2K0DX

Nmr structure of a mutant colicin e7 immunity protein im7 with an extended helix iii
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
93
structure length
93
Chain Sequence
ELKNSISDYTEAEFVQLLKEIEKENVAATDDVLDVLLEHFVKITEHPDGTALIYEAAARAAANPGGDGGGPEGIVKEIKEWRAANGKPGFKQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin inhibitor
molecule keywords Colicin-E7 immunity protein
publication title Amino acid insertion reveals a necessary three-helical intermediate in the folding pathway of the colicin E7 immunity protein Im7.
pubmed doi rcsb
source organism Escherichia coli
total genus 31
structure length 93
sequence length 93
ec nomenclature
pdb deposition date 2008-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2k0dX00
1ZNVA 1CEIA 2GYKA 1E0HA 4F37A 2GZFA 3GKLC 1MZ8A 1GXGA 2ERHA 2VLOA 1IMPA 1AYIA 2JB0A 1FR2A 1BXIA 1UJZA 2JAZA 2VLPA 2K0DX 3GJNA 2GZIA 2GZGA 2K5XA 2VLNA 2JBGA 3U43A 7CEIA 2GZJA 1IMQA 2WPTA 1UNKA 5EW5E 1EMVA 1GXHA 4QKOA 2NO8A 2VLQA 2GZEA 4UHPB
chains in the Genus database with same CATH superfamily
2PENA 2JYLA 3DS3A 1OR5A 2L6EA 1MZ8A 4XFYA 2PEQA 1KQSO 1RO2A 3G6EP 2BUOA 2PEMA 4IPYA 2FVEA 2OTJP 2JU1A 1VQPP 2MVUA 3M1MA 3CCSP 5EJDA 1ZNVA 2EIAA 5I4TG 1E0HA 1YJ9P 2M8LA 3EJDA 4XRQA 2FVAA 2JBGA 4U0AA 1GPJA 2KODA 1YITP 2GZEA 4IZ6A 2FQ0A 2X2BA 4NEOA 2ONTA 1F80D 2JB0A 1FR2A 2PEKA 1DNYA 1BAJA 2DNWA 2EHTA 4U0DA 3I55P 1T8KA 3CD6P 5KP7B 1UNKA 2M5RA 2CWOA 4PXHB 2M8PA 3EJEA 2K0YA 2L22A 3Q20A 2K0DX 4BPFA 2LOLA 2GZGA 1W2BO 1KLPA 4R0MA 1Q86Q 1VQ4P 2PY8A 1Q7YQ 4H2WC 1EMVA 3DPHA 2JO0A 1GXHA 2QNWA 1A43A 3CMAP 1NJIQ 3G4SP 3G26A 3G29A 3HYBA 2K94A 5HGMA 2EG5A 2KG8A 2XV6A 5BS1A 3G1GA 3OW2O 1DV5A 2CNRA 2PEIA 2XXMA 5KP6B 1QVGO 2KOPA 4GR6A 2K93A 3G0VA 2MR7A 1E6JP 2K0XA 3E2DA 2M8NA 1VQ7P 2EHSA 2GDYA 1NQ4A 4H2XC 4U0BA 1AF8A 3MGEA 1AYIA 1UJZA 4XFXA 5F2KA 1YI2P 1L0HA 3B5IA 2MD9A 2BHVA 2JQ4A 2K92A 2FVFA 3G21A 2N50A 2CQ8A 2L0QA 5DCKA 1JJ2O 1M6EX 1ACPA 2FQ2A 1VQ6P 3VRLC 3P05A 5HVCA 