2I2QA

Fission yeast cofilin
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
122
structure length
122
Chain Sequence
SFSGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEKDCRYAIYDFEFNLGEGVRNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Actin-binding protein
molecule keywords Cofilin
publication title Mechanism of Actin Filament Turnover by Severing and Nucleation at Different Concentrations of ADF/Cofilin.
pubmed doi rcsb
source organism Schizosaccharomyces pombe
total genus 35
structure length 122
sequence length 122
ec nomenclature
pdb deposition date 2006-08-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 2i2qA00
2LLFA 4CBUG 1SVRA 2FGHA 4CBXG 5IVUA 1KCQA 1Q8XA 5KYUB 1AHQA 1TMWA 2W0IA 4BEX1 5KYXB 1C0FS 1ESVS 2XFAA 3Q2BA 1WFSA 3EGDA 4JD2H 5KYWA 2MOTA 5A1MA 1P8ZG 1COFA 3EG9A 1DEJS 1AK7A 1C0GS 1UDMA 1WNJA 4LIZA 2MV2A 4S10C 2FH2A 2VILA 5KYUA 1NPHA 5HVKB 5KYXA 3TU5B 4KEFA 2NUPB 1F7SA 1M2OA 4CBWG 2MP4A 3EH1A 3FG6A 1T44G 1Q8GA 1AK6A 5L6WC 1HQZ1 1J72A 2D8BA 1T3XA 1VFQA 3EGXB 1WM4A 2FF6G 1T3YA 2FH1A 3FFNA 1M2VB 1EQYS 1SVQA 2L72A 1P8XA 2NUPA 1X67A 2FH3A 2VACA 1D0NA 2LJ8A 5FAEA 5KYNA 3EFOB 1M4JA 3CI5G 2FF3A 3CJBG 1YAGG 3EGXA 1SVYA 2FH4A 5KYYB 1QPVA 5FAFA 1M2VA 4PKHB 1VKKA 5HVKD 4KEDA 3L50A 1YVNG 1JHWA 2NUTB 2KVKA 3CJCG 2VIKA 3A5OS 3A5MS 2QTVA 4PKGG 2HD7A 3EFOA 3EG9B 2LXXA 3CIPG 1T2LA 1PD0A 1CFYA 4PKIG 1D4XG 5KYYA 3EH2A 1NMDG 1PCXA 3A5NS 1CNUA 2I2QA 3FFKA 1V6FA 1TVJA 2NUTA 3FG7A 4KEEA 5DD2A 3EGDB 5KYWB 1PD1A 1RGIG 1H1VG 2XF1A 1MDUA 3DAWB 1NLVG 3A5LS 4Z94G 1NM1G
chains in the Genus database with same CATH superfamily
2LLFA 4CBUG 1SVRA 2FGHA 4CBXG 5IVUA 1KCQA 1Q8XA 5KYUB 1AHQA 1TMWA 2W0IA 4BEX1 5KYXB 1C0FS 1ESVS 2XFAA 3Q2BA 1WFSA 3EGDA 4JD2H 5KYWA 2MOTA 5A1MA 1P8ZG 1COFA 3EG9A 1DEJS 1AK7A 1C0GS 1UDMA 1WNJA 4LIZA 2MV2A 4S10C 2FH2A 2VILA 5KYUA 1NPHA 5HVKB 5KYXA 3DA7A 3TU5B 4KEFA 2NUPB 1F7SA 1M2OA 4CBWG 2MP4A 3EH1A 3FG6A 1T44G 1Q8GA 1AK6A 5L6WC 1HQZ1 1J72A 2D8BA 1T3XA 1VFQA 3EGXB 1WM4A 2FF6G 1T3YA 2FH1A 3FFNA 1M2VB 1EQYS 1SVQA 2L72A 1P8XA 2NUPA 1X67A 2FH3A 2VACA 1D0NA 2LJ8A 5FAEA 5KYNA 3EFOB 1M4JA 3CI5G 2FF3A 3CJBG 1YAGG 3EGXA 1SVYA 2FH4A 5KYYB 1QPVA 5FAFA 1M2VA 4PKHB 1VKKA 5HVKD 4KEDA 3L50A 1YVNG 1JHWA 2NUTB 2KVKA 3CJCG 2VIKA 3A5OS 3A5MS 2QTVA 4PKGG 2HD7A 3EFOA 3EG9B 2LXXA 3CIPG 1T2LA 1PD0A 1CFYA 4PKIG 1D4XG 5KYYA 3EH2A 1NMDG 1PCXA 3A5NS 1CNUA 2I2QA 3FFKA 1V6FA 1TVJA 2NUTA 3FG7A 4KEEA 5DD2A 3EGDB 5KYWB 1PD1A 1RGIG 1H1VG 2XF1A 1MDUA 3DAWB 1NLVG 3A5LS 4Z94G 1NM1G
chains in the Genus database with same CATH topology
