2HCNA

Crystal structure of rna dependent rna polymerase domain from west nile virus
Total Genus 174
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
174
sequence length
571
structure length
486
Chain Sequence
LVNGVVRLLSKPWDTITTKAPEPPEGVKYVLNETTNWLWAFLAREKRPRMCSREEFIRKVNSNAAQWRSAREAVEDPKFWEMVDEEREAHLRGECHTCRAIWFMWLGARFLEFEALGFLNEDHWLGRKNSGGGVEGLGLQKLGYILREVGTRPGGRIYADDTAGWDTRITRADLENEAKVLELLDGEHRRLARAIIELTYRSGQVVTYALNTFTNLAVQLVRMMEGEGVIGPDDVEKLTKGKGPKVRTWLSENGEERLSRMAVSGDDCVVKPLDDRFATSLHFLNAMSKVRKDIQEWKPSTGWYDWQQVPFCSNHFTELIMKDGRTLVTPCRGQDELVGRARISPNVRDTACLAKSYAQMWLLLYFHRRDLRLMANAICSAVPVNWVPTGRTTWSIHAGGEWMTTEDMLEVWNRVWIEENEWMEDKTPVEKWSDVPYSGKREDIWCGSLIGTRARATWAENIQVAINQVRSIIGDEKYVDYMSSLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase
molecule keywords RNA-directed RNA polymerase (NS5)
publication title Crystal structure of the RNA polymerase domain of the West Nile virus non-structural protein 5
pubmed doi rcsb
source organism Kunjin virus
total genus 174
structure length 486
sequence length 571
ec nomenclature ec 2.1.1.56: mRNA (guanine-N(7)-)-methyltransferase.
pdb deposition date 2006-06-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.90 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 2hcnA03
2HFZA 3VWSA 2HCSA 2J7UA 2J7WA 2HCNA
chains in the Genus database with same CATH superfamily
3G0TA 1U2ZA 1QPZA 4FBIA 2PPXA 5DT2A 1LMB3 2L1PA 2HFZA 3FMYA 4MCXA 3S8QA 4PU4C 4X4DA 5DRTA 1XWRA 3QYXA 2L8NA 1HF0A 1E3OC 2PE5A 3GZDC 2PXLA 2PUCA 4JQDA 4FN3A 1ZUGA 1CJGA 2PUDA 1ZZ9A 2BNMA 3R09A 1PRAA 1ZZ8A 4MCTA 2XXQA 4EK9A 2J7WA 3OQMA 1JFTA 4Z5HA 1CQTA 4YG7B 3A9XA 2PXFA 1LQCA 1DW9A 3H5TA 1WETA 2LYJA 2IV1A 3IVPA 3OP9A 2WUSR 2PUBA 1RZRA 2O38A 3HZIB 1ZZ6A 3CROL 3JXBC 2FFHA 2MEZA 1PNRA 2M4HA 3LISA 1X2LA 4X4IA 2LCVA 5GAHi 4GHJA 2LYKA 4Z5CA 2LYRA 3OQNA 2EWTA 3CECA 4I6RA 3UWPA 3RZZA 1WH6A 4X4EA 2IUOA 2A6CA 3FYAA 3SX0A 2AUWA 3OWQA 2XXAA 2D5VA 2IU7A 3ZPXA 1QQBA 2H8RA 3TELA 2KEJA 2GRMA 2LLWA 3PE5A 4I6UA 3NZLA 1ZVVA 3FYMA 2AXZA 2V3CC 2HCSA 3DNVB 2LYPA 3VWSA 1ZZBA 2WIUB 3TEPA 