2HM2Q

Solution structure of asc2
Total Genus 27
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
89
structure length
89
Chain Sequence
MGTKREAILKVLENLTPEELKKFKMKLGTVPLREGFERIPRGALGQLDIVDLTDKLVASYYEDYAAELVVAVLRDMRMLEEAARLQRAA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Apoptosis
molecule keywords Pyrin-only protein 1
publication title Structure and dynamics of ASC2, a pyrin domain-only protein that regulates inflammatory signaling
pubmed doi rcsb
source organism Homo sapiens
total genus 27
structure length 89
sequence length 89
ec nomenclature
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
Q PF02758 PYRIN PAAD/DAPIN/Pyrin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2hm2Q00
1D2ZB 3YGSP 2N7ZA 1CY5A 2YVIA 4N1JA 2LWEA 4D8OA 4E9MA 2O71A 3EZQB 2N1FA 2MN4A 3MOPA 4QOBA 4O6XA 2M5VA 4RHWA 1FADA 2D96A 1Z6TA 2B1WA 1YGOA 1E3YA 3MOPK 2P1HA 2DO9A 4F44A 4M9ZA 2DBFA 2BBZA 4N1KA 2KM6A 2F1SA 4M9XA 1A1WA 4EWIA 3LQRA 2OF5A 3CRDA 3YGSC 2L9MA 4M9SA 1A1ZA 4FH0A 3J63A 2DBGA 1UCPA 2YU0A 1DGNA 4O9FA 2HM2Q 1DDFA 4JQWA 2NSNA 3J6JA 4LWDA 2MB9A 4DWNA 2N97A 4IZ7B 2NZ7A 2GF5A 2BBRA 4ZBWA 2LWDA 3CL3A 2MS8A 4N1LA 1WH4A 2IB1A 4A2WA 3KATA 1WXPA 2VGQA 4I16A 2YQFA 4O9LA 4RHWE 4F42A 3T6PA 2N00A 4O7QA 2DBHA 3MOPG 4IZ5E 1WMGA 2KN6A 2NAQA 1D2ZA 2G7RA 4A2QA 1NGRA 1PN5A 1N3KA 1E41A 2MS7A 2YGSA 3QF2A 4UZ0A 4IZAB 3EZQA 3LQQA 1CWWA 2OF5H 2N80A 1ICHA 4P4HI 2A9IA 2LS7A 2L6AA 2N83A 2DBDA 2A5YB 2MPCA 4P4HA 4NQKA 4JUPA 1C15A
chains in the Genus database with same CATH superfamily
1D2ZB 3YGSP 2N7ZA 1CY5A 2YVIA 4N1JA 2LWEA 4D8OA 2MJMA 4E9MA 2O71A 3EZQB 2N1FA 2MN4A 3MOPA 4QOBA 4O6XA 2M5VA 4RHWA 1FADA 2D96A 1Z6TA 2B1WA 1YGOA 1E3YA 3MOPK 2P1HA 2DO9A 4F44A 4M9ZA 2DBFA 2BBZA 4N1KA 2KM6A 2F1SA 4M9XA 1A1WA 4EWIA 3LQRA 2OF5A 3CRDA 3YGSC 2L9MA 4M9SA 1A1ZA 4FH0A 3J63A 2DBGA 1UCPA 2YU0A 1DGNA 4O9FA 2HM2Q 1DDFA 4JQWA 2NSNA 3J6JA 4LWDA 2MB9A 4DWNA 2N97A 4IZ7B 2NZ7A 2GF5A 2BBRA 4ZBWA 2LWDA 3CL3A 2MS8A 4N1LA 1WH4A 2IB1A 4A2WA 3KATA 1WXPA 2VGQA 4I16A 2YQFA 4O9LA 4RHWE 4F42A 3T6PA 2N00A 4O7QA 2DBHA 3MOPG 4IZ5E 1WMGA 2KN6A 2NAQA 1D2ZA 2G7RA 4A2QA 1NGRA 1PN5A 1N3KA 1E41A 2MS7A 2YGSA 3QF2A 4UZ0A 4IZAB 3EZQA 3LQQA 1CWWA 2OF5H 2N80A 1ICHA 4P4HI 2A9IA 2XV9A 2LS7A 2L6AA 2N83A 2DBDA 2A5YB 2MPCA 4P4HA 4NQKA 4JUPA 1C15A
