2JZFA

Nmr conformer closest to the mean coordinates of the domain 513-651 of the sars-cov nonstructural protein nsp3
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
143
structure length
143
Chain Sequence
GSHMVLPSEAPNAKEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords Replicase polyprotein 1ab
publication title Nuclear magnetic resonance structure shows that the severe acute respiratory syndrome coronavirus-unique domain contains a macrodomain fold.
pubmed doi rcsb
source organism Sars coronavirus
total genus 35
structure length 143
sequence length 143
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2008-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11633 SUD-M Single-stranded poly(A) binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.20 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E; domain 1 2jzfA01
2W2GA 2JZEA 2WCTA 2JZDA 2JZFA 2KQVA 2RNKA
chains in the Genus database with same CATH superfamily
2EEEA 1NJRA 2JZFA 1YD9A 1LAPA 3H8GA 3IIFA 3EKEA 4ETKA 4ZYQA 3GPGA 4X2TA 3SIIA 3V45A 3KR4A 3EWQA 4J5SA 4GUAA 1TXZA 3GPOA 2FXKA 4JLLA 3GPQA 1BLLE 2XD7A 5HIHA 5CB5A 3KR5A 2KQVA 3KQXA 4ABLA 4ZY1A 2WCTA 4GVVA 3EWRA 3IIDA 5E3BA 5CB3A 2FAVA 2VRIA 5FSYA 1BPMA 2JZEA 5D8NA 5HOLA 2LGRA 4K0CA 4ZY2A 3EW5A 2DX6A 1LCPA 2L8RA 5FSUA 3PEIA 4ESSA 4IQYA 3SIHA 4JCAA 3JZTA 4KSIA 4ETJA 3EJFA 3GQEA 5FSVA 5AILA 4ZY0A 2BFRA 1HJZA 4R6TA 4J5QA 2ACFA 2BFQA 2J9AA 3H8FA 3EWOA 3Q6ZA 1TY8A 5CMSA 2AFCA 4GVWA 3KZWA 4K3NA 3H8EA 2FG1A 3KQZA 5DUSA 3SIJA 3T8WA 4KYBA 4ABKA 3SIGA 4JGKA 4J4ZA 2JZDA 4TU0A 3IJ3A 4ZX9A 1LANA 4J5RA 3V2BA 3GQOA 5CBMA 1LAMA 4JVVA 3JRUA 1VHUA 5FSZA 3VFQA 4ZX8A 4D86A 3ETIA 1ZR3A 1BPNA 4ZI6A 4R7MA 1SPVA 5FSXA 4R76A 1GYTA 2X47A 2W2GA 3Q71A 3EJGA 3EWPA 2RNKA 1ZR5A 4UMLA 2EWBA
chains in the Genus database with same CATH topology
2W2GA 2JZEA 2WCTA 2JZDA 2JZFA 2KQVA 2RNKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W2G A;  2JZE A;  2WCT A;  2JZD A;  2JZF A;  2KQV A;  2RNK A; 
#chains in the Genus database with same CATH topology
 2EEE A;  1NJR A;  2JZF A;  1YD9 A;  1LAP A;  3H8G A;  3IIF A;  3EKE A;  4ETK A;  4ZYQ A;  3GPG A;  4X2T A;  3SII A;  3V45 A;  3KR4 A;  3EWQ A;  4J5S A;  4GUA A;  1TXZ A;  3GPO A;  2FXK A;  4JLL A;  3GPQ A;  1BLL E;  2XD7 A;  5HIH A;  5CB5 A;  3KR5 A;  2KQV A;  3KQX A;  4ABL A;  4ZY1 A;  2WCT A;  4GVV A;  3EWR A;  3IID A;  5E3B A;  5CB3 A;  2FAV A;  2VRI A;  5FSY A;  1BPM A;  2JZE A;  5D8N A;  5HOL A;  2LGR A;  4K0C A;  4ZY2 A;  3EW5 A;  2DX6 A;  1LCP A;  2L8R A;  5FSU A;  3PEI A;  4ESS A;  4IQY A;  3SIH A;  4JCA A;  3JZT A;  4KSI A;  4ETJ A;  3EJF A;  3GQE A;  5FSV A;  5AIL A;  4ZY0 A;  2BFR A;  1HJZ A;  4R6T A;  4J5Q A;  2ACF A;  2BFQ A;  2J9A A;  3H8F A;  3EWO A;  3Q6Z A;  1TY8 A;  5CMS A;  2AFC A;  4GVW A;  3KZW A;  4K3N A;  3H8E A;  2FG1 A;  3KQZ A;  5DUS A;  3SIJ A;  3T8W A;  4KYB A;  4ABK A;  3SIG A;  4JGK A;  4J4Z A;  2JZD A;  4TU0 A;  3IJ3 A;  4ZX9 A;  1LAN A;  4J5R A;  3V2B A;  3GQO A;  5CBM A;  1LAM A;  4JVV A;  3JRU A;  1VHU A;  5FSZ A;  3VFQ A;  4ZX8 A;  4D86 A;  3ETI A;  1ZR3 A;  1BPN A;  4ZI6 A;  4R7M A;  1SPV A;  5FSX A;  4R76 A;  1GYT A;  2X47 A;  2W2G A;  3Q71 A;  3EJG A;  3EWP A;  2RNK A;  1ZR5 A;  4UML A;  2EWB A; 
#chains in the Genus database with same CATH homology
 2W2G A;  2JZE A;  2WCT A;  2JZD A;  2JZF A;  2KQV A;  2RNK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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