3GBFA 3MLFA 4F8DA 2KEIA 1L1MA 3A9ZA 3QOWA 2OFYA 2AXVA 4EZIA 2PUFA 1PRVA 1OSLA 2LYSA 1JWLA 2XXPA 3VK0A 4EQZA 1IC8A 2GZUA 2PXVA 4HRAA 4YG1A 2AXUA 3SR4A 3QF3A 2EBYA 3GUUA 4EKIA 1DULA 3M9LA 3OQOA 3GN5B 4PU8A 1QP0A 3G5GA 3B7HA 3KZ3A 2L49A 4Z58A 4J1XA 2LLVA 5DSXA 1EFAA 4PU3C 1BDHA 1X57A 2EF8A 2R63A 4Q2JA 2J7UA 3ZHIA 1BDIA 5JUWA 2KEKA 1R63A 1Y9QA 1POUA 2JCGA 2MQKA 2AWIA 1RZRD 3TFLA 1LLIA 2PUGA 5GAGi 3L1PA 2JQEA 1QB2A 1QP4A 1LCCA 2BNNA 4ER3A 1RZSA 4GQMA 2IVBA 4ER0A 2XJ3A 2HCNA 1RIOA 3F51A 4IA8A 4DE8A 1B0NA 2B5AA 3KJXA 3G7DA 2XCJA 3BD1A 4IWRA 2PXUA 3F52A 2OR1L 4O8BA 1NEQA 1ZAYA 2LYLA 3LQXA 2IVGA 1JH9A 5DTQA 1NERA 2HINA 1HQ1A 2FJRA 2PXEA 3QFIA 3DM5A 4ER7A 4X4CA 3SCHA 3F6WA 2XIUA 3CLCA 4ER5A 1AU7A 1QZXA 4X4BA 4JCXA 3QWGA 2BJCA 5DRYA 3EUSA 5DTMA 2PXTA 3QQ6A 1ZS4A 1R69A 2PXDA 1UXDA 2XSDC 2MXDA 2PUEA 3R1FA 2GRLA 2HSGA 3SCFA 1VPWA 3KXAA 4YG4A 2PXQA 4Y42A 1RPEL 3OKZA 4Z5DA 4YARA 2PXKA 4YBAA 1JFSA 2AW6A 2LNMA 1SQ8A 3PXPA 1NW3A 4X4HA 4OB4A 5DTRA 2IVQA 2PXPA 1PERL 3GZDA 5K98B 2YBDA 3GN5A 4PU7A 4ER6A 4X4FA 3GZCA 4WVLA 3NXHA 1ZZCA 4OBMA 3BS3A 1ZPQA 2CROA 4I6TA 3OMTA 1YSEA 3ME5A 3A9YA 5A7LA 1GT0C 3TRBA 3O9XA 2O49A 1Y7YA 2JVLA 2ICPA 3QOXA 4EKGA 1DWKA 3JXDL 1S7EA 1MFQC 4I8TA 1UTXA 3MEJA 4Z59A 1QP7A 3KL4A 3JXCL 2BNOA 2O4AA 3ZKCA 4IVZA 1PRUA 1OCTC 1UXCA 1O4XA 3LFPA 2CSFA 2PIJA 4X4GA 2ICTA 1LCDA 2VEOA 4DE9A 1ZZ7A 2R1JL 3SCGA 1WH8A 2KZ8A 1WIZA 2PUAA 4JCYA 3UFDA 2ODRD 3BDNA 2XI8A 4J1WA 1QQAA 3NROA 1ADRA 3U3WA 2PXBA 3D1NI 3NDBB 2KPJA 3ZHMA 2LYQA 4NDWA
chains in the Genus database with same CATH topology
3NXHA 3A9ZA 3A9XA 4ER3A 3QOWA 3NZLA 4Q2JA 3GUUA 4OBMA 3UWPA 4ER7A 3G0TA 1U2ZA 4ER0A 2ODRD 2J7UA 2HCSA 4EKIA 3M9LA 2M4HA 2HCNA 3MEJA 3OKZA 4ER5A 5JUWA 3SX0A 3R09A 3OWQA 3ME5A 4DE9A 4EZIA 4DE8A 5DT2A 2L1PA 2LNMA 3A9YA 3NROA 5DRYA 3ZPXA 3TFLA 5DTMA 2HFZA 2XXQA 2XXPA 5DTQA 3VWSA 4EK9A 4EQZA 3TELA 1NW3A 3TEPA 5DTRA 5DRTA 2J7WA 2MXDA 3GZDA 3QOXA 4HRAA 4WVLA 2LLVA 3QFIA 5DSXA 4EKGA 2LLWA 2YBDA 4ER6A 3SR4A 2VEOA 3GZDC 3GZCA 3PE5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HFZ A;  3VWS A;  2HCS A;  2J7U A;  2J7W A;  2HCN A; 
