2GW4A

Crystal structure of stony coral fluorescent protein kaede, red form
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
61
structure length
61
Chain Sequence
PMSLIKPEMKIKLLMEGNVNGHQFVIEGDGKGHPFEGKQSMDLVVKEGAPLPFAYDILTTA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Luminescent protein
molecule keywords Kaede
publication title Crystallographic evidence for water-assisted photo-induced peptide cleavage in the stony coral fluorescent protein Kaede.
pubmed doi rcsb
source organism Trachyphyllia geoffroyi
total genus 8
structure length 61
sequence length 61
chains with identical sequence C
ec nomenclature
pdb deposition date 2006-05-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1300.40 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 Pantoate--beta-alanine Ligase; Chain: A,domain 2 2gw4A00
2G3DA 3CFHL 2A52A 2A54A 2G16A 3CFFL 2A50A 2GW4A 2A53A 3CFAL 3LF4A 2A56A 2G5ZA 2G2SA 5EXCA
chains in the Genus database with same CATH superfamily
3CI0K 3CI0I 1N2GA 3UK2A 1MOPA 3IVXA 4MUIA 3CFFL 4IXJA 4BHRA 3AG5A 5KWVA 2A54A 4G5YA 4DDKA 3IODA 3UY4A 3IOEA 3IVCA 3UA0A 3COVA 4G5FA 2GR8A 3HL6A 1N2OA 3INNA 3IUEA 4MUGA 3IMGA 3COWA 4MUJA 2A7XA 1UFVA 2I52A 4MUEA 4MUFA 2GW4A 5G2FA 3MUEA 2X3FA 4MQ6A 4MUHA 4DDMA 1N2IA 2A86A 2A56A 3CFIA 2EJCA 3MXTA 2G3DA 3ISJA 3COZA 4DDHA 3LE8A 2G5ZA 2G2SA 2A84A 1N2BA 2RETA 3AG6A 1N2HA 4MUKA 3IMEA 3CFAL 1N2EA 5BW0B 1V8FA 2A52A 3Q12A 4MUNA 2A50A 4EF6A 2A53A 3QTTA 3CFHL 3IOCA 3N8HA 3IOBA 2OGFA 4MULA 3EMOA 3Q10A 3IMCA 3LF4A 3COYA 5HG0A 2A88A 1N2JA 2G16A 2LMEA 4DE5A 3IVGA 4EFKA 3IUBA 1IHOA 4FZJA 2GR7A 2IECA 5EXCA
chains in the Genus database with same CATH topology
1N2GA 3UK2A 1MOPA 3IVXA 4MUIA 3CFFL 4IXJA 4BHRA 3AG5A 5KWVA 2A54A 4G5YA 4DDKA 3IODA 3UY4A 3IOEA 3IVCA 3UA0A 3COVA 4G5FA 3HL6A 1N2OA 3INNA 3IUEA 4MUGA 3IMGA 3COWA 4MUJA 2A7XA 1UFVA 4MUEA 4MUFA 2GW4A 5G2FA 3MUEA 2X3FA 4MQ6A 4MUHA 4DDMA 1N2IA 2A86A 2A56A 2EJCA 3MXTA 2G3DA 3ISJA 3COZA 4DDHA 3LE8A 2G5ZA 2G2SA 2A84A 1N2BA 3AG6A 1N2HA 4MUKA 3IMEA 3CFAL 1N2EA 1V8FA 2A52A 3Q12A 4MUNA 2A50A 4EF6A 2A53A 3QTTA 3CFHL 3IOCA 3N8HA 3IOBA 4MULA 3Q10A 3IMCA 3LF4A 3COYA 5HG0A 2A88A 1N2JA 2G16A 4DE5A 3IVGA 4EFKA 3IUBA 1IHOA 4FZJA 5EXCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2G3D A;  3CFH L;  2A52 A;  2A54 A;  2G16 A;  3CFF L;  2A50 A;  2GW4 A;  2A53 A;  3CFA L;  3LF4 A;  2A56 A;  2G5Z A;  2G2S A;  5EXC A; 
#chains in the Genus database with same CATH topology
 3CI0 K;  3CI0 I;  1N2G A;  3UK2 A;  1MOP A;  3IVX A;  4MUI A;  3CFF L;  4IXJ A;  4BHR A;  3AG5 A;  5KWV A;  2A54 A;  4G5Y A;  4DDK A;  3IOD A;  3UY4 A;  3IOE A;  3IVC A;  3UA0 A;  3COV A;  4G5F A;  2GR8 A;  3HL6 A;  1N2O A;  3INN A;  3IUE A;  4MUG A;  3IMG A;  3COW A;  4MUJ A;  2A7X A;  1UFV A;  2I52 A;  4MUE A;  4MUF A;  2GW4 A;  5G2F A;  3MUE A;  2X3F A;  4MQ6 A;  4MUH A;  4DDM A;  1N2I A;  2A86 A;  2A56 A;  3CFI A;  2EJC A;  3MXT A;  2G3D A;  3ISJ A;  3COZ A;  4DDH A;  3LE8 A;  2G5Z A;  2G2S A;  2A84 A;  1N2B A;  2RET A;  3AG6 A;  1N2H A;  4MUK A;  3IME A;  3CFA L;  1N2E A;  5BW0 B;  1V8F A;  2A52 A;  3Q12 A;  4MUN A;  2A50 A;  4EF6 A;  2A53 A;  3QTT A;  3CFH L;  3IOC A;  3N8H A;  3IOB A;  2OGF A;  4MUL A;  3EMO A;  3Q10 A;  3IMC A;  3LF4 A;  3COY A;  5HG0 A;  2A88 A;  1N2J A;  2G16 A;  2LME A;  4DE5 A;  3IVG A;  4EFK A;  3IUB A;  1IHO A;  4FZJ A;  2GR7 A;  2IEC A;  5EXC A; 
#chains in the Genus database with same CATH homology
 1N2G A;  3UK2 A;  1MOP A;  3IVX A;  4MUI A;  3CFF L;  4IXJ A;  4BHR A;  3AG5 A;  5KWV A;  2A54 A;  4G5Y A;  4DDK A;  3IOD A;  3UY4 A;  3IOE A;  3IVC A;  3UA0 A;  3COV A;  4G5F A;  3HL6 A;  1N2O A;  3INN A;  3IUE A;  4MUG A;  3IMG A;  3COW A;  4MUJ A;  2A7X A;  1UFV A;  4MUE A;  4MUF A;  2GW4 A;  5G2F A;  3MUE A;  2X3F A;  4MQ6 A;  4MUH A;  4DDM A;  1N2I A;  2A86 A;  2A56 A;  2EJC A;  3MXT A;  2G3D A;  3ISJ A;  3COZ A;  4DDH A;  3LE8 A;  2G5Z A;  2G2S A;  2A84 A;  1N2B A;  3AG6 A;  1N2H A;  4MUK A;  3IME A;  3CFA L;  1N2E A;  1V8F A;  2A52 A;  3Q12 A;  4MUN A;  2A50 A;  4EF6 A;  2A53 A;  3QTT A;  3CFH L;  3IOC A;  3N8H A;  3IOB A;  4MUL A;  3Q10 A;  3IMC A;  3LF4 A;  3COY A;  5HG0 A;  2A88 A;  1N2J A;  2G16 A;  4DE5 A;  3IVG A;  4EFK A;  3IUB A;  1IHO A;  4FZJ A;  5EXC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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