1IMQA 4DG9A 3NTEA 4U0FA 4WYMA 3CCMP 2KGDA 2N6YA 2L9FA 1ZMBA 1CEIA 2PEJA 3GZMA 4F37A 2KOOA 4BPHA 4MRTC 3CCQP 3CPWO 2QA4P 3I56P 3CC7P 2EFJA 2XT1A 5HGNA 2LL8A 5KP8B 4U0CA 3CMEP 2KG6A 7CEIA 2MF4A 3CE7A 2AVAA 1A8OA 1QVFO 1AUMA 2JYGA 2KGCA 4PH0A 2CG5B 2KGAA 3H47A 2GDWA 1K9MQ 5JPAA 4U0EA 4HKGA 2KOQA 4CA3A 2JAZA 1HQBA 2VLPA 3LMOA 4GR2A 3GJNA 2KGEA 1K30A 2DGYA 3G71P 2QEXP 3G28A 3LRYA 2FAEA 3CCVP 2KG9A 1X3OA 3B4QA 1K73Q 1M90Q 5HV8A 2P9XA 1IUQA 2PNGA 2XZ0D 1VQNP 2LF4A 2ERHA 1IMPA 2KOSA 1Z6MA 2ROQA 2Z46A 3U43A 3NY7B 1VQMP 2N6ZA 3DS0A 3CC2P 2N5IA 4QKOA 2CGQA 2LPKA 2LMLA 2KW2A 4QNBA 5HGLA 3H0DA 2Z45A 2E1MA 4PH1A 3RG2A 1HY8A 1M74A 2FADA 2LIUA 2K5XA 2KR5A 2OARA 2FQ1A 1N8RQ 2L4BA 2GYKA 2GDXA 4COCA 3DS1A 1GXGA 2XZ1C 1BXIA 4H2YC 5BS2A 1VKUA 5HGOA 4M0IA 2LIWA 2VLNA 1KC8Q 2AF8A 4XFZA 2WPTA 1VQ8P 3CCJP 2NO8A 1RO0A 1EIAA 2FHSC 1M1KQ 2Z44A 1VQKP 2FACA 2AFEA 4BPGA 3DS5A 3GKLC 4XROA 2MVVA 5F2NA 2MR8A 1L0IA 1YIJP 2N5HA 1VQOP 2AFDA 3CCRP 1Q82Q 1Q81Q 2LTEA 3H4EA 2OTLP 2KWLA 1VHNA 1RNIA 3HZQA 5CZDB 2N98A 1M6NA 2MY5A 3RG6C 3GZLA 3CCUP 3DS4A 2VSQA 3CCEP 4UHPB 2GZFA 3G1IA 3CC4P 3DS2A 1VQ5P 1D1DA 2GZIA 1K8AQ 2JGPA 3CXCO 5F2OA 5EW5E 3CCLP 2LKIA 2VLQA 1S72P 1VQ9P 3EJBA 3WBHA 4PWVB 2JU2A 4COPA 2K2QA 2VLOA 2PEOA 1KD1Q 2GZJA 3DTJA 1YHQP 1QRJA 2KORA 1YJWP 1VQLP 1EOQA 1YJNP
chains in the Genus database with same CATH topology
1ZNVA 1CEIA 2GYKA 1E0HA 4F37A 2GZFA 3GKLC 1MZ8A 1GXGA 2ERHA 2VLOA 1IMPA 1AYIA 2JB0A 1FR2A 1BXIA 1UJZA 2JAZA 2VLPA 2K0DX 3GJNA 2GZIA 2GZGA 2K5XA 2VLNA 2JBGA 3U43A 7CEIA 2GZJA 1IMQA 2WPTA 1UNKA 5EW5E 1EMVA 1GXHA 4QKOA 2NO8A 2VLQA 2GZEA 4UHPB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZNV A;  1CEI A;  2GYK A;  1E0H A;  4F37 A;  2GZF A;  3GKL C;  1MZ8 A;  1GXG A;  2ERH A;  2VLO A;  1IMP A;  1AYI A;  2JB0 A;  1FR2 A;  1BXI A;  1UJZ A;  2JAZ A;  2VLP A;  2K0D X;  3GJN A;  2GZI A;  2GZG A;  2K5X A;  2VLN A;  2JBG A;  3U43 A;  7CEI A;  2GZJ A;  1IMQ A;  2WPT A;  1UNK A;  5EW5 E;  1EMV A;  1GXH A;  4QKO A;  2NO8 A;  2VLQ A;  2GZE A;  4UHP B; 
