2II4A

Crystal structure of a cubic core of the dihydrolipoamide acyltransferase (e2b) component in the branched-chain alpha-ketoacid dehydrogenase complex (bckdc), coenzyme a-bound form
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
234
structure length
234
Chain Sequence
GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Lipoamide acyltransferase component of branched-chain alpha-
publication title A synchronized substrate-gating mechanism revealed by cubic-core structure of the bovine branched-chain alpha-ketoacid dehydrogenase complex.
pubmed doi rcsb
source organism Bos taurus
total genus 66
structure length 234
sequence length 234
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 2.3.1.168: Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase.
pdb deposition date 2006-09-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00198 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2ii4A01
4KECA 5T3EA 1XMDA 2I9DA 3B30A 3L60A 2II3A 2II5A 2E1UA 2ZBAA 1DPDA 2E1TA 1DPCA 2E1VA 1SCZA 1EACA 1C4TA 5DU9A 4JN5A 5FANA 1L5AA 1EAEA 4JN3A 4G2MA 2CLAA 4KE4A 2II4A 5DUAA 1EAFA 3CLAA 1E2OA 1Q23A 2IHWA 2RKTA 1EABA 3FOTA 3B2SA 3U9BA 5FALA 2RKVA 5KJVA 2VSQA 5KJUA 5KJWA 1XMCA 1CLAA 1XL7A 1NOCB 3U9FA 1CIAA 1EADA 1XL8A 1PD5A 4HVMA 3MAEA 4G0BA 5KJSA 4G22A 4N72A 2BGHA 1QCAA 3FP0A 1Q9JA 2JGPA 4CLAA 1EAAA 1DPBA 5KJTA 2XR7A 2XHGA
chains in the Genus database with same CATH superfamily
4KECA 3L60A 2E1TA 4JN3A 4G2MA 4KE4A 3CLAA 1E2OA 1Q23A 3U9BA 5FALA 4EP9A 5KJWA 1XMCA 1S5OA 1XL7A 2FY5A 1CIAA 2FY2A 1PD5A 1Q6XA 3MAEA 3FP0A 2H3PA 2FY4A 1DPBA 2FY3A 2I9DA 3B30A 1NDIA 2II3A 2II5A 2E1UA 2ZBAA 2E1VA 1NDBA 1EACA 1C4TA 5DU9A 1EAEA 2CLAA 2II4A 1EAFA 4EPHA 3B2SA 2VSQA 1NDFA 1CLAA 1NOCB 2H4TA 4G22A 4N72A 2JGPA 2FYOA 4CLAA 2RCUA 5T3EA 1SCZA 1L5AA 5FANA 2H3WA 1T7NA 2RKTA 1T7OA 5KJUA 1T1UA 3U9FA 1EADA 4HVMA 4G0BA 1QCAA 1EAAA 5KJTA 2XR7A 2XHGA 1XMDA 2H3UA 1DPDA 1DPCA 4JN5A 4EYWA 5DUAA 2IHWA 5KJVA 1EABA 3FOTA 2RKVA 2DEBA 1T7QA 1XL8A 5KJSA 2BGHA 1Q9JA 1NM8A 2FW3A
chains in the Genus database with same CATH topology
4KECA 5T3EA 1XMDA 2I9DA 3B30A 3L60A 2II3A 2II5A 2E1UA 2ZBAA 1DPDA 2E1TA 1DPCA 2E1VA 1SCZA 1EACA 1C4TA 5DU9A 4JN5A 5FANA 1L5AA 1EAEA 4JN3A 4G2MA 2CLAA 4KE4A 2II4A 5DUAA 1EAFA 3CLAA 1E2OA 1Q23A 2IHWA 2RKTA 1EABA 3FOTA 3B2SA 3U9BA 5FALA 2RKVA 5KJVA 2VSQA 5KJUA 5KJWA 1XMCA 1CLAA 1XL7A 1NOCB 3U9FA 1CIAA 1EADA 1XL8A 1PD5A 4HVMA 3MAEA 4G0BA 5KJSA 4G22A 4N72A 2BGHA 1QCAA 3FP0A 1Q9JA 2JGPA 4CLAA 1EAAA 1DPBA 5KJTA 2XR7A 2XHGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KEC A;  5T3E A;  1XMD A;  2I9D A;  3B30 A;  3L60 A;  2II3 A;  2II5 A;  2E1U A;  2ZBA A;  1DPD A;  2E1T A;  1DPC A;  2E1V A;  1SCZ A;  1EAC A;  1C4T A;  5DU9 A;  4JN5 A;  5FAN A;  1L5A A;  1EAE A;  4JN3 A;  4G2M A;  2CLA A;  4KE4 A;  2II4 A;  5DUA A;  1EAF A;  3CLA A;  1E2O A;  1Q23 A;  2IHW A;  2RKT A;  1EAB A;  3FOT A;  3B2S A;  3U9B A;  5FAL A;  2RKV A;  5KJV A;  2VSQ A;  5KJU A;  5KJW A;  1XMC A;  1CLA A;  1XL7 A;  1NOC B;  3U9F A;  1CIA A;  1EAD A;  1XL8 A;  1PD5 A;  4HVM A;  3MAE A;  4G0B A;  5KJS A;  4G22 A;  4N72 A;  2BGH A;  1QCA A;  3FP0 A;  1Q9J A;  2JGP A;  4CLA A;  1EAA A;  1DPB A;  5KJT A;  2XR7 A;  2XHG A; 
#chains in the Genus database with same CATH topology
 4KEC A;  3L60 A;  2E1T A;  4JN3 A;  4G2M A;  4KE4 A;  3CLA A;  1E2O A;  1Q23 A;  3U9B A;  5FAL A;  4EP9 A;  5KJW A;  1XMC A;  1S5O A;  1XL7 A;  2FY5 A;  1CIA A;  2FY2 A;  1PD5 A;  1Q6X A;  3MAE A;  3FP0 A;  2H3P A;  2FY4 A;  1DPB A;  2FY3 A;  2I9D A;  3B30 A;  1NDI A;  2II3 A;  2II5 A;  2E1U A;  2ZBA A;  2E1V A;  1NDB A;  1EAC A;  1C4T A;  5DU9 A;  1EAE A;  2CLA A;  2II4 A;  1EAF A;  4EPH A;  3B2S A;  2VSQ A;  1NDF A;  1CLA A;  1NOC B;  2H4T A;  4G22 A;  4N72 A;  2JGP A;  2FYO A;  4CLA A;  2RCU A;  5T3E A;  1SCZ A;  1L5A A;  5FAN A;  2H3W A;  1T7N A;  2RKT A;  1T7O A;  5KJU A;  1T1U A;  3U9F A;  1EAD A;  4HVM A;  4G0B A;  1QCA A;  1EAA A;  5KJT A;  2XR7 A;  2XHG A;  1XMD A;  2H3U A;  1DPD A;  1DPC A;  4JN5 A;  4EYW A;  5DUA A;  2IHW A;  5KJV A;  1EAB A;  3FOT A;  2RKV A;  2DEB A;  1T7Q A;  1XL8 A;  5KJS A;  2BGH A;  1Q9J A;  1NM8 A;  2FW3 A; 
#chains in the Genus database with same CATH homology
 4KEC A;  5T3E A;  1XMD A;  2I9D A;  3B30 A;  3L60 A;  2II3 A;  2II5 A;  2E1U A;  2ZBA A;  1DPD A;  2E1T A;  1DPC A;  2E1V A;  1SCZ A;  1EAC A;  1C4T A;  5DU9 A;  4JN5 A;  5FAN A;  1L5A A;  1EAE A;  4JN3 A;  4G2M A;  2CLA A;  4KE4 A;  2II4 A;  5DUA A;  1EAF A;  3CLA A;  1E2O A;  1Q23 A;  2IHW A;  2RKT A;  1EAB A;  3FOT A;  3B2S A;  3U9B A;  5FAL A;  2RKV A;  5KJV A;  2VSQ A;  5KJU A;  5KJW A;  1XMC A;  1CLA A;  1XL7 A;  1NOC B;  3U9F A;  1CIA A;  1EAD A;  1XL8 A;  1PD5 A;  4HVM A;  3MAE A;  4G0B A;  5KJS A;  4G22 A;  4N72 A;  2BGH A;  1QCA A;  3FP0 A;  1Q9J A;  2JGP A;  4CLA A;  1EAA A;  1DPB A;  5KJT A;  2XR7 A;  2XHG A; 
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similar chains in the Genus database (?% sequence similarity)
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