#chains in the Genus database with same CATH topology
 3G0T A;  1U2Z A;  1QPZ A;  4FBI A;  2PPX A;  5DT2 A;  1LMB 3;  2L1P A;  2HFZ A;  3FMY A;  4MCX A;  3S8Q A;  4PU4 C;  4X4D A;  5DRT A;  1XWR A;  3QYX A;  2L8N A;  1HF0 A;  1E3O C;  2PE5 A;  3GZD C;  2PXL A;  2PUC A;  4JQD A;  4FN3 A;  1ZUG A;  1CJG A;  2PUD A;  1ZZ9 A;  2BNM A;  3R09 A;  1PRA A;  1ZZ8 A;  4MCT A;  2XXQ A;  4EK9 A;  2J7W A;  3OQM A;  1JFT A;  4Z5H A;  1CQT A;  4YG7 B;  3A9X A;  2PXF A;  1LQC A;  1DW9 A;  3H5T A;  1WET A;  2LYJ A;  2IV1 A;  3IVP A;  3OP9 A;  2WUS R;  2PUB A;  1RZR A;  2O38 A;  3HZI B;  1ZZ6 A;  3CRO L;  3JXB C;  2FFH A;  2MEZ A;  1PNR A;  2M4H A;  3LIS A;  1X2L A;  4X4I A;  2LCV A;  5GAH i;  4GHJ A;  2LYK A;  4Z5C A;  2LYR A;  3OQN A;  2EWT A;  3CEC A;  4I6R A;  3UWP A;  3RZZ A;  1WH6 A;  4X4E A;  2IUO A;  2A6C A;  3FYA A;  3SX0 A;  2AUW A;  3OWQ A;  2XXA A;  2D5V A;  2IU7 A;  3ZPX A;  1QQB A;  2H8R A;  3TEL A;  2KEJ A;  2GRM A;  2LLW A;  3PE5 A;  4I6U A;  3NZL A;  1ZVV A;  3FYM A;  2AXZ A;  2V3C C;  2HCS A;  3DNV B;  2LYP A;  3VWS A;  1ZZB A;  2WIU B;  3TEP A;  3GBF A;  3MLF A;  4F8D A;  2KEI A;  1L1M A;  3A9Z A;  3QOW A;  2OFY A;  2AXV A;  4EZI A;  2PUF A;  1PRV A;  1OSL A;  2LYS A;  1JWL A;  2XXP A;  3VK0 A;  4EQZ A;  1IC8 A;  2GZU A;  2PXV A;  4HRA A;  4YG1 A;  2AXU A;  3SR4 A;  3QF3 A;  2EBY A;  3GUU A;  4EKI A;  1DUL A;  3M9L A;  3OQO A;  3GN5 B;  4PU8 A;  1QP0 A;  3G5G A;  3B7H A;  3KZ3 A;  2L49 A;  4Z58 A;  4J1X A;  2LLV A;  5DSX A;  1EFA A;  4PU3 C;  1BDH A;  1X57 A;  2EF8 A;  2R63 A;  4Q2J A;  2J7U A;  3ZHI A;  1BDI A;  5JUW A;  2KEK A;  1R63 A;  1Y9Q A;  1POU A;  2JCG A;  2MQK A;  2AWI A;  1RZR D;  3TFL A;  1LLI A;  2PUG A;  5GAG i;  3L1P A;  2JQE A;  1QB2 A;  1QP4 A;  1LCC A;  2BNN A;  4ER3 A;  1RZS A;  4GQM A;  2IVB A;  4ER0 A;  2XJ3 A;  2HCN A;  1RIO A;  3F51 A;  4IA8 A;  4DE8 A;  1B0N A;  2B5A A;  3KJX A;  3G7D A;  2XCJ A;  3BD1 A;  4IWR A;  2PXU A;  3F52 A;  2OR1 L;  4O8B A;  1NEQ A;  1ZAY A;  2LYL A;  3LQX A;  2IVG A;  1JH9 A;  5DTQ A;  1NER