#chains in the Genus database with same CATH topology
 2PEN A;  2JYL A;  3DS3 A;  1OR5 A;  2L6E A;  1MZ8 A;  4XFY A;  2PEQ A;  1KQS O;  1RO2 A;  3G6E P;  2BUO A;  2PEM A;  4IPY A;  2FVE A;  2OTJ P;  2JU1 A;  1VQP P;  2MVU A;  3M1M A;  3CCS P;  5EJD A;  1ZNV A;  2EIA A;  5I4T G;  1E0H A;  1YJ9 P;  2M8L A;  3EJD A;  4XRQ A;  2FVA A;  2JBG A;  4U0A A;  1GPJ A;  2KOD A;  1YIT P;  2GZE A;  4IZ6 A;  2FQ0 A;  2X2B A;  4NEO A;  2ONT A;  1F80 D;  2JB0 A;  1FR2 A;  2PEK A;  1DNY A;  1BAJ A;  2DNW A;  2EHT A;  4U0D A;  3I55 P;  1T8K A;  3CD6 P;  5KP7 B;  1UNK A;  2M5R A;  2CWO A;  4PXH B;  2M8P A;  3EJE A;  2K0Y A;  2L22 A;  3Q20 A;  2K0D X;  4BPF A;  2LOL A;  2GZG A;  1W2B O;  1KLP A;  4R0M A;  1Q86 Q;  1VQ4 P;  2PY8 A;  1Q7Y Q;  4H2W C;  1EMV A;  3DPH A;  2JO0 A;  1GXH A;  2QNW A;  1A43 A;  3CMA P;  1NJI Q;  3G4S P;  3G26 A;  3G29 A;  3HYB A;  2K94 A;  5HGM A;  2EG5 A;  2KG8 A;  2XV6 A;  5BS1 A;  3G1G A;  3OW2 O;  1DV5 A;  2CNR A;  2PEI A;  2XXM A;  5KP6 B;  1QVG O;  2KOP A;  4GR6 A;  2K93 A;  3G0V A;  2MR7 A;  1E6J P;  2K0X A;  3E2D A;  2M8N A;  1VQ7 P;  2EHS A;  2GDY A;  1NQ4 A;  4H2X C;  4U0B A;  1AF8 A;  3MGE A;  1AYI A;  1UJZ A;  4XFX A;  5F2K A;  1YI2 P;  1L0H A;  3B5I A;  2MD9 A;  2BHV A;  2JQ4 A;  2K92 A;  2FVF A;  3G21 A;  2N50 A;  2CQ8 A;  2L0Q A;  5DCK A;  1JJ2 O;  1M6E X;  1ACP A;  2FQ2 A;  1VQ6 P;  3VRL C;  3P05 A;  5HVC A;  1IMQ A;  4DG9 A;  3NTE A;  4U0F A;  4WYM A;  3CCM P;  2KGD A;  2N6Y A;  2L9F A;  1ZMB A;  1CEI A;  2PEJ A;  3GZM A;  4F37 A;  2KOO A;  4BPH A;  4MRT C;  3CCQ P;  3CPW O;  2QA4 P;  3I56 P;  3CC7 P;  2EFJ A;  2XT1 A;  5HGN A;  2LL8 A;  5KP8 B;  4U0C A;  3CME P;  2KG6 A;  7CEI A;  2MF4 A;  3CE7 A;  2AVA A;  1A8O A;  1QVF O;  1AUM A;  2JYG A;  2KGC A;  4PH0 A;  2CG5 B;  2KGA A;  3H47 A;  2GDW A;  1K9M Q;  5JPA A;  4U0E A;  4HKG A;  2KOQ A;  4CA3 A;  2JAZ A;  1HQB A;  2VLP A;  3LMO A;  4GR2 A;  