2K94 A;  4BPF A;  1RO0 A;  3CCJ P;  4NEO A;  1Q7Y Q;  2FVA A;  4CA3 A;  4PXH B;  1QVF O;  1ZMB A;  5EW5 E;  2XXM A;  5JPA A;  3CCL P;  1K30 A;  1FR2 A;  2GDX A;  3CC4 P;  1VQ9 P;  1N8R Q;  2KOR A;  1NQ4 A;  2Z46 A;  2K0X A;  3EJE A;  2PEM A;  2L0Q A;  2MY5 A;  1VQL P;  5HGO A;  5KP7 B;  2FQ2 A;  3G71 P;  2GZF A;  2L9F A;  4DG9 A;  2DGY A;  1AF8 A;  3CXC O;  1IUQ A;  5CZD B;  1VQK P;  2EIA A;  2JYL A;  2PEN A;  2L4B A;  2E1M A;  2GDW A;  2FAC A;  4R0M A;  1EOQ A;  2EHS A;  2KOO A;  1UJZ A;  3GZL A;  1M90 Q;  1AYI A;  3CMA P;  2CWO A;  2VLO A;  2OAR A;  1EMV A;  3RG6 C;  1L0H A;  2K5X A;  1HQB A;  2KW2 A;  2MR7 A;  2CNR A;  5KP6 B;  3I56 P;  3DS2 A;  3G4S P;  2LL8 A;  3VRL C;  3CCM P;  1RNI A;  2QEX P;  2VSQ A;  4COP A;  1VQO P;  2Z44 A;  4WYM A;  1A8O A;  2DNW A;  3HYB A;  2PEI A;  3G1I A;  3MGE A;  3I55 P;  3NY7 B;  5BS1 A;  2GZG A;  2GZI A;  2N5H A;  2VLP A;  2JU2 A;  5HGM A;  1OR5 A;  1VKU A;  2XV6 A;  2LIU A;  5HGL A;  1T8K A;  1Z6M A;  1UNK A;  2CG5 B;  5F2K A;  2JQ4 A;  2AFE A;  2LKI A;  3G26 A;  1YIT P;  2P9X A;  3CCQ P;  4U0F A;  3DPH A;  2FAE A;  1VQ7 P;  2EHT A;  1VQ8 P;  2PEQ A;  2M8P A;  4QNB A;  1IMQ A;  3WBH A;  4BPH A;  3LMO A;  1K73 Q;  2LTE A;  1AUM A;  2X2B A;  1L0I A;  1Q82 Q;  1QVG O;  2GYK A;  3G0V A;  2OTJ P;  2AF8 A;  2M8N A;  3H47 A;  2ERH A;  1KLP A;  3GZM A;  3B5I A;  1DNY A;  2FHS C;  2QA4 P;  2CGQ A;  1VQM P;  2CQ8 A;  2MF4 A;  2KG8 A;  3GJN A;  7CEI A;  4IPY A;  3OW2 O;  5HV8 A;  3CE7 A;  1S72 P;  1GXG A;  2KOD A;  1YIJ P;  1YJN P;  3DS3 A;  2FQ1 A;  2K0D X;  4XRQ A;  3B4Q A;  2M5R A;  3GKL C;  1YI2 P;  2KG9 A;  2AVA A;  1A43 A;  5DCK A;  3G28 A;  2BHV A;  1M74 A;  2MD9 A;  4MRT C;  1ZNV A;  5HVC A;  3H0D A;  3P05 A;  3CCV P;  3DS5 A;  2LF4 A;  2K2Q A;  1D1D A;  2XZ1 C;  2ROQ A;  2JGP A;  2MVU A;  2LIW A;  4U0C A;  2ONT A;  2PY8 A;  3CCU P;  1M1K Q;  3EJD A;  5EJD A;  3U43 A;  2VLQ A;  5HGN A;  2PEO A;  2KWL A;  1BXI A;  4GR6 A;  1ACP A;  2MVV A;  4XFX A;  2QNW A;  3M1M A;  3LRY A;  1GPJ A;  5F2N A;  1NJI Q;  1IMP A;  5BS2 A;  4PH1 A;  2BUO A;  3HZQ A;  1RO2 A;  2KR5 A;  2JB0 A;  