2GZFA

Crystal structure of the e9 dnase domain with a mutant immunity protein im9 (y54f)
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
82
structure length
82
Chain Sequence
KHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIFYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antibiotic/antibiotic inhibitor
molecule keywords Colicin-E9 immunity protein
publication title Crystal Structure of the Complex of the Colicin E9 DNase Domain with a Mutant Immunity Protein, IM9 (Y54F)
rcsb
source organism Escherichia coli k12
total genus 28
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2006-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2gzfA00
1MZ8A 2VLNA 1ZNVA 2GZFA 4F37A 2GYKA 1UJZA 3U43A 1BXIA 2VLOA 2JAZA 2GZIA 2NO8A 1FR2A 5EW5E 1E0HA 2GZEA 2GZJA 4UHPB 1AYIA 2K5XA 2JBGA 2VLQA 3GKLC 1EMVA 1UNKA 7CEIA 2VLPA 1IMQA 1GXGA 2WPTA 2K0DX 2JB0A 1GXHA 2ERHA 2GZGA 3GJNA 1IMPA 4QKOA 1CEIA
chains in the Genus database with same CATH superfamily
3DS0A 2KWLA 4F37A 2KGAA 2L4BA 1E0HA 3RG6C 2FVFA 3CPWO 1EMVA 2L22A 2GDXA 4U0BA 3WBHA 3G0VA 1K73Q 1VQ9P 2QEXP 2AFEA 1VQNP 3HZQA 1IUQA 3NTEA 4U0DA 2KGEA 2LL8A 4GR6A 2KG6A 2JYGA 2K5XA 4H2WC 5CZDB 3HYBA 2WPTA 2PEMA 1EOQA 3B4QA 1Q81Q 2N98A 1AF8A 2NO8A 2LF4A 3G26A 1AYIA 2XT1A 3CCQP 2PNGA 2JB0A 4XFZA 2JO0A 4XRQA 3GZMA 2KORA 2K0XA 3G1GA 2MF4A 3G71P 2GYKA 3G6EP 1UJZA 1VQLP 2JAZA 2Z44A 2MY5A 1KC8Q 5I4TG 3CCRP 3M1MA 4GR2A 2EIAA 1RO2A 3I56P 3CCMP 2FQ0A 2KODA 2M8LA 3U43A 3H47A 4PH0A 1M74A 2N5IA 1KQSO 2FQ2A 4U0EA 2L6EA 1D1DA 2PY8A 3I55P 4CA3A 1L0IA 2QA4P 2DNWA 3VRLC 4XROA 5JPAA 1NJIQ 2KW2A 2ROQA 2K2QA 3CMAP 4BPFA 3CMEP 4M0IA 3DS3A 1YI2P 3GKLC 1UNKA 4H2YC 7CEIA 1VQMP 1EIAA 2M5RA 1M6EX 5KP8B 1ACPA 1VQ6P 4HKGA 1QRJA 2XV6A 2KGCA 1M1KQ 2AVAA 3NY7B 1YJWP 5HGOA 1F80D 3CCJP 2EHTA 1M6NA 4XFYA 1GXGA 3EJEA 1Q86Q 1W2BO 1NQ4A 2LIUA 3H0DA 5HGNA 5F2KA 1T8KA 1ZNVA 2JU1A 1BAJA 1YITP 2KOQA 2VLOA 2KG8A 4IZ6A 2L9FA 2PEKA 2LKIA 4U0AA 2M8NA 3LMOA 4U0FA 3H4EA 3GJNA 1K8AQ 1E6JP 5DCKA 2MR8A 4XFXA 3B5IA 5EJDA 2FACA 5EW5E 4PWVB 3CCUP 2LPKA 2CNRA 2LIWA 2ERHA 1VQ4P 1DV5A 2OTJP 1X3OA 4IPYA 2MVVA 2GDWA 3CC4P 2XZ0D 1YJ9P 1VQ8P 2BHVA 2GDYA 1YHQP 1K30A 2JYLA 4BPGA 1VQ5P 1M90Q 4COCA 2AFDA 2L0QA 2LMLA 2VLQA 2PEQA 3CC2P 2KOOA 1IMQA 1HQBA 4PXHB 3CXCO 5BS2A 4DG9A 2CQ8A 2GZGA 1KLPA 3DS1A 2BUOA 3RG2A 1VQ7P 4COPA 1MZ8A 2JQ4A 4MRTC 2EHSA 2XXMA 5HV8A 4H2XC 1FR2A 1VQOP 2E1MA 2FHSC 2P9XA 2CWOA 3CCVP 2MR7A 5KP7B 3CE7A 2LTEA 3Q20A 1BXIA 2FAEA 2CGQA 2GZEA 4UHPB 2K93A 1Z6MA 2K94A 2OARA 2AF8A 2KG9A 2KOPA 1Q7YQ 2KGDA 3EJDA 1QVGO 1L0HA 4QNBA 5F2OA 2OTLP 2JGPA 3CCLP 2N6YA 1Q82Q 3CCEP 