2I9IA

Crystal structure of helicobacter pylori protein hp0492
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
221
structure length
221
Chain Sequence
ERMKTSSEHVTPLDFNYPIHIVQAPQNHHVVGILTPRIQVSDNLKPYIDKFQDALINQIQTIFEKRGYQVLRFQDEKALNAQDKRKIFSVLDLKGWVGILEDLKMNLKDPNNPNLDTLVDQSSGSVWFNFYEPESNRVVHDFAVEVGTFQAMTYTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILNRMYAVVMKKAVTELTKENIDKYREAIDRMKGFK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hypothetical protein
publication title Crystal Structure of Helicobacter pylori hypothetical protein O25234
rcsb
source organism Helicobacter pylori
total genus 79
structure length 221
sequence length 221
ec nomenclature
pdb deposition date 2006-09-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.180 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Putative neuraminyllactose-binding hemagglutinin homolog like domain 2i9iA00
2I9IA 3BGHA
chains in the Genus database with same CATH superfamily
2L8TA 2LV2A 1X6EA 3ADJA 2EZ6A 1Z1BA 1RC7A 2EL5A 1I94E 2HC5A 2VE7C 2LUPB 4YY3E 1T4OA 2ADRA 1AAYA 4X8WA 2MKNA 1IQSA 1JK2A 4B3RE 1XMQE 2M9AA 1ZBTA 4ZYEA 1YFHA 5KL4A 2WZOA 4JYAE 2EOOA 2UXDE 1ZAAC 1EH8A 4DV0E 2LRSA 2MC6A 2EMGA 2PRTA 3C4TA 1RMDA 4HEIA 1SR9A 2M4IA 4M30A 4DV1E 2EN1A 3HTXA 4X65E 4YHHE 4GKKE 1YZ9A 1EH6A 2DMYA 2WBUA 4WXDA 2YTPA 2JXPA 4BHBA 2EPRA 4DV2E 1J5EE 1A1JA 2L2MA 4OOGC 2UU9E 4L5NC 3T1YE 4MLVA 3QG5C 1SFEA 2EPKX 1T38A 4B3ME 5A6BA 1PJQA 1F2IG 2UXBE 4R8OA 2YWQA 1IMUA 2EORA 1GZ6A 1AH5A 2KOUA 2EWLA 2MKDA 3JTZA 5LMUE 4F9AB 3MHHC 5KL6A 2LJHA 2FTXB 4NZVA 3T1HE 4KHPE 2CT1A 2LO3A 2DIXA 2ELYA 2LE2A 2V89A 4GEQB 2JY9A 2EPXA 3JAMC 2EPUA 2EOXA 4BBYA 1DQ3A 1WRJA 4WXCA 4KZSA 2I13A 5A69A 2YU8A 1X47A 4NHRA 1JK1A 2EM8A 4GZNC 1X3CA 2YSOA 4F9CB 1XNQE 2ZM6E 4DR1E 1EKZA 2MDGA 4WSPA 5A6BD 2CSHA 4DV3E 1QU6A 5IT9C 1A1KA 2RS7A 3HXLA 3BF2A 2FGGA 2UXCE 3IWBA 2VF1A 2EMAA 4IJDA 1L4SA 4R2EA 3AUZA 3KWRA 1YYWA 4TUGA 2E72A 2JOBA 3LMLA 5AE1A 4NXME 2YTQA 3ECRA 2LUQA 2N3HA 2B9DA 1HNXE 2F4VE 1UN6B 2GPIA 4JI3E 3EPJA 2EN7A 5TSEA 3LLHA 2R1FA 2JP9A 5KL2A 2YTFA 