2JUNA

Structure of the mid1 tandem b-boxes reveals an interaction reminiscent of intermolecular ring heterodimers
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
101
structure length
101
Chain Sequence
AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
molecule keywords Midline-1
publication title Structure of the MID1 Tandem B-Boxes Reveals an Interaction Reminiscent of Intermolecular Ring Heterodimers
pubmed doi rcsb
source organism Homo sapiens
total genus 12
structure length 101
sequence length 101
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2007-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00643 zf-B_box B-box zinc finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.200 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 2junA00
5K3QA 2YVRA 2CSVA 2DJAA 2JUNA 2D8UA 3DDTA 2EGMA 3Q1DA
chains in the Genus database with same CATH superfamily
4PTBA 1VD4A 2DX8A 3RTRB 1LDKC 3T7LA 2KE1A 2MUMA 2Y43A 2Y1MA 4A4CA 4X3GA 2CSVA 4OGCA 2IQJA 2XOYA 2G45A 4S3OB 4R7EA 2KWJA 4YADA 2ECWA 5B79A 1WGMA 5H1UA 5D1MB 2D8UA 5H9MA 2ECTA 1MBMA 4H9DA 3HCTA 4W4UA 2BAYA 5B75A 3ZVZB 4BHWA 2OXQC 2F42A 3E2DA 3HCSA 3V43A 5TDWA 3FJUB 4CCGX 1WEPA 2MT5A 4WA6A 1BORA 2CSYA 3H7HA 2D8SA 3M63A 2RSDA 2IDAA 5SVIA 4LADB 1G25A 1VFYA 5B78A 4N3WA 4GNFA 3ASLA 3N9PA 2L0BA 1JOCA 2LGLA 3N9OA 4GB0A 3HCUA 5TDRA 3C5KA 2QIZA 3U5PA 3SUBA 3PUQA 1K2FA 3KNVA 2CKLB 2H0DB 5B76A 2KKYA 5LKZA 5G05B 3U5MA 2MNYA 1N87A 2KR4A 5SVIB 3O70A 1WEEA 2M13A 4YAXA 4WZ2A 4IC3A 2YHNA 3ZVYA 5LCWB 2KIZA 3MDBC 3LRQA 2YT5A 4NN2A 1RMDA 3SOXA 2CT2A 1HYJA 3O34A 3T6RA 2CONA 3FM8C 5KH3A 5TBNA 3RPGB 2YQMA 1Z2QA 4OGEA 5KH7A 1WEMA 4ZDTA 2VP7A 5C13A 2JM3A 3LQHA 3I2DA 2K17A 2LAUA 2VPBA 1WIMA 3U5NA 2I50A 2LXPC 4GNDA 4LJNA 2MD7B 2YQLA 3O7AA 2YHOA 2HDPA 2JMJA 4AVXA 2YU4A 3O36A 4C9ZA 2DJAA 2KFTA 2NAAA 3VK6A 4F1PA 2CRRA 2G6QA 3FL2A 4IC2A 4YC9A 1HYIA 5LKTA 4P5OB 4PPEA 3DWDA 2M85A 4O64A 4GNGA 2FUUA 3QZVA 5JG6A 2M3HA 2XOZA 3NG2A 3L1ZB 4YATA 2CKLA 2H0DA 4S3OC 2XEUA 2G43A 5DINA 1ZBDB 5TRBA 4YBMA 3LDYA 1WEUA 3ZYQA 1JM7B 4QQ4A 4MSXA 2FFWA 2M1RA 2VNFA 4V3KC 2EGPA 1DCQA 4BBQA 4F52B 1WENA 5FB1A 5G0FA 4A49A 2ECGA 5B8DA 4I7BA 4AYCB 5SVYA 4LK9A 2YW8A 1WEWA 1MM3A 1WEOA 4FO9A 2VJFB 2L80A 4N4FA 1VYXA 2DSMA 4Z0OA 2PUYA 4WZ3B 5TABA 2VPGA 2LQ6A 