2K3OA

Solution structure of the type 2 repetitive domain (tusp1-rp2) of the egg case silk from nephila antipodiana
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
129
structure length
129
Chain Sequence
SYSSAFAQAASSSLATSSAISRAFASVSSASAASSLAYNIGLSAARSLGIASDTALAGALAQAVGGVGAGASASAYANAIARAAGQFLATQGVLNAVNASSLGSALANALSDSAANSAVSGNYLGVSQN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords TuSp1
publication title Solution structure of eggcase silk protein and its implications for silk fiber formation
pubmed doi rcsb
source organism Nephila antipodiana
total genus 44
structure length 129
sequence length 129
ec nomenclature
pdb deposition date 2008-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2k3oA00
2K3OA 2K3NA 2LYIA 2MQAA
chains in the Genus database with same CATH superfamily
2HROA 1Y1VA 1I3QA 3LR6A 1WCMA 2N1DB 2EZAA 3EZEA 2LPJA 1W27A 2R7ZA 1SMYD 2VK9A 3LRDA 3GTMA 2EZBA 3NZ4A 3GTGA 2X0OA 2MQAA 4BABA 3FKIA 1YNND 1IW7D 2A69D 3GTOA 1ZYMA 4C5UA 3GTLA 2YU9A 5IZ2A 2MX9A 2FIOA 3GTJA 1T6JA 2LTHA 3CQZA 2O5JD 2MX8A 3LR2A 1Y1WA 2K3NA 4CQ5A 4CEIA 3LR8A 2NVYA 4C6GA 4C5SA 4CEHA 2E2HA 1TWAA 3GTKA 2B63A 1ZYRD 4V2RA 2A6HD 2JA5A 4V2QA 1TWGA 1I50A 2AQLA 1I6VD 2YIIA 1SFOA 3EZAA 2K3OA 2K3QA 2F5JA 2Y0NA 1T6PA 2LPIA 3U4QA 2CW0D 1EZAA 1TWCA 4BAAA 2X0QA 4C2MA 2JA7A 3GTQA 1Y2MA 2HWGA 2R93A 2X0PA 2A6ED 1EZBA 2NVXA 2JA6A 4FBSA 1TWHA 2N3EA 2LYIA 4CEJA 2VUMA 2BE5D 2EZCA 3GTPA 3H0GA 2FIPA 3U44A 2E2IA 1R9TA 1HQMD 2LKMB 2MP0A 1YNJD 1TWFA 2A68D 4QIWA 1K83A 2R92A 4C5RA 3EZBA
chains in the Genus database with same CATH topology
1Y1VA 1I3QA 3LR6A 1WCMA 2N1DB 2LPJA 2R7ZA 1SMYD 2VK9A 3LRDA 3GTMA 3GTGA 2X0OA 2MQAA 3FKIA 1YNND 1IW7D 3GTOA 3GTLA 2YU9A 5IZ2A 2MX9A 2FIOA 3GTJA 2LTHA 3CQZA 2O5JD 2MX8A 3LR2A 1Y1WA 2K3NA 4CEIA 3LR8A 2NVYA 4CEHA 2E2HA 1TWAA 3GTKA 2B63A 1ZYRD 2A6HD 2JA5A 1TWGA 1I50A 2AQLA 1I6VD 1SFOA 2K3OA 2K3QA 2F5JA 2Y0NA 2LPIA 3U4QA 2CW0D 1TWCA 2X0QA 4C2MA 2JA7A 3GTQA 2R93A 2X0PA 2A6ED 2NVXA 2JA6A 4FBSA 1TWHA 2N3EA 2LYIA 4CEJA 2VUMA 2BE5D 3GTPA 3H0GA 2FIPA 3U44A 2E2IA 1R9TA 1HQMD 2LKMB 1YNJD 1TWFA 2A68D 4QIWA 1K83A 2R92A 2A69D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K3O A;  2K3N A;  2LYI A;  2MQA A; 
#chains in the Genus database with same CATH topology
 2HRO A;  1Y1V A;  1I3Q A;  3LR6 A;  1WCM A;  2N1D B;  2EZA A;  3EZE A;  2LPJ A;  1W27 A;  2R7Z A;  1SMY D;  2VK9 A;  3LRD A;  3GTM A;  2EZB A;  3NZ4 A;  3GTG A;  2X0O A;  2MQA A;  4BAB A;  3FKI A;  1YNN D;  1IW7 D;  2A69 D;  3GTO A;  1ZYM A;  4C5U A;  3GTL A;  2YU9 A;  5IZ2 A;  2MX9 A;  2FIO A;  3GTJ A;  1T6J A;  2LTH A;  3CQZ A;  2O5J D;  2MX8 A;  3LR2 A;  1Y1W A;  2K3N A;  4CQ5 A;  4CEI A;  3LR8 A;  2NVY A;  4C6G A;  4C5S A;  4CEH A;  2E2H A;  1TWA A;  3GTK A;  2B63 A;  1ZYR D;  4V2R A;  2A6H D;  2JA5 A;  4V2Q A;  1TWG A;  1I50 A;  2AQL A;  1I6V D;  2YII A;  1SFO A;  3EZA A;  2K3O A;  2K3Q A;  2F5J A;  2Y0N A;  1T6P A;  2LPI A;  3U4Q A;  2CW0 D;  1EZA A;  1TWC A;  4BAA A;  2X0Q A;  4C2M A;  2JA7 A;  3GTQ A;  1Y2M A;  2HWG A;  2R93 A;  2X0P A;  2A6E D;  1EZB A;  2NVX A;  2JA6 A;  4FBS A;  1TWH A;  2N3E A;  2LYI A;  4CEJ A;  2VUM A;  2BE5 D;  2EZC A;  3GTP A;  3H0G A;  2FIP A;  3U44 A;  2E2I A;  1R9T A;  1HQM D;  2LKM B;  2MP0 A;  1YNJ D;  1TWF A;  2A68 D;  4QIW A;  1K83 A;  2R92 A;  4C5R A;  3EZB A; 
#chains in the Genus database with same CATH homology
 1Y1V A;  1I3Q A;  3LR6 A;  1WCM A;  2N1D B;  2LPJ A;  2R7Z A;  1SMY D;  2VK9 A;  3LRD A;  3GTM A;  3GTG A;  2X0O A;  2MQA A;  3FKI A;  1YNN D;  1IW7 D;  3GTO A;  3GTL A;  2YU9 A;  5IZ2 A;  2MX9 A;  2FIO A;  3GTJ A;  2LTH A;  3CQZ A;  2O5J D;  2MX8 A;  3LR2 A;  1Y1W A;  2K3N A;  4CEI A;  3LR8 A;  2NVY A;  4CEH A;  2E2H A;  1TWA A;  3GTK A;  2B63 A;  1ZYR D;  2A6H D;  2JA5 A;  1TWG A;  1I50 A;  2AQL A;  1I6V D;  1SFO A;  2K3O A;  2K3Q A;  2F5J A;  2Y0N A;  2LPI A;  3U4Q A;  2CW0 D;  1TWC A;  2X0Q A;  4C2M A;  2JA7 A;  3GTQ A;  2R93 A;  2X0P A;  2A6E D;  2NVX A;  2JA6 A;  4FBS A;  1TWH A;  2N3E A;  2LYI A;  4CEJ A;  2VUM A;  2BE5 D;  3GTP A;  3H0G A;  2FIP A;  3U44 A;  2E2I A;  1R9T A;  1HQM D;  2LKM B;  1YNJ D;  1TWF A;  2A68 D;  4QIW A;  1K83 A;  2R92 A;  2A69 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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