2PEOA 4PH1A 1GPJA 2KOSA 1YJNP 5F2NA 2MVUA 3DS2A 2X2BA 3DTJA 1AUMA 3CC7P 3DPHA 5BS1A 1YIJP 3CD6P 1RO0A 2CG5B 1CEIA 2VLNA 2MD9A 3OW2O 2GZIA 3G4SP 2JBGA 2EFJA 3CCSP 2M8PA 2VLPA 2LOLA 1ZMBA 2FQ1A 2K0DX 1A8OA 1N8RQ 1IMPA 1S72P 2XZ1C 3LRYA 2PENA 2GZFA 1HY8A 1VQKP 2QNWA 1QVFO 5HVCA 5KP6B 2GZJA 1OR5A 3G1IA 2KR5A 2K0YA 1JJ2O 3MGEA 4NEOA 2N5HA 3E2DA 1KD1Q 2DGYA 2FVEA 1GXHA 4U0CA 2N50A 3EJBA 4QKOA 2N6ZA 3P05A 3DS4A 1RNIA 2Z45A 4WYMA 5HGMA 4BPHA 3GZLA 2FADA 2ONTA 1VKUA 1K9MQ 2Z46A 3G21A 3G29A 1VHNA 2FVAA 5HGLA 3G28A 2VSQA 3DS5A 2JU2A 2EG5A 1DNYA 4R0MA 1A43A 2PEJA 2PEIA 1VQPP 2K92A
chains in the Genus database with same CATH topology
1MZ8A 2VLNA 1ZNVA 2GZFA 4F37A 2GYKA 1UJZA 3U43A 1BXIA 2VLOA 2JAZA 2GZIA 2NO8A 1FR2A 5EW5E 1E0HA 2GZEA 2GZJA 4UHPB 1AYIA 2K5XA 2JBGA 2VLQA 3GKLC 1EMVA 1UNKA 7CEIA 2VLPA 1IMQA 1GXGA 2WPTA 2K0DX 2JB0A 1GXHA 2ERHA 2GZGA 3GJNA 1IMPA 4QKOA 1CEIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MZ8 A;  2VLN A;  1ZNV A;  2GZF A;  4F37 A;  2GYK A;  1UJZ A;  3U43 A;  1BXI A;  2VLO A;  2JAZ A;  2GZI A;  2NO8 A;  1FR2 A;  5EW5 E;  1E0H A;  2GZE A;  2GZJ A;  4UHP B;  1AYI A;  2K5X A;  2JBG A;  2VLQ A;  3GKL C;  1EMV A;  1UNK A;  7CEI A;  2VLP A;  1IMQ A;  1GXG A;  2WPT A;  2K0D X;  2JB0 A;  1GXH A;  2ERH A;  2GZG A;  3GJN A;  1IMP A;  4QKO A;  1CEI A; 
#chains in the Genus database with same CATH topology
 3DS0 A;  2KWL A;  4F37 A;  2KGA A;  2L4B A;  1E0H A;  3RG6 C;  2FVF A;  3CPW O;  1EMV A;  2L22 A;  2GDX A;  4U0B A;  3WBH A;  3G0V A;  1K73 Q;  1VQ9 P;  2QEX P;  2AFE A;  1VQN P;  3HZQ A;  1IUQ A;  3NTE A;  4U0D A;  2KGE A;  2LL8 A;  4GR6 A;  2KG6 A;  2JYG A;  2K5X A;  4H2W C;  5CZD B;  3HYB A;  2WPT A;  2PEM A;  1EOQ A;  3B4Q A;  1Q81 Q;  2N98 A;  1AF8 A;  2NO8 A;  2LF4 A;  3G26 A;  1AYI A;  2XT1 A;  3CCQ P;  2PNG A;  2JB0 A;  4XFZ A;  2JO0 A;  4XRQ A;  3GZM A;  2KOR A;  2K0X A;  3G1G A;  2MF4 A;  3G71 P;  2GYK A;  3G6E P;  1UJZ A;  1VQL P;  2JAZ A;  2Z44 A;  2MY5 A;  1KC8 Q;  5I4T G;  3CCR P;  3M1M A;  4GR2 A;  2EIA A;  1RO2 A;  3I56 P;  3CCM P;  2FQ0 A;  2KOD A;  2M8L A;  3U43 A;  3H47 A;  4PH0 A;  1M74 A;  2N5I A;  1KQS O;  2FQ2 A;  4U0E A;  2L6E A;  1D1D A;  2PY8 A;  3I55 P;  4CA3 A;  1L0I A;  2QA4 P;  2DNW A;  3VRL C;  4XRO A;  5JPA A;  1NJI Q;  2KW2 A;  2ROQ A;  2K2Q A;  3CMA P;  4BPF A;  3CME P;  4M0I A;  3DS3 A;  1YI2 P;  3GKL C;  1UNK A;  4H2Y C;  7CEI A;  1VQM P;  1EIA A;  2M5R A;  1M6E X;  5KP8 B;  1ACP A;  1VQ6 P;  4HKG A;  1QRJ A;  2XV6 A;  2KGC A;  1M1K Q;  2AVA A;  3NY7 B;  1YJW P;  5HGO A;  1F80 D;  3CCJ P;  2EHT A;  1M6N A;  4XFY A;  1GXG A;  