2LLFA 4CBUG 1SVRA 2FGHA 4CBXG 5IVUA 1KCQA 1Q8XA 5KYUB 1AHQA 1TMWA 2W0IA 4BEX1 5KYXB 1C0FS 1ESVS 2XFAA 3Q2BA 1WFSA 3EGDA 4JD2H 5KYWA 2MOTA 5A1MA 1P8ZG 1COFA 3EG9A 1DEJS 1AK7A 1C0GS 1UDMA 1WNJA 4LIZA 2MV2A 4S10C 2FH2A 2VILA 5KYUA 1NPHA 5HVKB 5KYXA 3DA7A 3TU5B 4KEFA 2NUPB 1F7SA 1M2OA 4CBWG 2MP4A 3EH1A 3FG6A 1T44G 1Q8GA 1AK6A 5L6WC 1HQZ1 1J72A 2D8BA 1T3XA 1VFQA 3EGXB 1WM4A 2FF6G 1T3YA 2FH1A 3FFNA 1M2VB 1EQYS 1SVQA 2L72A 1P8XA 2NUPA 1X67A 2FH3A 2VACA 1D0NA 2LJ8A 5FAEA 5KYNA 3EFOB 1M4JA 3CI5G 2FF3A 3CJBG 1YAGG 3EGXA 1SVYA 2FH4A 5KYYB 1QPVA 5FAFA 1M2VA 4PKHB 1VKKA 5HVKD 4KEDA 3L50A 1YVNG 1JHWA 2NUTB 2KVKA 3CJCG 2VIKA 3A5OS 3A5MS 2QTVA 4PKGG 2HD7A 3EFOA 3EG9B 2LXXA 3CIPG 1T2LA 1PD0A 1CFYA 4PKIG 1D4XG 5KYYA 3EH2A 1NMDG 1PCXA 3A5NS 1CNUA 2I2QA 3FFKA 1V6FA 1TVJA 2NUTA 3FG7A 4KEEA 5DD2A 3EGDB 5KYWB 1PD1A 1RGIG 1H1VG 2XF1A 1MDUA 3DAWB 1NLVG 3A5LS 4Z94G 1NM1G
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LLF A;  4CBU G;  1SVR A;  2FGH A;  4CBX G;  5IVU A;  1KCQ A;  1Q8X A;  5KYU B;  1AHQ A;  1TMW A;  2W0I A;  4BEX 1;  5KYX B;  1C0F S;  1ESV S;  2XFA A;  3Q2B A;  1WFS A;  3EGD A;  4JD2 H;  5KYW A;  2MOT A;  5A1M A;  1P8Z G;  1COF A;  3EG9 A;  1DEJ S;  1AK7 A;  1C0G S;  1UDM A;  1WNJ A;  4LIZ A;  2MV2 A;  4S10 C;  2FH2 A;  2VIL A;  5KYU A;  1NPH A;  5HVK B;  5KYX A;  3TU5 B;  4KEF A;  2NUP B;  1F7S A;  1M2O A;  4CBW G;  2MP4 A;  3EH1 A;  3FG6 A;  1T44 G;  1Q8G A;  1AK6 A;  5L6W C;  1HQZ 1;  1J72 A;  2D8B A;  1T3X A;  1VFQ A;  3EGX B;  1WM4 A;  2FF6 G;  1T3Y A;  2FH1 A;  3FFN A;  1M2V B;  1EQY S;  1SVQ A;  2L72 A;  1P8X A;  2NUP A;  1X67 A;  2FH3 A;  2VAC A;  1D0N A;  2LJ8 A;  5FAE A;  5KYN A;  3EFO B;  1M4J A;  3CI5 G;  2FF3 A;  3CJB G;  1YAG G;  3EGX A;  1SVY A;  2FH4 A;  5KYY B;  1QPV A;  5FAF A;  1M2V A;  4PKH B;  1VKK A;  5HVK D;  4KED A;  3L50 A;  1YVN G;  1JHW A;  2NUT B;  2KVK A;  3CJC G;  2VIK A;  3A5O S;  3A5M S;  2QTV A;  4PKG G;  2HD7 A;  3EFO A;  3EG9 B;  2LXX A;  3CIP G;  1T2L A;  1PD0 A;  1CFY A;  4PKI G;  1D4X G;  5KYY A;  3EH2 A;  1NMD G;  1PCX A;  3A5N S;  1CNU A;  2I2Q A;  3FFK A;  1V6F A;  1TVJ A;  2NUT A;  3FG7 A;  4KEE A;  5DD2 A;  3EGD B;  5KYW B;  1PD1 A;  1RGI G;  1H1V G;  2XF1 A;  1MDU A;  3DAW B;  1NLV G;  3A5L S;  4Z94 G;  1NM1 G; 
#chains in the Genus database with same CATH topology
