2IUCA

Structure of alkaline phosphatase from the antarctic bacterium tab5
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
Knots found
sequence length
344
structure length
340
Chain Sequence
KTPKNVILLISDGAGLSQISSTFYFKEGTPNYTQFKNIGLIKTSSSREDVTDSASGATAFSCGIKTYNAAIGVADDSTAVKSIVEIAALNNIKTGVVATSSITHATPASFYAHALNRGLEEEIAMDMTESDLDFFAGGGLNYFTSRKDKKDVLAILKGNQFTINTTGLTDFSSIASNRKMGFLLADEAMPTMESGRGNFLSAATDLAIQFLSKDNSAFFIMSEGSQIDWGGHANNASYLISEINDFDDAIGTALAFAKKDGNTLVIVTSDHETGGFTLAAKKNKREYSDYTSIGPSFSTGGHSATLIPVFAYGPGSEEFIGIYENNEIFHKILKVTKWNQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords ALKALINE PHOSPHATASE
publication title Crystal Structure of Alkaline Phosphatase from the Antarctic Bacterium Tab5.
pubmed doi rcsb
source organism Antarctic bacterium tab5
total genus 133
structure length 340
sequence length 344
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2006-06-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2iucA00
5GOVA 1ELXA 3T02A 2GSUA 2IUCA 2W8SA 4LR9A 1AJBA 1Y6VA 1E3CP 3IGYB 3WAVA 4ZG6A 1EW8A 2W8DA 4GTWA 1SHNA 2GLQA 3KD8A 1EW9A 3BDFA 3UO0A 5LRNA 2ZKTA 4FDJA 4LREA 1ALIA 3NKPA 4KAYA 3DYCA 1Y7AA 5IJQA 3TG0A 3WAXA 2ANHA 2GSNA 1SHQA 1ALHA 4N7TA 3T00A 5EGEA 4CXSA 2X98A 2GSOA 4UOOA 4CYRA 3NKNA 5EGHA 1ED9A 4ZGAA 2VQRA 2W5WA 2W5RA 1B8JA 5LQQA 1N2LA 1KHNA 3DPCA 5IJSA 3M7VA 1AJCA 1ALKA 4ZG7A 3TX0A 4LR2A 1URAA 3UN5A 3BDHA 3SZYA 2IFYA 5DLVA 5KXAA 1KH4A 2QZUA 4KJGA 2IUCB 4TN0A 4UPHA 4LRFA 1E1ZP 4UOPA 1KH5A 3ED4A 5TJ3A 3UNYA 3WAYA 2RH6A 2D1GA 4LRBA 3NKMA 4UPIA 2W5TA 1ALJA 1HJKA 1AUKA 3NKQA 1P49A 4UORA 4UPKA 4GTXA 4CXUA 1HQAA 1HDHA 3BDGA 2XR9A 3NKOA 5HRTA 3UN2A 1AJAA 5DLTA 2XRGA 3TWZA 3WAWA 5L0EA 3IGZB 5AJ9A 4NWJA 5INHA 2W5QA 3M8ZA 4KAVA 1ANJA 5C66A 1N2KA 1ZEFA 5DLWA 3OT9A 3NVLA 4FDIA 1ZEDA 4B56A 4LRAA 4UPLA 3M8YA 4YR1A 4GTYA 4GTZA 1EI6A 1ELZA 3CMRA 1O98A 3B5QA 1ZEBA 3T01A 2W5SA 4LR8A 5K4PA 4KJDA 4MY4A 4NWXA 1KH9A 1E33P 1EW2A 3IDDA 4MHXA 3UN3A 3WBHA 1O99A 4CXKA 1KHKA 3MK2A 1E2SP 1KHLA 1AJDA 1KHJA 2G9YA 4KM4A 3E2DA 4LQYA 5LIAA 4MIVA 1URBA 2GA3A 3BDGB 5GRRA 3Q3QA 3MK0A 3NKRA 4QAXA 5L0KA 3M8WA 1EJJA 5LRMA 4LR7A 4ZG9A 2W5XA 1EQJA 4LRCA 3LXQA 1ANIA 1KH7A 4LRDA 1FSUA 4CYSA 3A52A 3SZZA 1ED8A 2W5VA 3MK1A 1K7HA 1ELYA 5L0BA
