2J57K

X-ray reduced paraccocus denitrificans methylamine dehydrogenase n- quinol in complex with amicyanin.
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
Knots found
sequence length
125
structure length
124
Chain Sequence
TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords AMICYANIN
publication title Tracking X-Ray-Derived Redox Changes in Crystals of a Methylamine Dehydrogenase/Amicyanin Complex Using Single-Crystal Uv/Vis Microspectrophotometry.
pubmed doi rcsb
total genus 32
structure length 124
sequence length 125
chains with identical sequence L, M, N
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 2006-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2j57K00
2J55L 2MADL 2AGZD 2AGYD 4FA4C 2H47B 3PXTC 2Q7QD 4FA5C 2I0TD 2OIZD 2AH1D 2IUVD 3RLMC 1MG3B 4FB1C 4Y5RC 3SVWC 2OK6D 3L4OC 1MAFL 4FA1C 2HKRD 2IUPD 2AGLD 3RN1C 2GC4B 1MAEL 4L3GC 3RMZC 2OK4D 4FA9C 4FAVC 4L1QC 4K3IC 2HKMD 4O1QC 4L3HC 2MTAL 3PXSC 2H3XB 2BBKL 3SXTC 2AGXD 4FANC 2IURD 1MDAL 1MG2B 2J57K 2OJYD 2AH0D 2IUQD 3C75L 3PXWC 3SLEC 2I0RD 2J56L 2IAAB 2GC7B 2HJBD 3L4MC 2I0SD 3SJLC 2HJ4D 2AGWD 3SWSC 3RN0C 3ORVC 2HXCD
chains in the Genus database with same CATH superfamily
2J55L 2MADL 2AGZD 2AGYD 4FA4C 2H47B 3PXTC 2Q7QD 4FA5C 2I0TD 2OIZD 2AH1D 2IUVD 3RLMC 1MG3B 4FB1C 4Y5RC 3SVWC 2OK6D 3L4OC 1MAFL 4FA1C 2HKRD 2IUPD 2AGLD 3RN1C 2GC4B 1MAEL 4L3GC 3RMZC 2OK4D 4FA9C 4FAVC 4L1QC 4K3IC 2HKMD 4O1QC 4L3HC 2MTAL 3PXSC 2H3XB 2BBKL 3SXTC 2AGXD 4FANC 2IURD 1MDAL 1MG2B 2J57K 2OJYD 2AH0D 2IUQD 3C75L 3PXWC 3SLEC 2I0RD 2J56L 2IAAB 2GC7B 2HJBD 3L4MC 2I0SD 3SJLC 2HJ4D 2AGWD 3SWSC 3RN0C 3ORVC 2HXCD
chains in the Genus database with same CATH topology
2J55L 2MADL 2AGZD 2AGYD 4FA4C 2H47B 3PXTC 2Q7QD 4FA5C 2I0TD 2OIZD 2AH1D 2IUVD 3RLMC 1MG3B 4FB1C 4Y5RC 3SVWC 2OK6D 3L4OC 1MAFL 4FA1C 2HKRD 2IUPD 2AGLD 3RN1C 2GC4B 1MAEL 4L3GC 3RMZC 2OK4D 4FA9C 4FAVC 4L1QC 4K3IC 2HKMD 4O1QC 4L3HC 2MTAL 3PXSC 2H3XB 2BBKL 3SXTC 2AGXD 4FANC 2IURD 1MDAL 1MG2B 2J57K 2OJYD 2AH0D 2IUQD 3C75L 3PXWC 3SLEC 2I0RD 2J56L 2IAAB 2GC7B 2HJBD 3L4MC 2I0SD 3SJLC 2HJ4D 2AGWD 3SWSC 3RN0C 3ORVC 2HXCD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J55 L;  2MAD L;  2AGZ D;  2AGY D;  4FA4 C;  2H47 B;  3PXT C;  2Q7Q D;  4FA5 C;  2I0T D;  2OIZ D;  2AH1 D;  2IUV D;  3RLM C;  1MG3 B;  4FB1 C;  4Y5R C;  3SVW C;  2OK6 D;  3L4O C;  1MAF L;  4FA1 C;  2HKR D;  2IUP D;  2AGL D;  3RN1 C;  2GC4 B;  1MAE L;  4L3G C;  3RMZ C;  2OK4 D;  4FA9 C;  4FAV C;  4L1Q C;  4K3I C;  2HKM D;  4O1Q C;  4L3H C;  2MTA L;  3PXS C;  2H3X B;  2BBK L;  3SXT C;  2AGX D;  4FAN C;  2IUR D;  1MDA L;  1MG2 B;  2J57 K;  2OJY D;  2AH0 D;  2IUQ D;  3C75 L;  3PXW C;  3SLE C;  2I0R D;  2J56 L;  2IAA B;  2GC7 B;  2HJB D;  3L4M C;  2I0S D;  3SJL C;  2HJ4 D;  2AGW D;  3SWS C;  3RN0 C;  3ORV C;  2HXC D; 
#chains in the Genus database with same CATH topology
 2J55 L;  2MAD L;  2AGZ D;  2AGY D;  4FA4 C;  2H47 B;  3PXT C;  2Q7Q D;  4FA5 C;  2I0T D;  2OIZ D;  2AH1 D;  2IUV D;  3RLM C;  1MG3 B;  4FB1 C;  4Y5R C;  3SVW C;  2OK6 D;  3L4O C;  1MAF L;  4FA1 C;  2HKR D;  2IUP D;  2AGL D;  3RN1 C;  2GC4 B;  1MAE L;  4L3G C;  3RMZ C;  2OK4 D;  4FA9 C;  4FAV C;  4L1Q C;  4K3I C;  2HKM D;  4O1Q C;  4L3H C;  2MTA L;  3PXS C;  2H3X B;  2BBK L;  3SXT C;  2AGX D;  4FAN C;  2IUR D;  1MDA L;  1MG2 B;  2J57 K;  2OJY D;  2AH0 D;  2IUQ D;  3C75 L;  3PXW C;  3SLE C;  2I0R D;  2J56 L;  2IAA B;  2GC7 B;  2HJB D;  3L4M C;  2I0S D;  3SJL C;  2HJ4 D;  2AGW D;  3SWS C;  3RN0 C;  3ORV C;  2HXC D; 
#chains in the Genus database with same CATH homology
 2J55 L;  2MAD L;  2AGZ D;  2AGY D;  4FA4 C;  2H47 B;  3PXT C;  2Q7Q D;  4FA5 C;  2I0T D;  2OIZ D;  2AH1 D;  2IUV D;  3RLM C;  1MG3 B;  4FB1 C;  4Y5R C;  3SVW C;  2OK6 D;  3L4O C;  1MAF L;  4FA1 C;  2HKR D;  2IUP D;  2AGL D;  3RN1 C;  2GC4 B;  1MAE L;  4L3G C;  3RMZ C;  2OK4 D;  4FA9 C;  4FAV C;  4L1Q C;  4K3I C;  2HKM D;  4O1Q C;  4L3H C;  2MTA L;  3PXS C;  2H3X B;  2BBK L;  3SXT C;  2AGX D;  4FAN C;  2IUR D;  1MDA L;  1MG2 B;  2J57 K;  2OJY D;  2AH0 D;  2IUQ D;  3C75 L;  3PXW C;  3SLE C;  2I0R D;  2J56 L;  2IAA B;  2GC7 B;  2HJB D;  3L4M C;  2I0S D;  3SJL C;  2HJ4 D;  2AGW D;  3SWS C;  3RN0 C;  3ORV C;  2HXC D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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