2JRBA

C-terminal domain of orf1p from mouse line-1
Total Genus 13
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
65
structure length
65
Chain Sequence
FSPETMKARRAWTDVIQTLREHKCQPRLLYPAKLSITIDGETKVFHDKTKFTQYLSTNPALQRII
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Rna binding protein
molecule keywords ORF 1 protein
publication title Identification and solution structure of a highly conserved C-terminal domain within ORF1p required for retrotransposition of long interspersed nuclear element-1.
pubmed doi rcsb
source organism Mus musculus
total genus 13
structure length 65
sequence length 65
ec nomenclature
pdb deposition date 2007-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17490 Tnp_22_dsRBD L1 transposable element dsRBD-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.250.20 Alpha Beta 2-Layer Sandwich Rec A Protein; domain 2 Rec A Protein; domain 2 2jrbA00
2JRBA 2YKOA 3SOOA 2LDYA 2YKPA 2YKQA
chains in the Genus database with same CATH superfamily
2ODWA 1XMSA 4TWZA 4PPGA 1MO5A 2ZRKA 4PPFA 2JRBA 1UBGA 2ZRIA 2ZRNA 4PPQA 2ZRPA 4PSAA 1UBFA 5JRJA 1MO3A 2OESA 4PSKA 1UBEA 2YKPA 1XMVA 2ZRMA 4PQYA 1U99A 2ZRJA 1G18A 2LDYA 2ZRGA 4PO8A 2ZRBA 4PO9A 2ZRFA 3HR8A 2ZRHA 2REBA 2ZRLA 2ZRAA 2OEPA 1G19A 1U94A 2OE2A 4PTLA 2YKOA 1MO6A 2ZRCA 1MO4A 2G88A 4PQRA 4PQFA 4OQFA 3SOOA 2ZREA 2ZR7A 2YKQA 1AA3A 4PR0A 1UBCA 2ZR9A 4PPNA 2OFOA 4PO1A 4PSVA 1U98A 2ODNA 2ZR0A 2ZROA 2ZRDA 1XP8A 4POAA
chains in the Genus database with same CATH topology
2JRBA 2YKOA 3SOOA 2LDYA 2YKPA 2YKQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JRB A;  2YKO A;  3SOO A;  2LDY A;  2YKP A;  2YKQ A; 
#chains in the Genus database with same CATH topology
 2ODW A;  1XMS A;  4TWZ A;  4PPG A;  1MO5 A;  2ZRK A;  4PPF A;  2JRB A;  1UBG A;  2ZRI A;  2ZRN A;  4PPQ A;  2ZRP A;  4PSA A;  1UBF A;  5JRJ A;  1MO3 A;  2OES A;  4PSK A;  1UBE A;  2YKP A;  1XMV A;  2ZRM A;  4PQY A;  1U99 A;  2ZRJ A;  1G18 A;  2LDY A;  2ZRG A;  4PO8 A;  2ZRB A;  4PO9 A;  2ZRF A;  3HR8 A;  2ZRH A;  2REB A;  2ZRL A;  2ZRA A;  2OEP A;  1G19 A;  1U94 A;  2OE2 A;  4PTL A;  2YKO A;  1MO6 A;  2ZRC A;  1MO4 A;  2G88 A;  4PQR A;  4PQF A;  4OQF A;  3SOO A;  2ZRE A;  2ZR7 A;  2YKQ A;  1AA3 A;  4PR0 A;  1UBC A;  2ZR9 A;  4PPN A;  2OFO A;  4PO1 A;  4PSV A;  1U98 A;  2ODN A;  2ZR0 A;  2ZRO A;  2ZRD A;  1XP8 A;  4POA A; 
#chains in the Genus database with same CATH homology
 2JRB A;  2YKO A;  3SOO A;  2LDY A;  2YKP A;  2YKQ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...