chains in the Genus database with same CATH superfamily
5GOVA 1ELXA 3T02A 2GSUA 2IUCA 2W8SA 4LR9A 1AJBA 1Y6VA 1E3CP 3IGYB 3WAVA 4ZG6A 1EW8A 2W8DA 4GTWA 1SHNA 2GLQA 3KD8A 1EW9A 3BDFA 3UO0A 5LRNA 2ZKTA 4FDJA 4LREA 1ALIA 3NKPA 4KAYA 3DYCA 1Y7AA 5IJQA 3TG0A 3WAXA 2ANHA 2GSNA 1SHQA 1ALHA 4N7TA 3T00A 5EGEA 4CXSA 2X98A 2GSOA 4UOOA 4CYRA 3NKNA 5EGHA 1ED9A 4ZGAA 2VQRA 2W5WA 2W5RA 1B8JA 5LQQA 1N2LA 1KHNA 3DPCA 5IJSA 3M7VA 1AJCA 1ALKA 4ZG7A 3TX0A 4LR2A 1URAA 3UN5A 3BDHA 3SZYA 2IFYA 5DLVA 5KXAA 1KH4A 2QZUA 4KJGA 2IUCB 4TN0A 4UPHA 4LRFA 1E1ZP 4UOPA 1KH5A 3ED4A 5TJ3A 3UNYA 3WAYA 2RH6A 2D1GA 4LRBA 3NKMA 4UPIA 2W5TA 1ALJA 1HJKA 1AUKA 3NKQA 1P49A 4UORA 4UPKA 4GTXA 4CXUA 1HQAA 1HDHA 3BDGA 2XR9A 3NKOA 5HRTA 3UN2A 1AJAA 5DLTA 2XRGA 3TWZA 3WAWA 5L0EA 3IGZB 5AJ9A 4NWJA 5INHA 2W5QA 3M8ZA 4KAVA 1ANJA 5C66A 1N2KA 1ZEFA 5DLWA 3OT9A 3NVLA 4FDIA 1ZEDA 4B56A 4LRAA 4UPLA 3M8YA 4YR1A 4GTYA 4GTZA 1EI6A 1ELZA 3CMRA 1O98A 3B5QA 1ZEBA 3T01A 2W5SA 4LR8A 5K4PA 4KJDA 4MY4A 4NWXA 1KH9A 1E33P 1EW2A 3IDDA 4MHXA 3UN3A 3WBHA 1O99A 4CXKA 1KHKA 3MK2A 1E2SP 1KHLA 1AJDA 1KHJA 2G9YA 4KM4A 3E2DA 4LQYA 5LIAA 4MIVA 1URBA 2GA3A 3BDGB 5GRRA 3Q3QA 3MK0A 3NKRA 4QAXA 5L0KA 3M8WA 1EJJA 5LRMA 4LR7A 4ZG9A 2W5XA 1EQJA 4LRCA 3LXQA 1ANIA 1KH7A 4LRDA 1FSUA 4CYSA 3A52A 3SZZA 1ED8A 2W5VA 3MK1A 1K7HA 1ELYA 5L0BA
chains in the Genus database with same CATH topology
5GOVA 1ELXA 3T02A 2GSUA 2IUCA 2W8SA 4LR9A 1AJBA 1Y6VA 1E3CP 3IGYB 3WAVA 4ZG6A 1EW8A 2W8DA 4GTWA 1SHNA 2GLQA 3KD8A 1EW9A 3BDFA 3UO0A 5LRNA 2ZKTA 4FDJA 4LREA 1ALIA 3NKPA 4KAYA 3DYCA 1Y7AA 5IJQA 3TG0A 3WAXA 2ANHA 2GSNA 1SHQA 1ALHA 4N7TA 3T00A 5EGEA 4CXSA 2X98A 2GSOA 4UOOA 4CYRA 3NKNA 5EGHA 1ED9A 4ZGAA 2VQRA 2W5WA 2W5RA 1B8JA 5LQQA 1N2LA 1KHNA 3DPCA 5IJSA 3M7VA 1AJCA 1ALKA 4ZG7A 3TX0A 4LR2A 1URAA 3UN5A 3BDHA 3SZYA 2IFYA 5DLVA 5KXAA 1KH4A 2QZUA 4KJGA 2IUCB 4TN0A 4UPHA 4LRFA 1E1ZP 4UOPA 1KH5A 3ED4A 5TJ3A 3UNYA 3WAYA 2RH6A 2D1GA 4LRBA 3NKMA 4UPIA 2W5TA 1ALJA 1HJKA 1AUKA 3NKQA 1P49A 4UORA 4UPKA 4GTXA 4CXUA 1HQAA 1HDHA 3BDGA 2XR9A 3NKOA 5HRTA 3UN2A 1AJAA 5DLTA 2XRGA 3TWZA 3WAWA 5L0EA 