2LGKA 5AIUA 2JUNA 2LRIC 3O33A 2YURA 2EGMA 3O47A 2KREA 4UI9B 2KYUA 3O35A 3GV4A 2FUIA 2HYED 3ZNIA 2UZGA 3SOWA 1WEQA 2ECIA 4L58A 2L43A 2LN0A 5FEYA 4O62A 5FB0A 3L11A 3ZPV1 5EYAF 4YABA 3M7KA 4R8PK 5KH9A 1MM2A 2RR4A 2XOCA 1FP0A 3MHSA 2VPEA 1DVPA 2JMDA 1WESA 1X4UA 4UP5A 2LGGA 5I3LA 2RI7A 1E4UA 4TKPB 2B0OE 3LQJA 2L5UA 1V87A 4FK5A 2EXUA 1WFKA 1XWHA 2MIQA 2ECVA 2YYRA 2JRJA 3PHDA 3KQIA 1FBVA 3LVQE 4I7DA 5D1LB 2KGGA 2XP0A 3FANA 3SHBA 3O37A 3GL6A 2VPDA 2PNXA 2LV9A 1JM7A 2JMIA 4B7YC 2ZETC 2Y1NA 2YVRA 2LXHC 2C2LA 3DDTA 3T9KA 1X4IA 3LJUX 2CRWA 3N9QA 3FAOA 4AYCA 3KDEC 3ZTGA 4FJCA 4R2YA 4WZ0A 3JUEA 4Z0RA 2VJFA 2VJEB 4LLBA 4A4BA 2E6RA 2MNZA 1T1HA 1X4JA 2K16A 4MVTA 4YBSA 2E6SA 5J3XA 4ZUXU 4I7CA 5LKUA 1CHCA 4FIPA 5FERA 3EB6A 2M6MA 2MA6A 3Q1DA 2C2VS 3N9LA 2L75A 3DQVR 3EB5A 3SOUA 2EODA 4LKAA 3ZPVE 3KV6A 2F6JA 4AUQB 2KWKA 5H1VA 2KWOA 4XI1A 2YREA 1LDJB 4QF2A 4UP0A 3M99A 2MKEA 4A0CD 1WEVA 4Q6FA 2XB1A 5D1KB 2KU3A 2P57A 1WE9A 2L7PA 5SVXA 3MHHA 2ECJA 5H1TA 4V3LC 3HTKC 3N9MA 2AN6A 5LKXA 2MA5A 2QICA 1Z6UA 4GNEA 2ECNA 4CA1A 3FEHA 5AITA 2KWNA 2OWAA 3LVRE 4ZQLA 3N9NA 1U6GB 2KGIA 2LDRA 1Z60A 3L1XA 2F6NA 2YUCA 1IYMA 2QJ0A 2FD4A 5C11A 4AP4A 4B86C 2CSZA 2KKXA 4L7XA 2K4DA 2VJEA 3M62A 2FSAA 3PLWA 3DPLR 4YBTA 3C6WA 2LGVA 3PURA 3U5OA 1F62A 3LQIA 2MD8C 5K3QA 3KV5A 5G04B 5DKAA 2EA6A 2YSJA 5B77A 2E61A 3RPGC 2K1JA 4QF3A 3IHPA 1WILA 2YSMA
chains in the Genus database with same CATH topology
3LJUX 3PLWA 2CRWA 4Z0OA 2KKYA 2D8UA 2JM3A 2MKEA 4QQ4A 5SVIA 3Q1DA 2LAUA 3DWDA 3FEHA 2FFWA 3M7KA 3KDEC 2XOCA 2RR4A 3JUEA 3LVQE 4H9DA 4Z0RA 2JUNA 2OWAA 3LVRE 4F1PA 2P57A 2XP0A 3LDYA 2L7PA 2EGMA 3O47A 1DCQA 2XOZA 5SVXA 5K3QA 2CONA 2B0OE 2CSVA 3E2DA 4OGCA 2IQJA 3FM8C 2XOYA 5SVYA 5SVIB 2FD4A 2E61A 3FJUB 2M13A 3H7HA 2YREA 2YVRA 2DJAA 2KKXA 2EXUA 3DDTA 3MDBC 4OGEA 2CRRA 3T9KA 3SUBA 4O62A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5K3Q A;  2YVR A;  2CSV A;  2DJA A;  2JUN A;  2D8U A;  3DDT A;  2EGM A;  3Q1D A; 
#chains in the Genus database with same CATH topology