1X48A 2NUEA 5A6JA 3M99B 1PKPA 1O0WA 1PDAA 2YTOA 4O43A 5CFFE 1KYQA 2RQLA 2V83A 2EE8A 2EOZA 4JI2E 5IWAE 2ODRC 4JI5E 2EP3A 4F2JC 2DLKA 2YTGA 2YRKA 2L33A 4RH8A 4DR5E 1N32E 2BB8A 1A1FA 2NABA 4JI6E 3F6HA 2JWOA 1DGCA 2EPMX 2HHHE 2L2KB 1GQEA 4LF5E 3J7Yp 4M0VA 2EPAA 1B69A 1ZR9A 1A1HA 2ENHA 4R2CA 4DV4E 4ZYDA 4DR4E 2V88A 4BC9A 1HNWE 2EN4A 2EMYA 2EOIA 2VRDA 2EOFA 3OMLA 4MLQA 1WXRA 4HTGA 3C6KA 3F6GA 2LTSA 4WSGA 1HR0E 1YPNA 1TN9A 2EMHA 4K0KE 2V85A 2J7JA 2L6MA 1FKAE 1WHNA 4JI8E 5T6JA 4TUIA 3EPKA 2EM7A 3MSWA 2EN6A 2M1SA 2EQ0A 2YRHA 1X49A 3ZOQB 2Q8UA 5LMNE 2L3JA 2YT4A 4O24A 1TF6A 2EL4A 1MEYC 2EOMA 4B3SE 4DV7E 1WJPA 4DUYE 3DJWA 2EPCA 5LL6R 4FK5C 2HGHA 5AC4A 4LF8E 2EM6A 4JV5E 4DR2E 4LFBE 4O5GA 3IWDA 5A2QC 4NXNE 4DR3E 4F9BB 3EPHA 2IHR1 3VYXA 2B7VA 3THNA 1FJGE 1XMOE 2UUBE 2ELZA 5KL5A 4R2SA 1TF3A 1PJTA 2WCC3 4WYQB 2EOJA 4DV6E 2LBSB 2EN3A 2LMZA 2KONA 4L8NA 2EMXA 4LTYA 2DRPA 4JI0E 2YSPA 1A1IA 1STUA 2M7QA 4OX9E 1NCSA 3HPSA 2ENAA 4I8OA 4F54A 1IBME 4R2AA 4BC7A 5AE3A 2UUCE 1ZBQA 2YTEA 2V8QB 1T4LB 4GKJE 1QNTA 4X9JA 2NA2A 1RQ0A 2GHFA 3KZZA 2EM0A 2EN8A 1G2FC 1IBKE 3K6QA 4KWYA 2LTRA 4DR6E 1NEIA 3H09A 2DGCA 5A6AA 2RTXA 1N3GA 2YTNA 2YZTA 1YYKA 2JYAA 5F3WA 2EPNA 2B3TB 2LJUA 4P7DA 2A25A 4BHCA 2MC5A 5LLQA 3BIDA 3VHTB 3RMPA 2N8XA 3THOB 1J26A 2YTDA 5ADZA 2EN2A 3HQ1A 2K7IA 2V86A 4R2DA 2D9HA 2YPNA 5KL7A 1X6HA 2K4VA 3L00A 3KZYA 2WBSA 1UHZA 2EMIA 2ODRD 2BBGA 4DMIA 2E5LE 1BB8A 2R76A 4DUZE 3VYYA 4IS1C 4WPYA 3UK3C 4LF7E 2VQFE 3TQMA 2EM3A 1IQOA 4X62E 3ADGA 1A1GA 1UBDC 4LF9E 1YSAC 4O4KA 4Q28A 4M9VC 2EMKA 2RSIA 4LFCE 1MGTA 4F6MA 1YUIA 2VQEE 3OTOE 2UUAE 1N36E 5AASA 3J7AG 2RPCA 2EL6A 1DI2A 4M2ZA 3ADLA 2CTDA 2GLIA 2ENCA 1T4NA 4N4RB 1T39A 2B7TA 2DMIA 2CPNA 2EQ1A 3BBGA 3C4BA 4BS9A 1G2DC 1P47A 4R2QA 4AQYE 2HJJA 3JU0A 3EQ1A 2LT7A 4LU9A 2EMBA 2EOQA 4JI7E 1YUJA 1LLMC 3AV0A 2EQ3A 2L3CA 2RS6A 2EM2A 2L92A 4F6NA 5BR8E 5FLXC 2EPPA 1XNRE 2I9IA 2MDRA 5A6KA 3IWCA 3J81C 2EMLA 1GTKA 2N3GA 2EOHA 1EH7A 2LCEA 3FIGA 4JI4E 4WX9A 2EOSA 5AC5A 5DNYA 3ADIA 2L2NA 2EM4A 2JR1A 2RSMA 1ZU1A 3EPLA 2DLQA 4J8ZA 4DR7E 4RHBB 3DF6A 1N33E 4LF6E 3VK6A 1HNZE 