3IGZB 5AJ9A 4NWJA 5INHA 2W5QA 3M8ZA 4KAVA 1ANJA 5C66A 1N2KA 1ZEFA 5DLWA 3OT9A 3NVLA 4FDIA 1ZEDA 4B56A 4LRAA 4UPLA 3M8YA 4YR1A 4GTYA 4GTZA 1EI6A 1ELZA 3CMRA 1O98A 3B5QA 1ZEBA 3T01A 2W5SA 4LR8A 5K4PA 4KJDA 4MY4A 4NWXA 1KH9A 1E33P 1EW2A 3IDDA 4MHXA 3UN3A 3WBHA 1O99A 4CXKA 1KHKA 3MK2A 1E2SP 1KHLA 1AJDA 1KHJA 2G9YA 4KM4A 3E2DA 4LQYA 5LIAA 4MIVA 1URBA 2GA3A 3BDGB 5GRRA 3Q3QA 3MK0A 3NKRA 4QAXA 5L0KA 3M8WA 1EJJA 5LRMA 4LR7A 4ZG9A 2W5XA 1EQJA 4LRCA 3LXQA 1ANIA 1KH7A 4LRDA 1FSUA 4CYSA 3A52A 3SZZA 1ED8A 2W5VA 3MK1A 1K7HA 1ELYA 5L0BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GOV A;  1ELX A;  3T02 A;  2GSU A;  2IUC A;  2W8S A;  4LR9 A;  1AJB A;  1Y6V A;  1E3C P;  3IGY B;  3WAV A;  4ZG6 A;  1EW8 A;  2W8D A;  4GTW A;  1SHN A;  2GLQ A;  3KD8 A;  1EW9 A;  3BDF A;  3UO0 A;  5LRN A;  2ZKT A;  4FDJ A;  4LRE A;  1ALI A;  3NKP A;  4KAY A;  3DYC A;  1Y7A A;  5IJQ A;  3TG0 A;  3WAX A;  2ANH A;  2GSN A;  1SHQ A;  1ALH A;  4N7T A;  3T00 A;  5EGE A;  4CXS A;  2X98 A;  2GSO A;  4UOO A;  4CYR A;  3NKN A;  5EGH A;  1ED9 A;  4ZGA A;  2VQR A;  2W5W A;  2W5R A;  1B8J A;  5LQQ A;  1N2L A;  1KHN A;  3DPC A;  5IJS A;  3M7V A;  1AJC A;  1ALK A;  4ZG7 A;  3TX0 A;  4LR2 A;  1URA A;  3UN5 A;  3BDH A;  3SZY A;  2IFY A;  5DLV A;  5KXA A;  1KH4 A;  2QZU A;  4KJG A;  2IUC B;  4TN0 A;  4UPH A;  4LRF A;  1E1Z P;  4UOP A;  1KH5 A;  3ED4 A;  5TJ3 A;  3UNY A;  3WAY A;  2RH6 A;  2D1G A;  4LRB A;  3NKM A;  4UPI A;  2W5T A;  1ALJ A;  1HJK A;  1AUK A;  3NKQ A;  1P49 A;  4UOR A;  4UPK A;  4GTX A;  4CXU A;  1HQA A;  1HDH A;  3BDG A;  2XR9 A;  3NKO A;  5HRT A;  3UN2 A;  1AJA A;  5DLT A;  2XRG A;  3TWZ A;  3WAW A;  5L0E A;  3IGZ B;  5AJ9 A;  4NWJ A;  5INH A;  2W5Q A;  3M8Z A;  4KAV A;  1ANJ A;  5C66 A;  1N2K A;  1ZEF A;  5DLW A;  3OT9 A;  3NVL A;  4FDI A;  1ZED A;  4B56 A;  4LRA A;  4UPL A;  3M8Y A;  4YR1 A;  4GTY A;  4GTZ A;  1EI6 A;  1ELZ A;  3CMR A;  1O98 A;  3B5Q A;  1ZEB A;  3T01 A;  2W5S A;  4LR8 A;  5K4P A;  4KJD A;  4MY4 A;  4NWX A;  1KH9 A;  1E33 P;  1EW2 A;  3IDD A;  4MHX A;  3UN3 A;  3WBH A;  1O99 A;  4CXK A;  1KHK A;  3MK2 A;  1E2S P;  1KHL A;  1AJD A;  1KHJ A;  2G9Y A;  4KM4 A;  