3EJE A;  1Q86 Q;  1W2B O;  1NQ4 A;  2LIU A;  3H0D A;  5HGN A;  5F2K A;  1T8K A;  1ZNV A;  2JU1 A;  1BAJ A;  1YIT P;  2KOQ A;  2VLO A;  2KG8 A;  4IZ6 A;  2L9F A;  2PEK A;  2LKI A;  4U0A A;  2M8N A;  3LMO A;  4U0F A;  3H4E A;  3GJN A;  1K8A Q;  1E6J P;  5DCK A;  2MR8 A;  4XFX A;  3B5I A;  5EJD A;  2FAC A;  5EW5 E;  4PWV B;  3CCU P;  2LPK A;  2CNR A;  2LIW A;  2ERH A;  1VQ4 P;  1DV5 A;  2OTJ P;  1X3O A;  4IPY A;  2MVV A;  2GDW A;  3CC4 P;  2XZ0 D;  1YJ9 P;  1VQ8 P;  2BHV A;  2GDY A;  1YHQ P;  1K30 A;  2JYL A;  4BPG A;  1VQ5 P;  1M90 Q;  4COC A;  2AFD A;  2L0Q A;  2LML A;  2VLQ A;  2PEQ A;  3CC2 P;  2KOO A;  1IMQ A;  1HQB A;  4PXH B;  3CXC O;  5BS2 A;  4DG9 A;  2CQ8 A;  2GZG A;  1KLP A;  3DS1 A;  2BUO A;  3RG2 A;  1VQ7 P;  4COP A;  1MZ8 A;  2JQ4 A;  4MRT C;  2EHS A;  2XXM A;  5HV8 A;  4H2X C;  1FR2 A;  1VQO P;  2E1M A;  2FHS C;  2P9X A;  2CWO A;  3CCV P;  2MR7 A;  5KP7 B;  3CE7 A;  2LTE A;  3Q20 A;  1BXI A;  2FAE A;  2CGQ A;  2GZE A;  4UHP B;  2K93 A;  1Z6M A;  2K94 A;  2OAR A;  2AF8 A;  2KG9 A;  2KOP A;  1Q7Y Q;  2KGD A;  3EJD A;  1QVG O;  1L0H A;  4QNB A;  5F2O A;  2OTL P;  2JGP A;  3CCL P;  2N6Y A;  1Q82 Q;  3CCE P;  2PEO A;  4PH1 A;  1GPJ A;  2KOS A;  1YJN P;  5F2N A;  2MVU A;  3DS2 A;  2X2B A;  3DTJ A;  1AUM A;  3CC7 P;  3DPH A;  5BS1 A;  1YIJ P;  3CD6 P;  1RO0 A;  2CG5 B;  1CEI A;  2VLN A;  2MD9 A;  3OW2 O;  2GZI A;  3G4S P;  2JBG A;  2EFJ A;  3CCS P;  2M8P A;  2VLP A;  2LOL A;  1ZMB A;  2FQ1 A;  2K0D X;  1A8O A;  1N8R Q;  1IMP A;  1S72 P;  2XZ1 C;  3LRY A;  2PEN A;  2GZF A;  1HY8 A;  1VQK P;  2QNW A;  1QVF O;  5HVC A;  5KP6 B;  2GZJ A;  1OR5 A;  3G1I A;  2KR5 A;  2K0Y A;  1JJ2 O;  3MGE A;  4NEO A;  2N5H A;  3E2D A;  1KD1 Q;  2DGY A;  2FVE A;  1GXH A;  4U0C A;  2N50 A;  3EJB A;  4QKO A;  2N6Z A;  3P05 A;  3DS4 A;  1RNI A;  2Z45 A;  4WYM A;  5HGM A;  4BPH A;  3GZL A;  2FAD A;  2ONT A;  1VKU A;  1K9M Q;  2Z46 A;  3G21 A;  3G29 A;  1VHN A;  2FVA A;  5HGL A;  3G28 A;  2VSQ A;  3DS5 A;  2JU2 A;  2EG5 A;  1DNY A;  4R0M A;  1A43 A;  2PEJ A;  2PEI A;  1VQP P;  2K92 A; 
#chains in the Genus database with same CATH homology
 1MZ8 A;  2VLN A;  1ZNV A;  2GZF A;  4F37 A;  2GYK A;  1UJZ A;  3U43 A;  1BXI A;  2VLO A;  2JAZ A;  2GZI A;  2NO8 A;  1FR2 A;  5EW5 E;  1E0H A;  2GZE A;  2GZJ A;  4UHP B;  1AYI A;  2K5X A;  2JBG A;  2VLQ A;  3GKL C;  1EMV A;  1UNK A;  7CEI A;  2VLP A;  1IMQ A;  1GXG A;  2WPT A;  2K0D X;  2JB0 A;  1GXH A;  2ERH A;  2GZG A;  3GJN A;  1IMP A;  4QKO A;  1CEI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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