3GJN A;  2KGE A;  1K30 A;  2DGY A;  3G71 P;  2QEX P;  3G28 A;  3LRY A;  2FAE A;  3CCV P;  2KG9 A;  1X3O A;  3B4Q A;  1K73 Q;  1M90 Q;  5HV8 A;  2P9X A;  1IUQ A;  2PNG A;  2XZ0 D;  1VQN P;  2LF4 A;  2ERH A;  1IMP A;  2KOS A;  1Z6M A;  2ROQ A;  2Z46 A;  3U43 A;  3NY7 B;  1VQM P;  2N6Z A;  3DS0 A;  3CC2 P;  2N5I A;  4QKO A;  2CGQ A;  2LPK A;  2LML A;  2KW2 A;  4QNB A;  5HGL A;  3H0D A;  2Z45 A;  2E1M A;  4PH1 A;  3RG2 A;  1HY8 A;  1M74 A;  2FAD A;  2LIU A;  2K5X A;  2KR5 A;  2OAR A;  2FQ1 A;  1N8R Q;  2L4B A;  2GYK A;  2GDX A;  4COC A;  3DS1 A;  1GXG A;  2XZ1 C;  1BXI A;  4H2Y C;  5BS2 A;  1VKU A;  5HGO A;  4M0I A;  2LIW A;  2VLN A;  1KC8 Q;  2AF8 A;  4XFZ A;  2WPT A;  1VQ8 P;  3CCJ P;  2NO8 A;  1RO0 A;  1EIA A;  2FHS C;  1M1K Q;  2Z44 A;  1VQK P;  2FAC A;  2AFE A;  4BPG A;  3DS5 A;  3GKL C;  4XRO A;  2MVV A;  5F2N A;  2MR8 A;  1L0I A;  1YIJ P;  2N5H A;  1VQO P;  2AFD A;  3CCR P;  1Q82 Q;  1Q81 Q;  2LTE A;  3H4E A;  2OTL P;  2KWL A;  1VHN A;  1RNI A;  3HZQ A;  5CZD B;  2N98 A;  1M6N A;  2MY5 A;  3RG6 C;  3GZL A;  3CCU P;  3DS4 A;  2VSQ A;  3CCE P;  4UHP B;  2GZF A;  3G1I A;  3CC4 P;  3DS2 A;  1VQ5 P;  1D1D A;  2GZI A;  1K8A Q;  2JGP A;  3CXC O;  5F2O A;  5EW5 E;  3CCL P;  2LKI A;  2VLQ A;  1S72 P;  1VQ9 P;  3EJB A;  3WBH A;  4PWV B;  2JU2 A;  4COP A;  2K2Q A;  2VLO A;  2PEO A;  1KD1 Q;  2GZJ A;  3DTJ A;  1YHQ P;  1QRJ A;  2KOR A;  1YJW P;  1VQL P;  1EOQ A;  1YJN P; 
#chains in the Genus database with same CATH homology
 1ZNV A;  1CEI A;  2GYK A;  1E0H A;  4F37 A;  2GZF A;  3GKL C;  1MZ8 A;  1GXG A;  2ERH A;  2VLO A;  1IMP A;  1AYI A;  2JB0 A;  1FR2 A;  1BXI A;  1UJZ A;  2JAZ A;  2VLP A;  2K0D X;  3GJN A;  2GZI A;  2GZG A;  2K5X A;  2VLN A;  2JBG A;  3U43 A;  7CEI A;  2GZJ A;  1IMQ A;  2WPT A;  1UNK A;  5EW5 E;  1EMV A;  1GXH A;  4QKO A;  2NO8 A;  2VLQ A;  2GZE A;  4UHP B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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