2GGLA

The mutant a222c of agrobacterium radiobacter n-carbamoyl-d-amino acid amidohydrolase
Total Genus 98
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
302
structure length
302
Chain Sequence
RQMILAVGQQGPIARAETREQVVGRLLDMLTNAASRGVNFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPETWRVMGLKGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQCGSYQNGAWSAAAGKVGMEEGCMLLGHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELREHIFNFKAHRQPQHYGLIAEF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords N-carbamoyl-D-amino acid amidohydrolase
publication title Structure-Stability-Activity Relationship in Covalently Cross-linked N-Carbamoyl d-Amino acid Amidohydrolase and N-Acylamino acid Racemase.
pubmed doi rcsb
source organism Agrobacterium tumefaciens
total genus 98
structure length 302
sequence length 302
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.77: N-carbamoyl-D-amino-acid hydrolase.
pdb deposition date 2006-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 2gglA00
1UF7A 5H8IA 3N05A 3KI8A 5JQNA 2UXYA 2VHHA 3DLAA 4F4HA 3ILVA 3IW3A 4IZWA 5H8KA 3IVZA 1FO6A 3P8KA 3HKXA 2E11A 2DYVA 2GGKA 2GGLA 2VHIA 4H5UA 5KHAA 2W1VA 1F89A 3KLCA 4LF0A 3SEZA 2PLQA 4HG5A 2E2KA 4GYNA 3SEQA 3WUYA 4GYLA 4HGDA 4IZVA 4IZSA 3SZGA 4IZTA 3SDBA 4CYGA 1UF8A 4HG3A 1UF5A 2DYUA 1ERZA 1UF4A 1EMSA 4CYFA 5H8JA 3SYTA 4IZUA 4CYYA 1J31A 4KZFA 2E2LA 5H8LA
chains in the Genus database with same CATH superfamily
1UF7A 5H8IA 3N05A 3KI8A 5JQNA 2UXYA 2VHHA 3DLAA 4F4HA 3ILVA 3IW3A 4IZWA 5H8KA 3IVZA 1FO6A 3P8KA 3HKXA 2E11A 2DYVA 2GGKA 2GGLA 2VHIA 4H5UA 5KHAA 2W1VA 1F89A 3KLCA 4LF0A 3SEZA 2PLQA 4HG5A 2E2KA 4GYNA 3SEQA 3WUYA 4GYLA 4HGDA 4IZVA 4IZSA 3SZGA 4IZTA 3SDBA 4CYGA 1UF8A 4HG3A 1UF5A 2DYUA 1ERZA 1UF4A 1EMSA 4CYFA 5H8JA 3SYTA 4IZUA 4CYYA 1J31A 4KZFA 2E2LA 5H8LA
chains in the Genus database with same CATH topology
1UF7A 5H8IA 3N05A 3KI8A 5JQNA 2UXYA 2VHHA 3DLAA 4F4HA 3ILVA 3IW3A 4IZWA 5H8KA 3IVZA 1FO6A 3P8KA 3HKXA 2E11A 2DYVA 2GGKA 2GGLA 2VHIA 4H5UA 5KHAA 2W1VA 1F89A 3KLCA 4LF0A 3SEZA 2PLQA 4HG5A 2E2KA 4GYNA 3SEQA 3WUYA 4GYLA 4HGDA 4IZVA 4IZSA 3SZGA 4IZTA 3SDBA 4CYGA 1UF8A 4HG3A 1UF5A 2DYUA 1ERZA 1UF4A 1EMSA 4CYFA 5H8JA 3SYTA 4IZUA 4CYYA 1J31A 4KZFA 2E2LA 5H8LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UF7 A;  5H8I A;  3N05 A;  3KI8 A;  5JQN A;  2UXY A;  2VHH A;  3DLA A;  4F4H A;  3ILV A;  3IW3 A;  4IZW A;  5H8K A;  3IVZ A;  1FO6 A;  3P8K A;  3HKX A;  2E11 A;  2DYV A;  2GGK A;  2GGL A;  2VHI A;  4H5U A;  5KHA A;  2W1V A;  1F89 A;  3KLC A;  4LF0 A;  3SEZ A;  2PLQ A;  4HG5 A;  2E2K A;  4GYN A;  3SEQ A;  3WUY A;  4GYL A;  4HGD A;  4IZV A;  4IZS A;  3SZG A;  4IZT A;  3SDB A;  4CYG A;  1UF8 A;  4HG3 A;  1UF5 A;  2DYU A;  1ERZ A;  1UF4 A;  1EMS A;  4CYF A;  5H8J A;  3SYT A;  4IZU A;  4CYY A;  1J31 A;  4KZF A;  2E2L A;  5H8L A; 
#chains in the Genus database with same CATH topology
 1UF7 A;  5H8I A;  3N05 A;  3KI8 A;  5JQN A;  2UXY A;  2VHH A;  3DLA A;  4F4H A;  3ILV A;  3IW3 A;  4IZW A;  5H8K A;  3IVZ A;  1FO6 A;  3P8K A;  3HKX A;  2E11 A;  2DYV A;  2GGK A;  2GGL A;  2VHI A;  4H5U A;  5KHA A;  2W1V A;  1F89 A;  3KLC A;  4LF0 A;  3SEZ A;  2PLQ A;  4HG5 A;  2E2K A;  4GYN A;  3SEQ A;  3WUY A;  4GYL A;  4HGD A;  4IZV A;  4IZS A;  3SZG A;  4IZT A;  3SDB A;  4CYG A;  1UF8 A;  4HG3 A;  1UF5 A;  2DYU A;  1ERZ A;  1UF4 A;  1EMS A;  4CYF A;  5H8J A;  3SYT A;  4IZU A;  4CYY A;  1J31 A;  4KZF A;  2E2L A;  5H8L A; 
#chains in the Genus database with same CATH homology
 1UF7 A;  5H8I A;  3N05 A;  3KI8 A;  5JQN A;  2UXY A;  2VHH A;  3DLA A;  4F4H A;  3ILV A;  3IW3 A;  4IZW A;  5H8K A;  3IVZ A;  1FO6 A;  3P8K A;  3HKX A;  2E11 A;  2DYV A;  2GGK A;  2GGL A;  2VHI A;  4H5U A;  5KHA A;  2W1V A;  1F89 A;  3KLC A;  4LF0 A;  3SEZ A;  2PLQ A;  4HG5 A;  2E2K A;  4GYN A;  3SEQ A;  3WUY A;  4GYL A;  4HGD A;  4IZV A;  4IZS A;  3SZG A;  4IZT A;  3SDB A;  4CYG A;  1UF8 A;  4HG3 A;  1UF5 A;  2DYU A;  1ERZ A;  1UF4 A;  1EMS A;  4CYF A;  5H8J A;  3SYT A;  4IZU A;  4CYY A;  1J31 A;  4KZF A;  2E2L A;  5H8L A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...