3E2D A;  4LQY A;  5LIA A;  4MIV A;  1URB A;  2GA3 A;  3BDG B;  5GRR A;  3Q3Q A;  3MK0 A;  3NKR A;  4QAX A;  5L0K A;  3M8W A;  1EJJ A;  5LRM A;  4LR7 A;  4ZG9 A;  2W5X A;  1EQJ A;  4LRC A;  3LXQ A;  1ANI A;  1KH7 A;  4LRD A;  1FSU A;  4CYS A;  3A52 A;  3SZZ A;  1ED8 A;  2W5V A;  3MK1 A;  1K7H A;  1ELY A;  5L0B A; 
#chains in the Genus database with same CATH topology
 5GOV A;  1ELX A;  3T02 A;  2GSU A;  2IUC A;  2W8S A;  4LR9 A;  1AJB A;  1Y6V A;  1E3C P;  3IGY B;  3WAV A;  4ZG6 A;  1EW8 A;  2W8D A;  4GTW A;  1SHN A;  2GLQ A;  3KD8 A;  1EW9 A;  3BDF A;  3UO0 A;  5LRN A;  2ZKT A;  4FDJ A;  4LRE A;  1ALI A;  3NKP A;  4KAY A;  3DYC A;  1Y7A A;  5IJQ A;  3TG0 A;  3WAX A;  2ANH A;  2GSN A;  1SHQ A;  1ALH A;  4N7T A;  3T00 A;  5EGE A;  4CXS A;  2X98 A;  2GSO A;  4UOO A;  4CYR A;  3NKN A;  5EGH A;  1ED9 A;  4ZGA A;  2VQR A;  2W5W A;  2W5R A;  1B8J A;  5LQQ A;  1N2L A;  1KHN A;  3DPC A;  5IJS A;  3M7V A;  1AJC A;  1ALK A;  4ZG7 A;  3TX0 A;  4LR2 A;  1URA A;  3UN5 A;  3BDH A;  3SZY A;  2IFY A;  5DLV A;  5KXA A;  1KH4 A;  2QZU A;  4KJG A;  2IUC B;  4TN0 A;  4UPH A;  4LRF A;  1E1Z P;  4UOP A;  1KH5 A;  3ED4 A;  5TJ3 A;  3UNY A;  3WAY A;  2RH6 A;  2D1G A;  4LRB A;  3NKM A;  4UPI A;  2W5T A;  1ALJ A;  1HJK A;  1AUK A;  3NKQ A;  1P49 A;  4UOR A;  4UPK A;  4GTX A;  4CXU A;  1HQA A;  1HDH A;  3BDG A;  2XR9 A;  3NKO A;  5HRT A;  3UN2 A;  1AJA A;  5DLT A;  2XRG A;  3TWZ A;  3WAW A;  5L0E A;  3IGZ B;  5AJ9 A;  4NWJ A;  5INH A;  2W5Q A;  3M8Z A;  4KAV A;  1ANJ A;  5C66 A;  1N2K A;  1ZEF A;  5DLW A;  3OT9 A;  3NVL A;  4FDI A;  1ZED A;  4B56 A;  4LRA A;  4UPL A;  3M8Y A;  4YR1 A;  4GTY A;  4GTZ A;  1EI6 A;  1ELZ A;  3CMR A;  1O98 A;  3B5Q A;  1ZEB A;  3T01 A;  2W5S A;  4LR8 A;  5K4P A;  4KJD A;  4MY4 A;  4NWX A;  1KH9 A;  1E33 P;  1EW2 A;  3IDD A;  4MHX A;  3UN3 A;  3WBH A;  1O99 A;  4CXK A;  1KHK A;  3MK2 A;  1E2S P;  1KHL A;  1AJD A;  1KHJ A;  2G9Y A;  4KM4 A;  3E2D A;  4LQY A;  5LIA A;  4MIV A;  1URB A;  2GA3 A;  3BDG B;  5GRR A;  3Q3Q A;  3MK0 A;  3NKR A;  4QAX A;  5L0K A;  3M8W A;  1EJJ A;  5LRM A;  4LR7 A;  4ZG9 A;  2W5X A;  1EQJ A;  4LRC A;  3LXQ A;  1ANI A;  1KH7 A;  4LRD A;  1FSU A;  4CYS A;  3A52 A;  3SZZ A;  1ED8 A;  2W5V A;  3MK1 A;  1K7H A;  1ELY A;  5L0B A; 