chains in the Genus database with same CATH topology
1D2ZB 3YGSP 2N7ZA 1CY5A 2YVIA 4N1JA 2LWEA 4D8OA 2MJMA 4E9MA 2O71A 3EZQB 2N1FA 2MN4A 3MOPA 4QOBA 4O6XA 2M5VA 4RHWA 1FADA 2D96A 1Z6TA 2B1WA 1YGOA 1E3YA 3MOPK 2P1HA 2DO9A 4F44A 4M9ZA 2DBFA 2BBZA 4N1KA 2KM6A 2F1SA 4M9XA 1A1WA 4EWIA 3LQRA 2OF5A 3CRDA 3YGSC 2L9MA 4M9SA 1A1ZA 4FH0A 3J63A 2DBGA 1UCPA 2YU0A 1DGNA 4O9FA 2HM2Q 1DDFA 4JQWA 2NSNA 3J6JA 4LWDA 2MB9A 4DWNA 2N97A 4IZ7B 2NZ7A 2GF5A 2BBRA 4ZBWA 2LWDA 3CL3A 2MS8A 4N1LA 1WH4A 2IB1A 4A2WA 3KATA 1WXPA 2VGQA 4I16A 2YQFA 4O9LA 4RHWE 4F42A 3T6PA 2N00A 4O7QA 2DBHA 3MOPG 4IZ5E 1WMGA 2KN6A 2NAQA 1D2ZA 2G7RA 4A2QA 1NGRA 1PN5A 1N3KA 1E41A 2MS7A 2YGSA 3QF2A 4UZ0A 4IZAB 3EZQA 3LQQA 1CWWA 2OF5H 2N80A 1ICHA 4P4HI 2A9IA 2XV9A 2LS7A 2L6AA 2N83A 2DBDA 2A5YB 2MPCA 4P4HA 4NQKA 4JUPA 1C15A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1D2Z B;  3YGS P;  2N7Z A;  1CY5 A;  2YVI A;  4N1J A;  2LWE A;  4D8O A;  4E9M A;  2O71 A;  3EZQ B;  2N1F A;  2MN4 A;  3MOP A;  4QOB A;  4O6X A;  2M5V A;  4RHW A;  1FAD A;  2D96 A;  1Z6T A;  2B1W A;  1YGO A;  1E3Y A;  3MOP K;  2P1H A;  2DO9 A;  4F44 A;  4M9Z A;  2DBF A;  2BBZ A;  4N1K A;  2KM6 A;  2F1S A;  4M9X A;  1A1W A;  4EWI A;  3LQR A;  2OF5 A;  3CRD A;  3YGS C;  2L9M A;  4M9S A;  1A1Z A;  4FH0 A;  3J63 A;  2DBG A;  1UCP A;  2YU0 A;  1DGN A;  4O9F A;  2HM2 Q;  1DDF A;  4JQW A;  2NSN A;  3J6J A;  4LWD A;  2MB9 A;  4DWN A;  2N97 A;  4IZ7 B;  2NZ7 A;  2GF5 A;  2BBR A;  4ZBW A;  2LWD A;  3CL3 A;  2MS8 A;  4N1L A;  1WH4 A;  2IB1 A;  4A2W A;  3KAT A;  1WXP A;  2VGQ A;  4I16 A;  2YQF A;  4O9L A;  4RHW E;  4F42 A;  3T6P A;  2N00 A;  4O7Q A;  2DBH A;  3MOP G;  4IZ5 E;  1WMG A;  2KN6 A;  2NAQ A;  1D2Z A;  2G7R A;  4A2Q A;  1NGR A;  1PN5 A;  1N3K A;  1E41 A;  2MS7 A;  2YGS A;  3QF2 A;  4UZ0 A;  4IZA B;  3EZQ A;  3LQQ A;  1CWW A;  2OF5 H;  2N80 A;  1ICH A;  4P4H I;  2A9I A;  2LS7 A;  2L6A A;  2N83 A;  2DBD A;  2A5Y B;  2MPC A;  4P4H A;  4NQK A;  4JUP A;  1C15 A; 
#chains in the Genus database with same CATH topology
