2JWHA

Structure of a glycosylphosphatidylinositol-anchored domain from a trypanosome variant surface glycoprotein
Total Genus 0
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
0
sequence length
48
structure length
48
Chain Sequence
GTKASKSGVPVTQTQTAGADTTAEKCKGKGEKDCKSPDCKWEGGTCKD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein, immune system
molecule keywords Variant surface glycoprotein ILTAT 1.24
publication title Structure of a Glycosylphosphatidylinositol-anchored Domain from a Trypanosome Variant Surface Glycoprotein
pubmed doi rcsb
source organism Trypanosoma brucei brucei
structure length 48
sequence length 48
ec nomenclature
pdb deposition date 2007-10-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1680.40 Alpha Beta 2-Layer Sandwich ligand-binding face of the semaphorins, domain 2 ligand-binding face of the semaphorins, domain 2 2jwhA00
2JWHA
chains in the Genus database with same CATH superfamily
3ZE2B 4WK2B 4Z7OB 3OL2B 1SSLA 4FWWA 3ZDXB 3ZDZB 2VDQB 3AL9A 3ZE0B 3ZE1B 1SHYB 5E6UB 4UM8B 1TYEB 4WK4B 5HDBB 3ZDYB 3AL8A 1U8CB 3NIGB 4K3JB 4O3UB 2VDPB 5E6RB 3NIDB 2P28A 3VI3B 3OKYB 4Z7NB 1OLZA 3T3PB 3AFCA 2JWGA 4UM9B 2VDNB 2VDLB 3VI4B 3OKWA 3FCUB 2JWHA 3OL2A 2VDOB 2UZYB 2VDKB 4GZ8A 3NIFB 4WJKB 1YUKA 5E6SB 3AL8B 2VC2B 4O3TB 2VDMB 2VDRB 4WK0B 4Z7QB 4UM9D 3NVQA 2P26A 3T3MB
chains in the Genus database with same CATH topology
3ZE2B 4WK2B 4Z7OB 3OL2B 1SSLA 4FWWA 3ZDXB 3ZDZB 2VDQB 3AL9A 3ZE0B 3ZE1B 1SHYB 5E6UB 4UM8B 1TYEB 4WK4B 5HDBB 3ZDYB 3AL8A 1U8CB 3NIGB 4K3JB 4O3UB 2VDPB 5E6RB 3NIDB 2P28A 3VI3B 3OKYB 4Z7NB 1OLZA 3T3PB 3AFCA 2JWGA 4UM9B 2VDNB 2VDLB 3VI4B 3OKWA 3FCUB 2JWHA 3OL2A 2VDOB 2UZYB 2VDKB 4GZ8A 3NIFB 4WJKB 1YUKA 5E6SB 3AL8B 2VC2B 4O3TB 2VDMB 2VDRB 4WK0B 4Z7QB 4UM9D 3NVQA 2P26A 3T3MB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JWH A; 
#chains in the Genus database with same CATH topology
 3ZE2 B;  4WK2 B;  4Z7O B;  3OL2 B;  1SSL A;  4FWW A;  3ZDX B;  3ZDZ B;  2VDQ B;  3AL9 A;  3ZE0 B;  3ZE1 B;  1SHY B;  5E6U B;  4UM8 B;  1TYE B;  4WK4 B;  5HDB B;  3ZDY B;  3AL8 A;  1U8C B;  3NIG B;  4K3J B;  4O3U B;  2VDP B;  5E6R B;  3NID B;  2P28 A;  3VI3 B;  3OKY B;  4Z7N B;  1OLZ A;  3T3P B;  3AFC A;  2JWG A;  4UM9 B;  2VDN B;  2VDL B;  3VI4 B;  3OKW A;  3FCU B;  2JWH A;  3OL2 A;  2VDO B;  2UZY B;  2VDK B;  4GZ8 A;  3NIF B;  4WJK B;  1YUK A;  5E6S B;  3AL8 B;  2VC2 B;  4O3T B;  2VDM B;  2VDR B;  4WK0 B;  4Z7Q B;  4UM9 D;  3NVQ A;  2P26 A;  3T3M B; 
#chains in the Genus database with same CATH homology
 3ZE2 B;  4WK2 B;  4Z7O B;  3OL2 B;  1SSL A;  4FWW A;  3ZDX B;  3ZDZ B;  2VDQ B;  3AL9 A;  3ZE0 B;  3ZE1 B;  1SHY B;  5E6U B;  4UM8 B;  1TYE B;  4WK4 B;  5HDB B;  3ZDY B;  3AL8 A;  1U8C B;  3NIG B;  4K3J B;  4O3U B;  2VDP B;  5E6R B;  3NID B;  2P28 A;  3VI3 B;  3OKY B;  4Z7N B;  1OLZ A;  3T3P B;  3AFC A;  2JWG A;  4UM9 B;  2VDN B;  2VDL B;  3VI4 B;  3OKW A;  3FCU B;  2JWH A;  3OL2 A;  2VDO B;  2UZY B;  2VDK B;  4GZ8 A;  3NIF B;  4WJK B;  1YUK A;  5E6S B;  3AL8 B;  2VC2 B;  4O3T B;  2VDM B;  2VDR B;  4WK0 B;  4Z7Q B;  4UM9 D;  3NVQ A;  2P26 A;  3T3M B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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