1F80 D;  2K93 A;  3CCR P;  2N50 A;  2KGA A;  3G29 A;  3DTJ A;  4XFY A;  2EFJ A;  1VQ5 P;  2JU1 A;  3RG2 A;  2L22 A;  2NO8 A;  4U0A A;  1CEI A;  5KP8 B;  1VQ6 P;  2KOQ A;  1W2B O;  1QRJ A;  1DV5 A;  1HY8 A;  4BPG A;  1YJ9 P;  2KGE A;  4H2W C;  4M0I A;  2KGC A;  2L6E A;  2KOS A;  2XZ0 D;  3CPW O;  4H2X C;  2KOP A;  4GR2 A;  4U0D A;  1X3O A;  1EIA A;  4QKO A;  4UHP B;  2Z45 A;  4H2Y C;  1M6E X;  2GDY A;  4PWV B;  1YJW P;  2GZE A;  2FQ0 A;  3NTE A;  2N5I A;  1E0H A;  3EJB A;  1YHQ P;  2JAZ A;  1BAJ A;  4XRO A;  3CME P;  1JJ2 O;  1VQ4 P;  2K0Y A;  2N6Z A;  3H4E A;  1MZ8 A;  2EG5 A;  4U0B A;  1GXH A;  2JBG A;  3Q20 A;  2MR8 A;  2PNG A;  1VQN P;  1Q81 Q;  2JYG A;  4HKG A;  3DS0 A;  1VHN A;  3G6E P;  4XFZ A;  3DS4 A;  4PH0 A;  1KQS O; 
#chains in the Genus database with same CATH homology
 2L4B A;  2GDW A;  2FAC A;  4R0M A;  2JU1 A;  2AF8 A;  2EHS A;  2N98 A;  1KLP A;  2KOO A;  3RG2 A;  3GZL A;  3GZM A;  2L22 A;  1DNY A;  2FHS C;  2CGQ A;  2CQ8 A;  2LML A;  2MF4 A;  2KG8 A;  2FAD A;  2AFD A;  2K92 A;  1L0H A;  1HQB A;  5KP8 B;  2KW2 A;  2KOQ A;  2MR7 A;  5HV8 A;  2CNR A;  2FVF A;  3CE7 A;  5KP6 B;  2LOL A;  2N6Y A;  2FQ1 A;  2LPK A;  1DV5 A;  2LL8 A;  1HY8 A;  4BPG A;  2KGE A;  4H2W C;  2KGC A;  2M5R A;  2KGD A;  4IZ6 A;  2VSQ A;  2FVE A;  2KG9 A;  2AVA A;  2KOS A;  2KG6 A;  2XZ0 D;  2DNW A;  2MD9 A;  4MRT C;  4H2X C;  2KOP A;  5HVC A;  1X3O A;  2K2Q A;  3NY7 B;  2XZ1 C;  2ROQ A;  2K94 A;  4BPF A;  2JGP A;  2MVU A;  2LIW A;  2N5H A;  4H2Y C;  4NEO A;  2GDY A;  2JU2 A;  4PWV B;  2FVA A;  4CA3 A;  4PXH B;  1OR5 A;  1VKU A;  3EJD A;  5EJD A;  2FQ0 A;  2LIU A;  2N5I A;  3EJB A;  2GDX A;  1T8K A;  2KWL A;  2CG5 B;  2JQ4 A;  2KOR A;  1NQ4 A;  1ACP A;  2AFE A;  2LKI A;  2K0Y A;  2N6Z A;  2MVV A;  2K0X A;  2FAE A;  3EJE A;  2QNW A;  2EHT A;  2L0Q A;  2MY5 A;  2MR8 A;  2PNG A;  5KP7 B;  2FQ2 A;  4BPH A;  3LMO A;  2KR5 A;  2LTE A;  4HKG A;  2X2B A;  1L0I A;  2L9F A;  1F80 D;  4DG9 A;  1AF8 A;  2K93 A;  5CZD B;  2N50 A;  2KGA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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