#chains in the Genus database with same CATH homology
 5GOV A;  1ELX A;  3T02 A;  2GSU A;  2IUC A;  2W8S A;  4LR9 A;  1AJB A;  1Y6V A;  1E3C P;  3IGY B;  3WAV A;  4ZG6 A;  1EW8 A;  2W8D A;  4GTW A;  1SHN A;  2GLQ A;  3KD8 A;  1EW9 A;  3BDF A;  3UO0 A;  5LRN A;  2ZKT A;  4FDJ A;  4LRE A;  1ALI A;  3NKP A;  4KAY A;  3DYC A;  1Y7A A;  5IJQ A;  3TG0 A;  3WAX A;  2ANH A;  2GSN A;  1SHQ A;  1ALH A;  4N7T A;  3T00 A;  5EGE A;  4CXS A;  2X98 A;  2GSO A;  4UOO A;  4CYR A;  3NKN A;  5EGH A;  1ED9 A;  4ZGA A;  2VQR A;  2W5W A;  2W5R A;  1B8J A;  5LQQ A;  1N2L A;  1KHN A;  3DPC A;  5IJS A;  3M7V A;  1AJC A;  1ALK A;  4ZG7 A;  3TX0 A;  4LR2 A;  1URA A;  3UN5 A;  3BDH A;  3SZY A;  2IFY A;  5DLV A;  5KXA A;  1KH4 A;  2QZU A;  4KJG A;  2IUC B;  4TN0 A;  4UPH A;  4LRF A;  1E1Z P;  4UOP A;  1KH5 A;  3ED4 A;  5TJ3 A;  3UNY A;  3WAY A;  2RH6 A;  2D1G A;  4LRB A;  3NKM A;  4UPI A;  2W5T A;  1ALJ A;  1HJK A;  1AUK A;  3NKQ A;  1P49 A;  4UOR A;  4UPK A;  4GTX A;  4CXU A;  1HQA A;  1HDH A;  3BDG A;  2XR9 A;  3NKO A;  5HRT A;  3UN2 A;  1AJA A;  5DLT A;  2XRG A;  3TWZ A;  3WAW A;  5L0E A;  3IGZ B;  5AJ9 A;  4NWJ A;  5INH A;  2W5Q A;  3M8Z A;  4KAV A;  1ANJ A;  5C66 A;  1N2K A;  1ZEF A;  5DLW A;  3OT9 A;  3NVL A;  4FDI A;  1ZED A;  4B56 A;  4LRA A;  4UPL A;  3M8Y A;  4YR1 A;  4GTY A;  4GTZ A;  1EI6 A;  1ELZ A;  3CMR A;  1O98 A;  3B5Q A;  1ZEB A;  3T01 A;  2W5S A;  4LR8 A;  5K4P A;  4KJD A;  4MY4 A;  4NWX A;  1KH9 A;  1E33 P;  1EW2 A;  3IDD A;  4MHX A;  3UN3 A;  3WBH A;  1O99 A;  4CXK A;  1KHK A;  3MK2 A;  1E2S P;  1KHL A;  1AJD A;  1KHJ A;  2G9Y A;  4KM4 A;  3E2D A;  4LQY A;  5LIA A;  4MIV A;  1URB A;  2GA3 A;  3BDG B;  5GRR A;  3Q3Q A;  3MK0 A;  3NKR A;  4QAX A;  5L0K A;  3M8W A;  1EJJ A;  5LRM A;  4LR7 A;  4ZG9 A;  2W5X A;  1EQJ A;  4LRC A;  3LXQ A;  1ANI A;  1KH7 A;  4LRD A;  1FSU A;  4CYS A;  3A52 A;  3SZZ A;  1ED8 A;  2W5V A;  3MK1 A;  1K7H A;  1ELY A;  5L0B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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