 2LLF A;  4CBU G;  1SVR A;  2FGH A;  4CBX G;  5IVU A;  1KCQ A;  1Q8X A;  5KYU B;  1AHQ A;  1TMW A;  2W0I A;  4BEX 1;  5KYX B;  1C0F S;  1ESV S;  2XFA A;  3Q2B A;  1WFS A;  3EGD A;  4JD2 H;  5KYW A;  2MOT A;  5A1M A;  1P8Z G;  1COF A;  3EG9 A;  1DEJ S;  1AK7 A;  1C0G S;  1UDM A;  1WNJ A;  4LIZ A;  2MV2 A;  4S10 C;  2FH2 A;  2VIL A;  5KYU A;  1NPH A;  5HVK B;  5KYX A;  3DA7 A;  3TU5 B;  4KEF A;  2NUP B;  1F7S A;  1M2O A;  4CBW G;  2MP4 A;  3EH1 A;  3FG6 A;  1T44 G;  1Q8G A;  1AK6 A;  5L6W C;  1HQZ 1;  1J72 A;  2D8B A;  1T3X A;  1VFQ A;  3EGX B;  1WM4 A;  2FF6 G;  1T3Y A;  2FH1 A;  3FFN A;  1M2V B;  1EQY S;  1SVQ A;  2L72 A;  1P8X A;  2NUP A;  1X67 A;  2FH3 A;  2VAC A;  1D0N A;  2LJ8 A;  5FAE A;  5KYN A;  3EFO B;  1M4J A;  3CI5 G;  2FF3 A;  3CJB G;  1YAG G;  3EGX A;  1SVY A;  2FH4 A;  5KYY B;  1QPV A;  5FAF A;  1M2V A;  4PKH B;  1VKK A;  5HVK D;  4KED A;  3L50 A;  1YVN G;  1JHW A;  2NUT B;  2KVK A;  3CJC G;  2VIK A;  3A5O S;  3A5M S;  2QTV A;  4PKG G;  2HD7 A;  3EFO A;  3EG9 B;  2LXX A;  3CIP G;  1T2L A;  1PD0 A;  1CFY A;  4PKI G;  1D4X G;  5KYY A;  3EH2 A;  1NMD G;  1PCX A;  3A5N S;  1CNU A;  2I2Q A;  3FFK A;  1V6F A;  1TVJ A;  2NUT A;  3FG7 A;  4KEE A;  5DD2 A;  3EGD B;  5KYW B;  1PD1 A;  1RGI G;  1H1V G;  2XF1 A;  1MDU A;  3DAW B;  1NLV G;  3A5L S;  4Z94 G;  1NM1 G; 
#chains in the Genus database with same CATH homology
 2LLF A;  4CBU G;  1SVR A;  2FGH A;  4CBX G;  5IVU A;  1KCQ A;  1Q8X A;  5KYU B;  1AHQ A;  1TMW A;  2W0I A;  4BEX 1;  5KYX B;  1C0F S;  1ESV S;  2XFA A;  3Q2B A;  1WFS A;  3EGD A;  4JD2 H;  5KYW A;  2MOT A;  5A1M A;  1P8Z G;  1COF A;  3EG9 A;  1DEJ S;  1AK7 A;  1C0G S;  1UDM A;  1WNJ A;  4LIZ A;  2MV2 A;  4S10 C;  2FH2 A;  2VIL A;  5KYU A;  1NPH A;  5HVK B;  5KYX A;  3DA7 A;  3TU5 B;  4KEF A;  2NUP B;  1F7S A;  1M2O A;  4CBW G;  2MP4 A;  3EH1 A;  3FG6 A;  1T44 G;  1Q8G A;  1AK6 A;  5L6W C;  1HQZ 1;  1J72 A;  2D8B A;  1T3X A;  1VFQ A;  3EGX B;  1WM4 A;  2FF6 G;  1T3Y A;  2FH1 A;  3FFN A;  1M2V B;  1EQY S;  1SVQ A;  2L72 A;  1P8X A;  2NUP A;  1X67 A;  2FH3 A;  2VAC A;  1D0N A;  2LJ8 A;  5FAE A;  5KYN A;  3EFO B;  1M4J A;  3CI5 G;  2FF3 A;  3CJB G;  1YAG G;  3EGX A;  1SVY A;  2FH4 A;  5KYY B;  1QPV A;  5FAF A;  1M2V A;  4PKH B;  1VKK A;  5HVK D;  4KED A;  3L50 A;  1YVN G;  1JHW A;  2NUT B;  2KVK A;  3CJC G;  2VIK A;  3A5O S;  3A5M S;  2QTV A;  4PKG G;  2HD7 A;  3EFO A;  3EG9 B;  2LXX A;  3CIP G;  1T2L A;  1PD0 A;  1CFY A;  4PKI G;  1D4X G;  5KYY A;  3EH2 A;  1NMD G;  1PCX A;  3A5N S;  1CNU A;  2I2Q A;  3FFK A;  1V6F A;  1TVJ A;  2NUT A;  3FG7 A;  4KEE A;  5DD2 A;  3EGD B;  5KYW B;  1PD1 A;  1RGI G;  1H1V G;  2XF1 A;  1MDU A;  3DAW B;  1NLV G;  3A5L S;  4Z94 G;  1NM1 G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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