2IURD

Crystal structure of n-quinol form of aromatic amine dehydrogenase (aadh) from alcaligenes faecalis, form a cocrystal
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
Knots found
sequence length
110
structure length
109
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords AROMATIC AMINE DEHYDROGENASE ALPHA SUBUNIT
publication title Atomic Level Insight Into the Oxidative Half-Reaction of Aromatic Amine Dehydrogenase.
pubmed doi rcsb
total genus 28
structure length 109
sequence length 110
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2006-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2iurD00
4L3HC 2HJ4D 2AH1D 2OIZD 4K3IC 3RMZC 4FA1C 2AGWD 2HJBD 3SXTC 4FANC 2Q7QD 2IAAB 4FA4C 3SWSC 1MAFL 3RN0C 2J57K 3SJLC 2I0RD 2AH0D 1MG2B 2MTAL 3L4OC 2OK6D 4O1QC 2AGXD 3C75L 3RLMC 2OK4D 4Y5RC 3ORVC 1MG3B 4FA9C 2HXCD 2MADL 3PXSC 2BBKL 4FAVC 4L3GC 3SVWC 2IUQD 2GC7B 2AGLD 2J56L 2H47B 2H3XB 3L4MC 3SLEC 4FB1C 2HKMD 2HKRD 2AGZD 1MDAL 1MAEL 2OJYD 2IURD 3PXWC 3RN1C 2AGYD 2IUPD 3PXTC 4FA5C 4L1QC 2GC4B 2J55L 2I0SD 2I0TD 2IUVD
chains in the Genus database with same CATH superfamily
4L3HC 2HJ4D 2AH1D 2OIZD 4K3IC 3RMZC 4FA1C 2AGWD 2HJBD 3SXTC 4FANC 2Q7QD 2IAAB 4FA4C 3SWSC 1MAFL 3RN0C 2J57K 3SJLC 2I0RD 2AH0D 1MG2B 2MTAL 3L4OC 2OK6D 4O1QC 2AGXD 3C75L 3RLMC 2OK4D 4Y5RC 3ORVC 1MG3B 4FA9C 2HXCD 2MADL 3PXSC 2BBKL 4FAVC 4L3GC 3SVWC 2IUQD 2GC7B 2AGLD 2J56L 2H47B 2H3XB 3L4MC 3SLEC 4FB1C 2HKMD 2HKRD 2AGZD 1MDAL 1MAEL 2OJYD 2IURD 3PXWC 3RN1C 2AGYD 2IUPD 3PXTC 4FA5C 4L1QC 2GC4B 2J55L 2I0SD 2I0TD 2IUVD
chains in the Genus database with same CATH topology
4L3HC 2HJ4D 2AH1D 2OIZD 4K3IC 3RMZC 4FA1C 2AGWD 2HJBD 3SXTC 4FANC 2Q7QD 2IAAB 4FA4C 3SWSC 1MAFL 3RN0C 2J57K 3SJLC 2I0RD 2AH0D 1MG2B 2MTAL 3L4OC 2OK6D 4O1QC 2AGXD 3C75L 3RLMC 2OK4D 4Y5RC 3ORVC 1MG3B 4FA9C 2HXCD 2MADL 3PXSC 2BBKL 4FAVC 4L3GC 3SVWC 2IUQD 2GC7B 2AGLD 2J56L 2H47B 2H3XB 3L4MC 3SLEC 4FB1C 2HKMD 2HKRD 2AGZD 1MDAL 1MAEL 2OJYD 2IURD 3PXWC 3RN1C 2AGYD 2IUPD 3PXTC 4FA5C 4L1QC 2GC4B 2J55L 2I0SD 2I0TD 2IUVD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4L3H C;  2HJ4 D;  2AH1 D;  2OIZ D;  4K3I C;  3RMZ C;  4FA1 C;  2AGW D;  2HJB D;  3SXT C;  4FAN C;  2Q7Q D;  2IAA B;  4FA4 C;  3SWS C;  1MAF L;  3RN0 C;  2J57 K;  3SJL C;  2I0R D;  2AH0 D;  1MG2 B;  2MTA L;  3L4O C;  2OK6 D;  4O1Q C;  2AGX D;  3C75 L;  3RLM C;  2OK4 D;  4Y5R C;  3ORV C;  1MG3 B;  4FA9 C;  2HXC D;  2MAD L;  3PXS C;  2BBK L;  4FAV C;  4L3G C;  3SVW C;  2IUQ D;  2GC7 B;  2AGL D;  2J56 L;  2H47 B;  2H3X B;  3L4M C;  3SLE C;  4FB1 C;  2HKM D;  2HKR D;  2AGZ D;  1MDA L;  1MAE L;  2OJY D;  2IUR D;  3PXW C;  3RN1 C;  2AGY D;  2IUP D;  3PXT C;  4FA5 C;  4L1Q C;  2GC4 B;  2J55 L;  2I0S D;  2I0T D;  2IUV D; 
#chains in the Genus database with same CATH topology
 4L3H C;  2HJ4 D;  2AH1 D;  2OIZ D;  4K3I C;  3RMZ C;  4FA1 C;  2AGW D;  2HJB D;  3SXT C;  4FAN C;  2Q7Q D;  2IAA B;  4FA4 C;  3SWS C;  1MAF L;  3RN0 C;  2J57 K;  3SJL C;  2I0R D;  2AH0 D;  1MG2 B;  2MTA L;  3L4O C;  2OK6 D;  4O1Q C;  2AGX D;  3C75 L;  3RLM C;  2OK4 D;  4Y5R C;  3ORV C;  1MG3 B;  4FA9 C;  2HXC D;  2MAD L;  3PXS C;  2BBK L;  4FAV C;  4L3G C;  3SVW C;  2IUQ D;  2GC7 B;  2AGL D;  2J56 L;  2H47 B;  2H3X B;  3L4M C;  3SLE C;  4FB1 C;  2HKM D;  2HKR D;  2AGZ D;  1MDA L;  1MAE L;  2OJY D;  2IUR D;  3PXW C;  3RN1 C;  2AGY D;  2IUP D;  3PXT C;  4FA5 C;  4L1Q C;  2GC4 B;  2J55 L;  2I0S D;  2I0T D;  2IUV D; 
#chains in the Genus database with same CATH homology
 4L3H C;  2HJ4 D;  2AH1 D;  2OIZ D;  4K3I C;  3RMZ C;  4FA1 C;  2AGW D;  2HJB D;  3SXT C;  4FAN C;  2Q7Q D;  2IAA B;  4FA4 C;  3SWS C;  1MAF L;  3RN0 C;  2J57 K;  3SJL C;  2I0R D;  2AH0 D;  1MG2 B;  2MTA L;  3L4O C;  2OK6 D;  4O1Q C;  2AGX D;  3C75 L;  3RLM C;  2OK4 D;  4Y5R C;  3ORV C;  1MG3 B;  4FA9 C;  2HXC D;  2MAD L;  3PXS C;  2BBK L;  4FAV C;  4L3G C;  3SVW C;  2IUQ D;  2GC7 B;  2AGL D;  2J56 L;  2H47 B;  2H3X B;  3L4M C;  3SLE C;  4FB1 C;  2HKM D;  2HKR D;  2AGZ D;  1MDA L;  1MAE L;  2OJY D;  2IUR D;  3PXW C;  3RN1 C;  2AGY D;  2IUP D;  3PXT C;  4FA5 C;  4L1Q C;  2GC4 B;  2J55 L;  2I0S D;  2I0T D;  2IUV D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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