 4PTB A;  1VD4 A;  2DX8 A;  3RTR B;  1LDK C;  3T7L A;  2KE1 A;  2MUM A;  2Y43 A;  2Y1M A;  4A4C A;  4X3G A;  2CSV A;  4OGC A;  2IQJ A;  2XOY A;  2G45 A;  4S3O B;  4R7E A;  2KWJ A;  4YAD A;  2ECW A;  5B79 A;  1WGM A;  5H1U A;  5D1M B;  2D8U A;  5H9M A;  2ECT A;  1MBM A;  4H9D A;  3HCT A;  4W4U A;  2BAY A;  5B75 A;  3ZVZ B;  4BHW A;  2OXQ C;  2F42 A;  3E2D A;  3HCS A;  3V43 A;  5TDW A;  3FJU B;  4CCG X;  1WEP A;  2MT5 A;  4WA6 A;  1BOR A;  2CSY A;  3H7H A;  2D8S A;  3M63 A;  2RSD A;  2IDA A;  5SVI A;  4LAD B;  1G25 A;  1VFY A;  5B78 A;  4N3W A;  4GNF A;  3ASL A;  3N9P A;  2L0B A;  1JOC A;  2LGL A;  3N9O A;  4GB0 A;  3HCU A;  5TDR A;  3C5K A;  2QIZ A;  3U5P A;  3SUB A;  3PUQ A;  1K2F A;  3KNV A;  2CKL B;  2H0D B;  5B76 A;  2KKY A;  5LKZ A;  5G05 B;  3U5M A;  2MNY A;  1N87 A;  2KR4 A;  5SVI B;  3O70 A;  1WEE A;  2M13 A;  4YAX A;  4WZ2 A;  4IC3 A;  2YHN A;  3ZVY A;  5LCW B;  2KIZ A;  3MDB C;  3LRQ A;  2YT5 A;  4NN2 A;  1RMD A;  3SOX A;  2CT2 A;  1HYJ A;  3O34 A;  3T6R A;  2CON A;  3FM8 C;  5KH3 A;  5TBN A;  3RPG B;  2YQM A;  1Z2Q A;  4OGE A;  5KH7 A;  1WEM A;  4ZDT A;  2VP7 A;  5C13 A;  2JM3 A;  3LQH A;  3I2D A;  2K17 A;  2LAU A;  2VPB A;  1WIM A;  3U5N A;  2I50 A;  2LXP C;  4GND A;  4LJN A;  2MD7 B;  2YQL A;  3O7A A;  2YHO A;  2HDP A;  2JMJ A;  4AVX A;  2YU4 A;  3O36 A;  4C9Z A;  2DJA A;  2KFT A;  2NAA A;  3VK6 A;  4F1P A;  2CRR A;  2G6Q A;  3FL2 A;  4IC2 A;  4YC9 A;  1HYI A;  5LKT A;  4P5O B;  4PPE A;  3DWD A;  2M85 A;  4O64 A;  4GNG A;  2FUU A;  3QZV A;  5JG6 A;  2M3H A;  2XOZ A;  3NG2 A;  3L1Z B;  4YAT A;  2CKL A;  2H0D A;  4S3O C;  2XEU A;  2G43 A;  5DIN A;  1ZBD B;  5TRB A;  4YBM A;  3LDY A;  1WEU A;  3ZYQ A;  1JM7 B;  4QQ4 A;  4MSX A;  2FFW A;  2M1R A;  2VNF A;  4V3K C;  2EGP A;  1DCQ A;  4BBQ A;  4F52 B;  1WEN A;  5FB1 A;  5G0F A;  4A49 A;  2ECG A;  5B8D A;  4I7B A;  4AYC B;  5SVY A;  4LK9 A;  2YW8 A;  1WEW A;  1MM3 A;  1WEO A;  4FO9 A;  2VJF B;  2L80 A;  4N4F A;  1VYX A;  2DSM A;  4Z0O A;  2PUY A;  4WZ3 B;  5TAB A;  2VPG A;  2LQ6 A;  2LGK A;  5AIU A;  2JUN A;  2LRI C;  3O33 A;  2YUR A;  2EGM A;  3O47 A;  2KRE A;  4UI9 B;  2KYU A;  3O35 A;  3GV4 A;  2FUI A;  2HYE D;  3ZNI A;  2UZG A;  3SOW A;  1WEQ A;  2ECI A;  4L58 A;  2L43 A;  2LN0 A;  5FEY A;  4O62 A;  5FB0 A;  3L11 A;  3ZPV 1;  5EYA F;  4YAB A;  3M7K A;  4R8P K;  5KH9 A;  1MM2 A;  2RR4 A;  2XOC A;  1FP0 A;  3MHS A;  2VPE A;  1DVP A;  2JMD A;  1WES A;  1X4U A;  4UP5 A;  2LGG A;  5I3L A;  2RI7 A;  1E4U A;  4TKP B;  2B0O E;  3LQJ A;  2L5U A;  1V87 A;  4FK5 A;  2EXU A;  1WFK