2HAJA

Solution structure of the helicase-binding domain of escherichia coli primase
Total Genus 42
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
135
structure length
135
Chain Sequence
KRTTMRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARERTHGLSNEERLELWTLNQELAKK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords DNA primase
publication title Monomeric solution structure of the helicase-binding domain of Escherichia coli DnaG primase
pubmed doi rcsb
source organism Escherichia coli
total genus 42
structure length 135
sequence length 135
ec nomenclature ec 2.7.7.-:
pdb deposition date 2006-06-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08278 DnaG_DnaB_bind DNA primase DnaG DnaB-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.860.10 Mainly Alpha Orthogonal Bundle DNAb Helicase; Chain A DNAb Helicase; Chain A 2hajA00
2R6AA 4EHSA 2Q6TA 1T3WA 2LZNA 2R6CG 4IM9A 2R6AC 2R6DA 4ESVA 2R5UA 1B79A 1JWEA 2VYFA 3GXVA 3BGWA 2HAJA 1Z8SA 2R6CA
chains in the Genus database with same CATH superfamily
2R6AA 4EHSA 2Q6TA 1T3WA 2LZNA 2R6CG 4IM9A 2R6AC 2R6DA 4ESVA 2R5UA 1B79A 1JWEA 2VYFA 3GXVA 3BGWA 2HAJA 1Z8SA 2R6CA
chains in the Genus database with same CATH topology
2R6AA 4EHSA 2Q6TA 1T3WA 2LZNA 2R6CG 4IM9A 2R6AC 2R6DA 4ESVA 2R5UA 1B79A 1JWEA 2VYFA 3GXVA 3BGWA 2HAJA 1Z8SA 2R6CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R6A A;  4EHS A;  2Q6T A;  1T3W A;  2LZN A;  2R6C G;  4IM9 A;  2R6A C;  2R6D A;  4ESV A;  2R5U A;  1B79 A;  1JWE A;  2VYF A;  3GXV A;  3BGW A;  2HAJ A;  1Z8S A;  2R6C A; 
#chains in the Genus database with same CATH topology
 2R6A A;  4EHS A;  2Q6T A;  1T3W A;  2LZN A;  2R6C G;  4IM9 A;  2R6A C;  2R6D A;  4ESV A;  2R5U A;  1B79 A;  1JWE A;  2VYF A;  3GXV A;  3BGW A;  2HAJ A;  1Z8S A;  2R6C A; 
#chains in the Genus database with same CATH homology
 2R6A A;  4EHS A;  2Q6T A;  1T3W A;  2LZN A;  2R6C G;  4IM9 A;  2R6A C;  2R6D A;  4ESV A;  2R5U A;  1B79 A;  1JWE A;  2VYF A;  3GXV A;  3BGW A;  2HAJ A;  1Z8S A;  2R6C A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...