2HEVR

Crystal structure of the complex between ox40l and ox40
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
140
structure length
140
Chain Sequence
LHCVGDTYPSNDRCCHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTATQDTVCRCRAGTQPLDSYKPGVDCAPCPPGHFSPGDNQACKPWTNCTLAGKHTLQPASNSSDAICED
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cytokine
molecule keywords Tumor necrosis factor ligand superfamily member 4
publication title The Crystal Structure of the Costimulatory OX40-OX40L Complex.
pubmed doi rcsb
source organism Homo sapiens
total genus 28
structure length 140
sequence length 140
ec nomenclature
pdb deposition date 2006-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF00020 TNFR_c6 TNFR/NGFR cysteine-rich region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 2hevR02
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 2hevR01
3U3SA 1JMAB 1NCFA 3ME2R 3WVTA 4E4DR 1EXTA 5DMJA 3TJEF 4FHQA 3QO4A 3U3TA 2HEYR 2X10A 2HEVR 3U3VA 2AW2B 4RSUD 4OD2S 5L36B 4YN0A 3THMF 4M4RA 4M4PA 3QBQB 1FT4A 4GIQR 3ALQR 4J6GC 4MSVB 4BK4A 1D0GR 3MI8D 4BK5A 5IHLA 3U3PA 2UWIA 3K51B 1DU3A 3MHDD 3URFZ 1SG1X 3X3FA 3IJ2X 4KGQC 2H9GR 4MXWR 4KGGC 3ME4A 1ZA3R 3FL7A 3QD6R 4I9XC 5BNQR 1TNRR 3MBWA 4N90R 3BUKC 5CIRE 3U3QA 1D4VA
chains in the Genus database with same CATH superfamily
3U3SA 1JMAB 1NCFA 3ME2R 3WVTA 4E4DR 1EXTA 5DMJA 3TJEF 2E4WA 4FHQA 3QO4A 3U3TA 2HEYR 2X10A 2HEVR 2E4XA 3U3VA 2AW2B 2E4UA 4RSUD 4OD2S 5L36B 4YN0A 2E4YA 3THMF 4M4RA 4M4PA 3QBQB 1FT4A 4GIQR 3ALQR 4J6GC 2QR6A 4MSVB 1D0GR 3MI8D 4BK4A 4BK5A 5IHLA 3U3PA 2UWIA 3K51B 1DU3A 3MHDD 3URFZ 1SG1X 3X3FA 3IJ2X 4KGQC 2H9GR 4MXWR 4KGGC 3ME4A 1ZA3R 3FL7A 3QD6R 4I9XC 5BNQR 1TNRR 3MBWA 2E4VA 4N90R 3BUKC 5CIRE 3U3QA 1D4VA
chains in the Genus database with same CATH topology
3U3SA 1JMAB 1NCFA 3ME2R 3WVTA 4E4DR 1EXTA 5DMJA 3TJEF 4FHQA 3QO4A 3U3TA 2HEYR 2X10A 2HEVR 3U3VA 2AW2B 4RSUD 4OD2S 5L36B 4YN0A 3THMF 4M4RA 4M4PA 3QBQB 1FT4A 4GIQR 3ALQR 4J6GC 4MSVB 4BK4A 1D0GR 3MI8D 4BK5A 5IHLA 3U3PA 2UWIA 3K51B 1DU3A 3MHDD 3URFZ 1SG1X 3X3FA 3IJ2X 4KGQC 2H9GR 4MXWR 4KGGC 3ME4A 1ZA3R 3FL7A 3QD6R 4I9XC 5BNQR 1TNRR 3MBWA 4N90R 3BUKC 5CIRE 3U3QA 1D4VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U3S A;  1JMA B;  1NCF A;  3ME2 R;  3WVT A;  4E4D R;  1EXT A;  5DMJ A;  3TJE F;  4FHQ A;  3QO4 A;  3U3T A;  2HEY R;  2X10 A;  2HEV R;  3U3V A;  2AW2 B;  4RSU D;  4OD2 S;  5L36 B;  4YN0 A;  3THM F;  4M4R A;  4M4P A;  3QBQ B;  1FT4 A;  4GIQ R;  3ALQ R;  4J6G C;  4MSV B;  4BK4 A;  1D0G R;  3MI8 D;  4BK5 A;  5IHL A;  3U3P A;  2UWI A;  3K51 B;  1DU3 A;  3MHD D;  3URF Z;  1SG1 X;  3X3F A;  3IJ2 X;  4KGQ C;  2H9G R;  4MXW R;  4KGG C;  3ME4 A;  1ZA3 R;  3FL7 A;  3QD6 R;  4I9X C;  5BNQ R;  1TNR R;  3MBW A;  4N90 R;  3BUK C;  5CIR E;  3U3Q A;  1D4V A; 
#chains in the Genus database with same CATH topology
 3U3S A;  1JMA B;  1NCF A;  3ME2 R;  3WVT A;  4E4D R;  1EXT A;  5DMJ A;  3TJE F;  2E4W A;  4FHQ A;  3QO4 A;  3U3T A;  2HEY R;  2X10 A;  2HEV R;  2E4X A;  3U3V A;  2AW2 B;  2E4U A;  4RSU D;  4OD2 S;  5L36 B;  4YN0 A;  2E4Y A;  3THM F;  4M4R A;  4M4P A;  3QBQ B;  1FT4 A;  4GIQ R;  3ALQ R;  4J6G C;  2QR6 A;  4MSV B;  1D0G R;  3MI8 D;  4BK4 A;  4BK5 A;  5IHL A;  3U3P A;  2UWI A;  3K51 B;  1DU3 A;  3MHD D;  3URF Z;  1SG1 X;  3X3F A;  3IJ2 X;  4KGQ C;  2H9G R;  4MXW R;  4KGG C;  3ME4 A;  1ZA3 R;  3FL7 A;  3QD6 R;  4I9X C;  5BNQ R;  1TNR R;  3MBW A;  2E4V A;  4N90 R;  3BUK C;  5CIR E;  3U3Q A;  1D4V A; 
#chains in the Genus database with same CATH homology
 3U3S A;  1JMA B;  1NCF A;  3ME2 R;  3WVT A;  4E4D R;  1EXT A;  5DMJ A;  3TJE F;  4FHQ A;  3QO4 A;  3U3T A;  2HEY R;  2X10 A;  2HEV R;  3U3V A;  2AW2 B;  4RSU D;  4OD2 S;  5L36 B;  4YN0 A;  3THM F;  4M4R A;  4M4P A;  3QBQ B;  1FT4 A;  4GIQ R;  3ALQ R;  4J6G C;  4MSV B;  4BK4 A;  1D0G R;  3MI8 D;  4BK5 A;  5IHL A;  3U3P A;  2UWI A;  3K51 B;  1DU3 A;  3MHD D;  3URF Z;  1SG1 X;  3X3F A;  3IJ2 X;  4KGQ C;  2H9G R;  4MXW R;  4KGG C;  3ME4 A;  1ZA3 R;  3FL7 A;  3QD6 R;  4I9X C;  5BNQ R;  1TNR R;  3MBW A;  4N90 R;  3BUK C;  5CIR E;  3U3Q A;  1D4V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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