2EJ4A 1KJKA 2JVAA 3P1XA 4ZYGA 4X64E 4ZYHA 2FV4B 1BBGA 1BBOA 2WBTA 2EMWA 3MHSC 1UILA 1X5WA 2YTJA 2NUFA 2E1MA 1PJSA 1A1LA 2EMFA 2JOXA 2EOYA 4LF4E 2V87A 5AE2A 2LVHA 2EM5A 5IXMB 1WHQA 4JI1E 2YU5A 4R2PA 3J80C 1N34E 2F8BA 5IV8B 2KHXA 3HPZA 4BMJA 3C6MA 2EPLX 1IBLE 1X6FA 2EM9A 4B3TE 3BGHA 2JPAA 2YTIA 4BCAA 2EPZA 4LFAE 4Q35B 2DB2A 2DSYA 4DV5E 2NUGA 2EMCA 4X66E 4R03A 2G7HA 4R2RA 2YRMA 1YYOA 2EMZA 2EPOA 4P78A 2H36X 2EOEA 4DKKA 4WFTA 5KL3A
chains in the Genus database with same CATH topology
2I9IA 3BGHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I9I A;  3BGH A; 
#chains in the Genus database with same CATH topology
 2L8T A;  2LV2 A;  1X6E A;  3ADJ A;  2EZ6 A;  1Z1B A;  1RC7 A;  2EL5 A;  1I94 E;  2HC5 A;  2VE7 C;  2LUP B;  4YY3 E;  1T4O A;  2ADR A;  1AAY A;  4X8W A;  2MKN A;  1IQS A;  1JK2 A;  4B3R E;  1XMQ E;  2M9A A;  1ZBT A;  4ZYE A;  1YFH A;  5KL4 A;  2WZO A;  4JYA E;  2EOO A;  2UXD E;  1ZAA C;  1EH8 A;  4DV0 E;  2LRS A;  2MC6 A;  2EMG A;  2PRT A;  3C4T A;  1RMD A;  4HEI A;  1SR9 A;  2M4I A;  4M30 A;  4DV1 E;  2EN1 A;  3HTX A;  4X65 E;  4YHH E;  4GKK E;  1YZ9 A;  1EH6 A;  2DMY A;  2WBU A;  4WXD A;  2YTP A;  2JXP A;  4BHB A;  2EPR A;  4DV2 E;  1J5E E;  1A1J A;  2L2M A;  4OOG C;  2UU9 E;  4L5N C;  3T1Y E;  4MLV A;  3QG5 C;  1SFE A;  2EPK X;  1T38 A;  4B3M E;  5A6B A;  1PJQ A;  1F2I G;  2UXB E;  4R8O A;  2YWQ A;  1IMU A;  2EOR A;  1GZ6 A;  1AH5 A;  2KOU A;  2EWL A;  2MKD A;  3JTZ A;  5LMU E;  4F9A B;  3MHH C;  5KL6 A;  2LJH A;  2FTX B;  4NZV A;  3T1H E;  4KHP E;  2CT1 A;  2LO3 A;  2DIX A;  2ELY A;  2LE2 A;  2V89 A;  4GEQ B;  2JY9 A;  2EPX A;  3JAM C;  2EPU A;  2EOX A;  4BBY A;  1DQ3 A;  1WRJ A;  4WXC A;  4KZS A;  2I13 A;  5A69 A;  2YU8 A;  1X47 A;  4NHR A;  1JK1 A;  2EM8 A;  4GZN C;  1X3C A;  2YSO A;  4F9C B;  1XNQ E;  2ZM6 E;  4DR1 E;  1EKZ A;  2MDG A;  4WSP A;  5A6B D;  2CSH A;  4DV3 E;  1QU6 A;  5IT9 C;  1A1K A;  2RS7 A;  3HXL A;  3BF2 A;  2FGG A;  2UXC E;  3IWB A;  2VF1 A;  2EMA A;  4IJD A;  1L4S A;  4R2E A;  3AUZ A;  3KWR A;  1YYW A;  4TUG A;  2E72 A;  2JOB A;  3LML A;  