2J55L

X-ray reduced paraccocus denitrificans methylamine dehydrogenase o- quinone in complex with amicyanin.
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
Knots found
sequence length
125
structure length
124
Chain Sequence
TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords AMICYANIN
publication title Tracking X-Ray-Derived Redox Changes in Crystals of a Methylamine Dehydrogenase/Amicyanin Complex Using Single-Crystal Uv/Vis Microspectrophotometry.
pubmed doi rcsb
total genus 31
structure length 124
sequence length 125
chains with identical sequence M
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 2006-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2j55L00
2H3XB 4O1QC 2HJBD 4FA5C 2IUVD 3SVWC 2HXCD 2AH1D 2AH0D 2I0RD 3SLEC 2AGYD 2HKRD 3PXWC 2J57K 4K3IC 3SJLC 4FANC 1MAFL 2I0SD 3PXTC 3RLMC 3RN0C 3RN1C 2BBKL 3RMZC 4FA4C 2IUPD 2HKMD 2MADL 1MG3B 2AGXD 2IURD 3SWSC 2GC4B 4FA9C 2HJ4D 3L4OC 2OK4D 2AGLD 4L3HC 2AGZD 2I0TD 4FA1C 1MDAL 4L1QC 3C75L 2IUQD 2OIZD 4L3GC 2OK6D 2J56L 1MAEL 2OJYD 2GC7B 2J55L 3PXSC 3ORVC 4FB1C 2IAAB 2AGWD 2H47B 1MG2B 2MTAL 2Q7QD 3L4MC 4Y5RC 4FAVC 3SXTC
chains in the Genus database with same CATH superfamily
2H3XB 4O1QC 2HJBD 4FA5C 2IUVD 3SVWC 2HXCD 2AH1D 2AH0D 2I0RD 3SLEC 2AGYD 2HKRD 3PXWC 2J57K 4K3IC 3SJLC 4FANC 1MAFL 2I0SD 3PXTC 3RLMC 3RN0C 3RN1C 2BBKL 3RMZC 4FA4C 2IUPD 2HKMD 2MADL 1MG3B 2AGXD 2IURD 3SWSC 2GC4B 4FA9C 2HJ4D 3L4OC 2OK4D 2AGLD 4L3HC 2AGZD 2I0TD 4FA1C 1MDAL 4L1QC 3C75L 2IUQD 2OIZD 4L3GC 2OK6D 2J56L 1MAEL 2OJYD 2GC7B 2J55L 3PXSC 3ORVC 4FB1C 2IAAB 2AGWD 2H47B 1MG2B 2MTAL 2Q7QD 3L4MC 4Y5RC 4FAVC 3SXTC
chains in the Genus database with same CATH topology
2H3XB 4O1QC 2HJBD 4FA5C 2IUVD 3SVWC 2HXCD 2AH1D 2AH0D 2I0RD 3SLEC 2AGYD 2HKRD 3PXWC 2J57K 4K3IC 3SJLC 4FANC 1MAFL 2I0SD 3PXTC 3RLMC 3RN0C 3RN1C 2BBKL 3RMZC 4FA4C 2IUPD 2HKMD 2MADL 1MG3B 2AGXD 2IURD 3SWSC 2GC4B 4FA9C 2HJ4D 3L4OC 2OK4D 2AGLD 4L3HC 2AGZD 2I0TD 4FA1C 1MDAL 4L1QC 3C75L 2IUQD 2OIZD 4L3GC 2OK6D 2J56L 1MAEL 2OJYD 2GC7B 2J55L 3PXSC 3ORVC 4FB1C 2IAAB 2AGWD 2H47B 1MG2B 2MTAL 2Q7QD 3L4MC 4Y5RC 4FAVC 3SXTC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H3X B;  4O1Q C;  2HJB D;  4FA5 C;  2IUV D;  3SVW C;  2HXC D;  2AH1 D;  2AH0 D;  2I0R D;  3SLE C;  2AGY D;  2HKR D;  3PXW C;  2J57 K;  4K3I C;  3SJL C;  4FAN C;  1MAF L;  2I0S D;  3PXT C;  3RLM C;  3RN0 C;  3RN1 C;  2BBK L;  3RMZ C;  4FA4 C;  2IUP D;  2HKM D;  2MAD L;  1MG3 B;  2AGX D;  2IUR D;  3SWS C;  2GC4 B;  4FA9 C;  2HJ4 D;  3L4O C;  2OK4 D;  2AGL D;  4L3H C;  2AGZ D;  2I0T D;  4FA1 C;  1MDA L;  4L1Q C;  3C75 L;  2IUQ D;  2OIZ D;  4L3G C;  2OK6 D;  2J56 L;  1MAE L;  2OJY D;  2GC7 B;  2J55 L;  3PXS C;  3ORV C;  4FB1 C;  2IAA B;  2AGW D;  2H47 B;  1MG2 B;  2MTA L;  2Q7Q D;  3L4M C;  4Y5R C;  4FAV C;  3SXT C; 
#chains in the Genus database with same CATH topology
 2H3X B;  4O1Q C;  2HJB D;  4FA5 C;  2IUV D;  3SVW C;  2HXC D;  2AH1 D;  2AH0 D;  2I0R D;  3SLE C;  2AGY D;  2HKR D;  3PXW C;  2J57 K;  4K3I C;  3SJL C;  4FAN C;  1MAF L;  2I0S D;  3PXT C;  3RLM C;  3RN0 C;  3RN1 C;  2BBK L;  3RMZ C;  4FA4 C;  2IUP D;  2HKM D;  2MAD L;  1MG3 B;  2AGX D;  2IUR D;  3SWS C;  2GC4 B;  4FA9 C;  2HJ4 D;  3L4O C;  2OK4 D;  2AGL D;  4L3H C;  2AGZ D;  2I0T D;  4FA1 C;  1MDA L;  4L1Q C;  3C75 L;  2IUQ D;  2OIZ D;  4L3G C;  2OK6 D;  2J56 L;  1MAE L;  2OJY D;  2GC7 B;  2J55 L;  3PXS C;  3ORV C;  4FB1 C;  2IAA B;  2AGW D;  2H47 B;  1MG2 B;  2MTA L;  2Q7Q D;  3L4M C;  4Y5R C;  4FAV C;  3SXT C; 
#chains in the Genus database with same CATH homology
 2H3X B;  4O1Q C;  2HJB D;  4FA5 C;  2IUV D;  3SVW C;  2HXC D;  2AH1 D;  2AH0 D;  2I0R D;  3SLE C;  2AGY D;  2HKR D;  3PXW C;  2J57 K;  4K3I C;  3SJL C;  4FAN C;  1MAF L;  2I0S D;  3PXT C;  3RLM C;  3RN0 C;  3RN1 C;  2BBK L;  3RMZ C;  4FA4 C;  2IUP D;  2HKM D;  2MAD L;  1MG3 B;  2AGX D;  2IUR D;  3SWS C;  2GC4 B;  4FA9 C;  2HJ4 D;  3L4O C;  2OK4 D;  2AGL D;  4L3H C;  2AGZ D;  2I0T D;  4FA1 C;  1MDA L;  4L1Q C;  3C75 L;  2IUQ D;  2OIZ D;  4L3G C;  2OK6 D;  2J56 L;  1MAE L;  2OJY D;  2GC7 B;  2J55 L;  3PXS C;  3ORV C;  4FB1 C;  2IAA B;  2AGW D;  2H47 B;  1MG2 B;  2MTA L;  2Q7Q D;  3L4M C;  4Y5R C;  4FAV C;  3SXT C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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