A;  2HIN A;  1HQ1 A;  2FJR A;  2PXE A;  3QFI A;  3DM5 A;  4ER7 A;  4X4C A;  3SCH A;  3F6W A;  2XIU A;  3CLC A;  4ER5 A;  1AU7 A;  1QZX A;  4X4B A;  4JCX A;  3QWG A;  2BJC A;  5DRY A;  3EUS A;  5DTM A;  2PXT A;  3QQ6 A;  1ZS4 A;  1R69 A;  2PXD A;  1UXD A;  2XSD C;  2MXD A;  2PUE A;  3R1F A;  2GRL A;  2HSG A;  3SCF A;  1VPW A;  3KXA A;  4YG4 A;  2PXQ A;  4Y42 A;  1RPE L;  3OKZ A;  4Z5D A;  4YAR A;  2PXK A;  4YBA A;  1JFS A;  2AW6 A;  2LNM A;  1SQ8 A;  3PXP A;  1NW3 A;  4X4H A;  4OB4 A;  5DTR A;  2IVQ A;  2PXP A;  1PER L;  3GZD A;  5K98 B;  2YBD A;  3GN5 A;  4PU7 A;  4ER6 A;  4X4F A;  3GZC A;  4WVL A;  3NXH A;  1ZZC A;  4OBM A;  3BS3 A;  1ZPQ A;  2CRO A;  4I6T A;  3OMT A;  1YSE A;  3ME5 A;  3A9Y A;  5A7L A;  1GT0 C;  3TRB A;  3O9X A;  2O49 A;  1Y7Y A;  2JVL A;  2ICP A;  3QOX A;  4EKG A;  1DWK A;  3JXD L;  1S7E A;  1MFQ C;  4I8T A;  1UTX A;  3MEJ A;  4Z59 A;  1QP7 A;  3KL4 A;  3JXC L;  2BNO A;  2O4A A;  3ZKC A;  4IVZ A;  1PRU A;  1OCT C;  1UXC A;  1O4X A;  3LFP A;  2CSF A;  2PIJ A;  4X4G A;  2ICT A;  1LCD A;  2VEO A;  4DE9 A;  1ZZ7 A;  2R1J L;  3SCG A;  1WH8 A;  2KZ8 A;  1WIZ A;  2PUA A;  4JCY A;  3UFD A;  2ODR D;  3BDN A;  2XI8 A;  4J1W A;  1QQA A;  3NRO A;  1ADR A;  3U3W A;  2PXB A;  3D1N I;  3NDB B;  2KPJ A;  3ZHM A;  2LYQ A;  4NDW A; 
#chains in the Genus database with same CATH homology
 3NXH A;  3A9Z A;  3A9X A;  4ER3 A;  3QOW A;  3NZL A;  4Q2J A;  3GUU A;  4OBM A;  3UWP A;  4ER7 A;  3G0T A;  1U2Z A;  4ER0 A;  2ODR D;  2J7U A;  2HCS A;  4EKI A;  3M9L A;  2M4H A;  2HCN A;  3MEJ A;  3OKZ A;  4ER5 A;  5JUW A;  3SX0 A;  3R09 A;  3OWQ A;  3ME5 A;  4DE9 A;  4EZI A;  4DE8 A;  5DT2 A;  2L1P A;  2LNM A;  3A9Y A;  3NRO A;  5DRY A;  3ZPX A;  3TFL A;  5DTM A;  2HFZ A;  2XXQ A;  2XXP A;  5DTQ A;  3VWS A;  4EK9 A;  4EQZ A;  3TEL A;  1NW3 A;  3TEP A;  5DTR A;  5DRT A;  2J7W A;  2MXD A;  3GZD A;  3QOX A;  4HRA A;  4WVL A;  2LLV A;  3QFI A;  5DSX A;  4EKG A;  2LLW A;  2YBD A;  4ER6 A;  3SR4 A;  2VEO A;  3GZD C;  3GZC A;  3PE5 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...