5AE1 A;  4NXM E;  2YTQ A;  3ECR A;  2LUQ A;  2N3H A;  2B9D A;  1HNX E;  2F4V E;  1UN6 B;  2GPI A;  4JI3 E;  3EPJ A;  2EN7 A;  5TSE A;  3LLH A;  2R1F A;  2JP9 A;  5KL2 A;  2YTF A;  1X48 A;  2NUE A;  5A6J A;  3M99 B;  1PKP A;  1O0W A;  1PDA A;  2YTO A;  4O43 A;  5CFF E;  1KYQ A;  2RQL A;  2V83 A;  2EE8 A;  2EOZ A;  4JI2 E;  5IWA E;  2ODR C;  4JI5 E;  2EP3 A;  4F2J C;  2DLK A;  2YTG A;  2YRK A;  2L33 A;  4RH8 A;  4DR5 E;  1N32 E;  2BB8 A;  1A1F A;  2NAB A;  4JI6 E;  3F6H A;  2JWO A;  1DGC A;  2EPM X;  2HHH E;  2L2K B;  1GQE A;  4LF5 E;  3J7Y p;  4M0V A;  2EPA A;  1B69 A;  1ZR9 A;  1A1H A;  2ENH A;  4R2C A;  4DV4 E;  4ZYD A;  4DR4 E;  2V88 A;  4BC9 A;  1HNW E;  2EN4 A;  2EMY A;  2EOI A;  2VRD A;  2EOF A;  3OML A;  4MLQ A;  1WXR A;  4HTG A;  3C6K A;  3F6G A;  2LTS A;  4WSG A;  1HR0 E;  1YPN A;  1TN9 A;  2EMH A;  4K0K E;  2V85 A;  2J7J A;  2L6M A;  1FKA E;  1WHN A;  4JI8 E;  5T6J A;  4TUI A;  3EPK A;  2EM7 A;  3MSW A;  2EN6 A;  2M1S A;  2EQ0 A;  2YRH A;  1X49 A;  3ZOQ B;  2Q8U A;  5LMN E;  2L3J A;  2YT4 A;  4O24 A;  1TF6 A;  2EL4 A;  1MEY C;  2EOM A;  4B3S E;  4DV7 E;  1WJP A;  4DUY E;  3DJW A;  2EPC A;  5LL6 R;  4FK5 C;  2HGH A;  5AC4 A;  4LF8 E;  2EM6 A;  4JV5 E;  4DR2 E;  4LFB E;  4O5G A;  3IWD A;  5A2Q C;  4NXN E;  4DR3 E;  4F9B B;  3EPH A;  2IHR 1;  3VYX A;  2B7V A;  3THN A;  1FJG E;  1XMO E;  2UUB E;  2ELZ A;  5KL5 A;  4R2S A;  1TF3 A;  1PJT A;  2WCC 3;  4WYQ B;  2EOJ A;  4DV6 E;  2LBS B;  2EN3 A;  2LMZ A;  2KON A;  4L8N A;  2EMX A;  4LTY A;  2DRP A;  4JI0 E;  2YSP A;  1A1I A;  1STU A;  2M7Q A;  4OX9 E;  1NCS A;  3HPS A;  2ENA A;  4I8O A;  4F54 A;  1IBM E;  4R2A A;  4BC7 A;  5AE3 A;  2UUC E;  1ZBQ A;  2YTE A;  2V8Q B;  1T4L B;  4GKJ E;  1QNT A;  4X9J A;  2NA2 A;  1RQ0 A;  2GHF A;  3KZZ A;  2EM0 A;  2EN8 A;  1G2F C;  1IBK E;  3K6Q A;  4KWY A;  2LTR A;  4DR6 E;  1NEI A;  3H09 A;  2DGC A;  5A6A A;  2RTX A;  1N3G A;  2YTN A;  2YZT A;  1YYK A;  2JYA A;  5F3W A;  2EPN A;  2B3T B;  2LJU A;  4P7D A;  2A25 A;  4BHC A;  2MC5 A;  5LLQ A;  3BID A;  3VHT B;  3RMP A;  2N8X A;  3THO