A;  1XWH A;  2MIQ A;  2ECV A;  2YYR A;  2JRJ A;  3PHD A;  3KQI A;  1FBV A;  3LVQ E;  4I7D A;  5D1L B;  2KGG A;  2XP0 A;  3FAN A;  3SHB A;  3O37 A;  3GL6 A;  2VPD A;  2PNX A;  2LV9 A;  1JM7 A;  2JMI A;  4B7Y C;  2ZET C;  2Y1N A;  2YVR A;  2LXH C;  2C2L A;  3DDT A;  3T9K A;  1X4I A;  3LJU X;  2CRW A;  3N9Q A;  3FAO A;  4AYC A;  3KDE C;  3ZTG A;  4FJC A;  4R2Y A;  4WZ0 A;  3JUE A;  4Z0R A;  2VJF A;  2VJE B;  4LLB A;  4A4B A;  2E6R A;  2MNZ A;  1T1H A;  1X4J A;  2K16 A;  4MVT A;  4YBS A;  2E6S A;  5J3X A;  4ZUX U;  4I7C A;  5LKU A;  1CHC A;  4FIP A;  5FER A;  3EB6 A;  2M6M A;  2MA6 A;  3Q1D A;  2C2V S;  3N9L A;  2L75 A;  3DQV R;  3EB5 A;  3SOU A;  2EOD A;  4LKA A;  3ZPV E;  3KV6 A;  2F6J A;  4AUQ B;  2KWK A;  5H1V A;  2KWO A;  4XI1 A;  2YRE A;  1LDJ B;  4QF2 A;  4UP0 A;  3M99 A;  2MKE A;  4A0C D;  1WEV A;  4Q6F A;  2XB1 A;  5D1K B;  2KU3 A;  2P57 A;  1WE9 A;  2L7P A;  5SVX A;  3MHH A;  2ECJ A;  5H1T A;  4V3L C;  3HTK C;  3N9M A;  2AN6 A;  5LKX A;  2MA5 A;  2QIC A;  1Z6U A;  4GNE A;  2ECN A;  4CA1 A;  3FEH A;  5AIT A;  2KWN A;  2OWA A;  3LVR E;  4ZQL A;  3N9N A;  1U6G B;  2KGI A;  2LDR A;  1Z60 A;  3L1X A;  2F6N A;  2YUC A;  1IYM A;  2QJ0 A;  2FD4 A;  5C11 A;  4AP4 A;  4B86 C;  2CSZ A;  2KKX A;  4L7X A;  2K4D A;  2VJE A;  3M62 A;  2FSA A;  3PLW A;  3DPL R;  4YBT A;  3C6W A;  2LGV A;  3PUR A;  3U5O A;  1F62 A;  3LQI A;  2MD8 C;  5K3Q A;  3KV5 A;  5G04 B;  5DKA A;  2EA6 A;  2YSJ A;  5B77 A;  2E61 A;  3RPG C;  2K1J A;  4QF3 A;  3IHP A;  1WIL A;  2YSM A; 
#chains in the Genus database with same CATH homology
 3LJU X;  3PLW A;  2CRW A;  4Z0O A;  2KKY A;  2D8U A;  2JM3 A;  2MKE A;  4QQ4 A;  5SVI A;  3Q1D A;  2LAU A;  3DWD A;  3FEH A;  2FFW A;  3M7K A;  3KDE C;  2XOC A;  2RR4 A;  3JUE A;  3LVQ E;  4H9D A;  4Z0R A;  2JUN A;  2OWA A;  3LVR E;  4F1P A;  2P57 A;  2XP0 A;  3LDY A;  2L7P A;  2EGM A;  3O47 A;  1DCQ A;  2XOZ A;  5SVX A;  5K3Q A;  2CON A;  2B0O E;  2CSV A;  3E2D A;  4OGC A;  2IQJ A;  3FM8 C;  2XOY A;  5SVY A;  5SVI B;  2FD4 A;  2E61 A;  3FJU B;  2M13 A;  3H7H A;  2YRE A;  2YVR A;  2DJA A;  2KKX A;  2EXU A;  3DDT A;  3MDB C;  4OGE A;  2CRR A;  3T9K A;  3SUB A;  4O62 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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