 1D2Z B;  3YGS P;  2N7Z A;  1CY5 A;  2YVI A;  4N1J A;  2LWE A;  4D8O A;  2MJM A;  4E9M A;  2O71 A;  3EZQ B;  2N1F A;  2MN4 A;  3MOP A;  4QOB A;  4O6X A;  2M5V A;  4RHW A;  1FAD A;  2D96 A;  1Z6T A;  2B1W A;  1YGO A;  1E3Y A;  3MOP K;  2P1H A;  2DO9 A;  4F44 A;  4M9Z A;  2DBF A;  2BBZ A;  4N1K A;  2KM6 A;  2F1S A;  4M9X A;  1A1W A;  4EWI A;  3LQR A;  2OF5 A;  3CRD A;  3YGS C;  2L9M A;  4M9S A;  1A1Z A;  4FH0 A;  3J63 A;  2DBG A;  1UCP A;  2YU0 A;  1DGN A;  4O9F A;  2HM2 Q;  1DDF A;  4JQW A;  2NSN A;  3J6J A;  4LWD A;  2MB9 A;  4DWN A;  2N97 A;  4IZ7 B;  2NZ7 A;  2GF5 A;  2BBR A;  4ZBW A;  2LWD A;  3CL3 A;  2MS8 A;  4N1L A;  1WH4 A;  2IB1 A;  4A2W A;  3KAT A;  1WXP A;  2VGQ A;  4I16 A;  2YQF A;  4O9L A;  4RHW E;  4F42 A;  3T6P A;  2N00 A;  4O7Q A;  2DBH A;  3MOP G;  4IZ5 E;  1WMG A;  2KN6 A;  2NAQ A;  1D2Z A;  2G7R A;  4A2Q A;  1NGR A;  1PN5 A;  1N3K A;  1E41 A;  2MS7 A;  2YGS A;  3QF2 A;  4UZ0 A;  4IZA B;  3EZQ A;  3LQQ A;  1CWW A;  2OF5 H;  2N80 A;  1ICH A;  4P4H I;  2A9I A;  2XV9 A;  2LS7 A;  2L6A A;  2N83 A;  2DBD A;  2A5Y B;  2MPC A;  4P4H A;  4NQK A;  4JUP A;  1C15 A; 
#chains in the Genus database with same CATH homology
 1D2Z B;  3YGS P;  2N7Z A;  1CY5 A;  2YVI A;  4N1J A;  2LWE A;  4D8O A;  2MJM A;  4E9M A;  2O71 A;  3EZQ B;  2N1F A;  2MN4 A;  3MOP A;  4QOB A;  4O6X A;  2M5V A;  4RHW A;  1FAD A;  2D96 A;  1Z6T A;  2B1W A;  1YGO A;  1E3Y A;  3MOP K;  2P1H A;  2DO9 A;  4F44 A;  4M9Z A;  2DBF A;  2BBZ A;  4N1K A;  2KM6 A;  2F1S A;  4M9X A;  1A1W A;  4EWI A;  3LQR A;  2OF5 A;  3CRD A;  3YGS C;  2L9M A;  4M9S A;  1A1Z A;  4FH0 A;  3J63 A;  2DBG A;  1UCP A;  2YU0 A;  1DGN A;  4O9F A;  2HM2 Q;  1DDF A;  4JQW A;  2NSN A;  3J6J A;  4LWD A;  2MB9 A;  4DWN A;  2N97 A;  4IZ7 B;  2NZ7 A;  2GF5 A;  2BBR A;  4ZBW A;  2LWD A;  3CL3 A;  2MS8 A;  4N1L A;  1WH4 A;  2IB1 A;  4A2W A;  3KAT A;  1WXP A;  2VGQ A;  4I16 A;  2YQF A;  4O9L A;  4RHW E;  4F42 A;  3T6P A;  2N00 A;  4O7Q A;  2DBH A;  3MOP G;  4IZ5 E;  1WMG A;  2KN6 A;  2NAQ A;  1D2Z A;  2G7R A;  4A2Q A;  1NGR A;  1PN5 A;  1N3K A;  1E41 A;  2MS7 A;  2YGS A;  3QF2 A;  4UZ0 A;  4IZA B;  3EZQ A;  3LQQ A;  1CWW A;  2OF5 H;  2N80 A;  1ICH A;  4P4H I;  2A9I A;  2XV9 A;  2LS7 A;  2L6A A;  2N83 A;  2DBD A;  2A5Y B;  2MPC A;  4P4H A;  4NQK A;  4JUP A;  1C15 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...