B;  1J26 A;  2YTD A;  5ADZ A;  2EN2 A;  3HQ1 A;  2K7I A;  2V86 A;  4R2D A;  2D9H A;  2YPN A;  5KL7 A;  1X6H A;  2K4V A;  3L00 A;  3KZY A;  2WBS A;  1UHZ A;  2EMI A;  2ODR D;  2BBG A;  4DMI A;  2E5L E;  1BB8 A;  2R76 A;  4DUZ E;  3VYY A;  4IS1 C;  4WPY A;  3UK3 C;  4LF7 E;  2VQF E;  3TQM A;  2EM3 A;  1IQO A;  4X62 E;  3ADG A;  1A1G A;  1UBD C;  4LF9 E;  1YSA C;  4O4K A;  4Q28 A;  4M9V C;  2EMK A;  2RSI A;  4LFC E;  1MGT A;  4F6M A;  1YUI A;  2VQE E;  3OTO E;  2UUA E;  1N36 E;  5AAS A;  3J7A G;  2RPC A;  2EL6 A;  1DI2 A;  4M2Z A;  3ADL A;  2CTD A;  2GLI A;  2ENC A;  1T4N A;  4N4R B;  1T39 A;  2B7T A;  2DMI A;  2CPN A;  2EQ1 A;  3BBG A;  3C4B A;  4BS9 A;  1G2D C;  1P47 A;  4R2Q A;  4AQY E;  2HJJ A;  3JU0 A;  3EQ1 A;  2LT7 A;  4LU9 A;  2EMB A;  2EOQ A;  4JI7 E;  1YUJ A;  1LLM C;  3AV0 A;  2EQ3 A;  2L3C A;  2RS6 A;  2EM2 A;  2L92 A;  4F6N A;  5BR8 E;  5FLX C;  2EPP A;  1XNR E;  2I9I A;  2MDR A;  5A6K A;  3IWC A;  3J81 C;  2EML A;  1GTK A;  2N3G A;  2EOH A;  1EH7 A;  2LCE A;  3FIG A;  4JI4 E;  4WX9 A;  2EOS A;  5AC5 A;  5DNY A;  3ADI A;  2L2N A;  2EM4 A;  2JR1 A;  2RSM A;  1ZU1 A;  3EPL A;  2DLQ A;  4J8Z A;  4DR7 E;  4RHB B;  3DF6 A;  1N33 E;  4LF6 E;  3VK6 A;  1HNZ E;  2EJ4 A;  1KJK A;  2JVA A;  3P1X A;  4ZYG A;  4X64 E;  4ZYH A;  2FV4 B;  1BBG A;  1BBO A;  2WBT A;  2EMW A;  3MHS C;  1UIL A;  1X5W A;  2YTJ A;  2NUF A;  2E1M A;  1PJS A;  1A1L A;  2EMF A;  2JOX A;  2EOY A;  4LF4 E;  2V87 A;  5AE2 A;  2LVH A;  2EM5 A;  5IXM B;  1WHQ A;  4JI1 E;  2YU5 A;  4R2P A;  3J80 C;  1N34 E;  2F8B A;  5IV8 B;  2KHX A;  3HPZ A;  4BMJ A;  3C6M A;  2EPL X;  1IBL E;  1X6F A;  2EM9 A;  4B3T E;  3BGH A;  2JPA A;  2YTI A;  4BCA A;  2EPZ A;  4LFA E;  4Q35 B;  2DB2 A;  2DSY A;  4DV5 E;  2NUG A;  2EMC A;  4X66 E;  4R03 A;  2G7H A;  4R2R A;  2YRM A;  1YYO A;  2EMZ A;  2EPO A;  4P78 A;  2H36 X;  2EOE A;  4DKK A;  4WFT A;  5KL3 A; 
#chains in the Genus database with same CATH homology
 2I9I A;  3BGH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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